#=GENOME_DIFF	1.0
#=CREATED	12:23:11 18 Feb 2023
#=PROGRAM	breseq 0.35.4 revision f352f80f4bc9
#=COMMAND	/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 2 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/AC_000091.gb /var/alemutpipe-outputs/good/SRR10353325_R1.good.fq /var/alemutpipe-outputs/good/SRR10353325_R2.good.fq
#=REFSEQ	/var/data/AC_000091.gb
#=READSEQ	/var/alemutpipe-outputs/good/SRR10353325_R1.good.fq
#=READSEQ	/var/alemutpipe-outputs/good/SRR10353325_R2.good.fq
#=CONVERTED-BASES	627961488
#=CONVERTED-READS	6977744
#=INPUT-BASES	627961488
#=INPUT-READS	6977744
#=MAPPED-BASES	623851654
#=MAPPED-READS	6933879
SNP	1	119	AC_000091	11496	T
SNP	2	120	AC_000091	28419	T
SNP	3	121	AC_000091	30387	T
SNP	4	122	AC_000091	49463	T
INS	5	123	AC_000091	51338	G
SNP	6	124	AC_000091	55008	T
SNP	7	125	AC_000091	104666	G
SNP	8	127	AC_000091	124632	G
INS	9	128	AC_000091	149558	T	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=T
INS	10	129	AC_000091	167651	G	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=G
SNP	11	130	AC_000091	169953	A
INS	12	133	AC_000091	251759	G	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=G
SNP	13	134	AC_000091	366525	G
SNP	14	135	AC_000091	393476	A
SNP	15	136	AC_000091	395812	T
SNP	16	137	AC_000091	457230	G
INS	17	138	AC_000091	483561	C	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=C
SNP	18	139	AC_000091	486032	G
SNP	19	140	AC_000091	506176	G
INS	20	141	AC_000091	526302	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
SNP	21	142	AC_000091	547694	G
INS	22	143	AC_000091	547835	G
SNP	23	144	AC_000091	556858	T
SNP	24	145	AC_000091	565784	C
DEL	25	258,267	AC_000091	654214	1199
DEL	26	146	AC_000091	706394	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	27	147	AC_000091	721062	T
SNP	28	148	AC_000091	737655	G
SNP	29	149	AC_000091	768787	G
SNP	30	151	AC_000091	778483	T
SNP	31	152	AC_000091	805405	G
SNP	32	153	AC_000091	840393	G
SNP	33	154	AC_000091	885798	G
INS	34	155	AC_000091	901267	C	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=C
SNP	35	156	AC_000091	962866	G
SNP	36	157	AC_000091	963361	G
SNP	37	158	AC_000091	1045186	G
SNP	38	159	AC_000091	1065700	T
SNP	39	160	AC_000091	1067795	G
INS	40	161	AC_000091	1072535	G	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=G
SNP	41	162	AC_000091	1091749	T
SNP	42	163	AC_000091	1093686	C
SUB	43	164,165	AC_000091	1132556	2	CA
SUB	44	166,167	AC_000091	1132560	1	TT
INS	45	168	AC_000091	1139752	G	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=G
SNP	46	169	AC_000091	1153927	G
SNP	47	171	AC_000091	1194589	G
SNP	48	172	AC_000091	1256829	G
SNP	49	173	AC_000091	1292378	C
SNP	50	174	AC_000091	1303712	G
SNP	51	175	AC_000091	1341506	G
SNP	52	176	AC_000091	1369160	G
SNP	53	177	AC_000091	1411407	A
DEL	54	261,273	AC_000091	1413639	23060
DEL	55	178	AC_000091	1464573	1
SNP	56	179	AC_000091	1609104	G
DEL	57	180	AC_000091	1620262	1
SNP	58	181	AC_000091	1644094	C
INS	59	182	AC_000091	1676369	C	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=C
SNP	60	183	AC_000091	1873445	T
SNP	61	184	AC_000091	1955601	C
SNP	62	187	AC_000091	2153956	C
SNP	63	189	AC_000091	2248614	A
SNP	64	191	AC_000091	2265849	C
DEL	65	262,275	AC_000091	2320795	1336
SNP	66	194	AC_000091	2356229	A
SNP	67	195	AC_000091	2364097	C
SNP	68	196	AC_000091	2528475	A
SNP	69	197	AC_000091	2532671	A
SNP	70	198	AC_000091	2569516	C
SNP	71	199	AC_000091	2587316	C
SNP	72	200	AC_000091	2634430	C
SNP	73	201	AC_000091	2651283	A
INS	74	202	AC_000091	2684480	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	75	203	AC_000091	2705226	A
SNP	76	205	AC_000091	2804247	C
SNP	77	207	AC_000091	2857875	A
SNP	78	208	AC_000091	2868301	T
SNP	79	209	AC_000091	2886049	A
SNP	80	210	AC_000091	2891667	C
SNP	81	211	AC_000091	2906975	G
SNP	82	212	AC_000091	2919665	A
SNP	83	213	AC_000091	2937297	A
SNP	84	214	AC_000091	2949857	A
SNP	85	216	AC_000091	3100536	G
SNP	86	217	AC_000091	3123098	G
SNP	87	218	AC_000091	3127881	A
SNP	88	219	AC_000091	3153326	A
SNP	89	220	AC_000091	3169789	A
SNP	90	221	AC_000091	3215778	C
SNP	91	222	AC_000091	3222265	C
SNP	92	223	AC_000091	3247179	C
DEL	93	263,276	AC_000091	3261134	1199
SNP	94	225	AC_000091	3266304	C
SNP	95	227	AC_000091	3402600	A
SNP	96	228	AC_000091	3405975	T
SNP	97	230	AC_000091	3557661	G
SNP	98	231	AC_000091	3624613	C
SNP	99	232	AC_000091	3636914	C
SNP	100	233	AC_000091	3656842	A
SNP	101	235	AC_000091	3711417	A
SNP	102	236	AC_000091	3725678	A
DEL	103	265,277	AC_000091	3742936	1336
INS	104	237,238	AC_000091	3912304	GG	repeat_length=1	repeat_new_copies=10	repeat_ref_copies=8	repeat_seq=G
SNP	105	240	AC_000091	4017654	T
SNP	106	241	AC_000091	4051195	T
SNP	107	243	AC_000091	4144590	G
SNP	108	245	AC_000091	4245382	T
SNP	109	246	AC_000091	4278307	T
SNP	110	247	AC_000091	4343161	G
SNP	111	248	AC_000091	4344956	A
SNP	112	249	AC_000091	4357741	G
DEL	113	250,251	AC_000091	4371274	2	repeat_length=1	repeat_new_copies=3	repeat_ref_copies=5	repeat_seq=A
SNP	114	252	AC_000091	4381155	T
SNP	115	254	AC_000091	4444533	T
SNP	116	255	AC_000091	4558099	C
INS	117	256	AC_000091	4585134	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	118	257	AC_000091	4642006	A
RA	119	.	AC_000091	11496	0	C	T	consensus_score=562.2	frequency=1	major_base=T	major_cov=60/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/73
RA	120	.	AC_000091	28419	0	C	T	bias_e_value=4159050	bias_p_value=0.895125	consensus_score=442.4	fisher_strand_p_value=0.578504	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=98/41	major_frequency=9.720e-01	minor_base=G	minor_cov=4/0	new_cov=98/41	polymorphism_frequency=9.720e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=102/41
RA	121	.	AC_000091	30387	0	C	T	consensus_score=526.4	frequency=1	major_base=T	major_cov=81/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=81/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/53
RA	122	.	AC_000091	49463	0	C	T	consensus_score=488.9	frequency=1	major_base=T	major_cov=49/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/71
RA	123	.	AC_000091	51334	1	.	G	bias_e_value=3632680	bias_p_value=0.781837	consensus_score=379.7	fisher_strand_p_value=0.619296	frequency=1	ks_quality_p_value=0.67353	major_base=G	major_cov=50/47	major_frequency=9.604e-01	minor_base=.	minor_cov=3/1	new_cov=50/47	polymorphism_frequency=9.604e-01	polymorphism_score=10.0	prediction=consensus	ref_cov=3/1	total_cov=53/48
RA	124	.	AC_000091	55008	0	C	T	consensus_score=482.9	frequency=1	major_base=T	major_cov=54/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/68
RA	125	.	AC_000091	104666	0	A	G	consensus_score=528.2	frequency=1	major_base=G	major_cov=62/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/73
RA	126	.	AC_000091	119384	0	T	G	bias_e_value=1.26721e-13	bias_p_value=2.72733e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.5	fisher_strand_p_value=5.45908e-22	frequency=2.783e-01	ks_quality_p_value=1	major_base=T	major_cov=7/76	major_frequency=7.217e-01	minor_base=G	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.783e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=7/76	total_cov=39/76
RA	127	.	AC_000091	124632	0	A	G	consensus_score=557.5	frequency=1	major_base=G	major_cov=75/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/69
RA	128	.	AC_000091	149550	1	.	T	bias_e_value=4646330	bias_p_value=1	consensus_score=598.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999717	major_base=T	major_cov=65/79	major_frequency=9.796e-01	minor_base=.	minor_cov=1/2	new_cov=65/79	polymorphism_frequency=9.796e-01	polymorphism_score=3.7	prediction=consensus	ref_cov=1/2	total_cov=67/81
RA	129	.	AC_000091	167646	1	.	G	bias_e_value=4636330	bias_p_value=0.997848	consensus_score=540.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.93512	major_base=G	major_cov=80/58	major_frequency=9.857e-01	minor_base=.	minor_cov=1/1	new_cov=80/58	polymorphism_frequency=9.857e-01	polymorphism_score=1.2	prediction=consensus	ref_cov=1/1	total_cov=81/59
RA	130	.	AC_000091	169953	0	G	A	consensus_score=500.7	frequency=1	major_base=A	major_cov=60/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/67
RA	131	.	AC_000091	175694	0	T	G	bias_e_value=1.98753e-07	bias_p_value=4.27764e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=296.7	fisher_strand_p_value=1.21015e-15	frequency=2.456e-01	ks_quality_p_value=1	major_base=T	major_cov=16/70	major_frequency=7.544e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.456e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=16/70	total_cov=44/70
RA	132	.	AC_000091	193480	0	C	G	bias_e_value=1.86446	bias_p_value=4.01275e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.2	fisher_strand_p_value=2.15106e-08	frequency=2.143e-01	ks_quality_p_value=1	major_base=C	major_cov=8/47	major_frequency=7.857e-01	minor_base=G	minor_cov=14/1	new_cov=14/1	polymorphism_frequency=2.143e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=8/47	total_cov=22/48
RA	133	.	AC_000091	251754	1	.	G	bias_e_value=4646330	bias_p_value=1	consensus_score=441.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999681	major_base=G	major_cov=62/49	major_frequency=9.823e-01	minor_base=.	minor_cov=1/1	new_cov=62/49	polymorphism_frequency=9.823e-01	polymorphism_score=1.0	prediction=consensus	ref_cov=1/1	total_cov=63/50
RA	134	.	AC_000091	366525	0	A	G	consensus_score=442.2	frequency=1	major_base=G	major_cov=52/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/61
RA	135	.	AC_000091	393476	0	G	A	bias_e_value=3640790	bias_p_value=0.783584	consensus_score=526.9	fisher_strand_p_value=0.419118	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=79/56	major_frequency=9.926e-01	minor_base=G	minor_cov=0/1	new_cov=79/56	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=79/57
RA	136	.	AC_000091	395812	0	C	T	consensus_score=546.9	frequency=1	major_base=T	major_cov=45/91	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/91	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/91
RA	137	.	AC_000091	457230	0	A	G	consensus_score=532.9	frequency=1	major_base=G	major_cov=70/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/67
RA	138	.	AC_000091	483555	1	.	C	bias_e_value=4643660	bias_p_value=0.999425	consensus_score=402.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.966285	major_base=C	major_cov=40/67	major_frequency=9.817e-01	minor_base=.	minor_cov=1/1	new_cov=40/67	polymorphism_frequency=9.817e-01	polymorphism_score=1.1	prediction=consensus	ref_cov=1/1	total_cov=41/68
RA	139	.	AC_000091	486032	0	A	G	consensus_score=524.2	frequency=1	major_base=G	major_cov=78/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/55
RA	140	.	AC_000091	506176	0	A	G	consensus_score=461.4	frequency=1	major_base=G	major_cov=48/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/68
RA	141	.	AC_000091	526296	1	.	G	bias_e_value=4339440	bias_p_value=0.933949	consensus_score=296.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.6593	major_base=G	major_cov=48/26	major_frequency=9.867e-01	minor_base=.	minor_cov=1/0	new_cov=48/26	polymorphism_frequency=9.867e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=1/0	total_cov=49/26
RA	142	.	AC_000091	547694	0	A	G	consensus_score=490.3	frequency=1	major_base=G	major_cov=60/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/65
RA	143	.	AC_000091	547831	1	.	G	bias_e_value=4645070	bias_p_value=0.999728	consensus_score=400.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.976783	major_base=G	major_cov=50/51	major_frequency=9.902e-01	minor_base=T	minor_cov=1/0	new_cov=50/51	polymorphism_frequency=9.902e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/1	total_cov=51/52
RA	144	.	AC_000091	556858	0	A	T	consensus_score=526.3	frequency=1	major_base=T	major_cov=74/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/53
RA	145	.	AC_000091	565784	0	T	C	bias_e_value=2399740	bias_p_value=0.51648	consensus_score=522.0	fisher_strand_p_value=0.448529	frequency=1	ks_quality_p_value=0.43845	major_base=C	major_cov=60/75	major_frequency=9.926e-01	minor_base=A	minor_cov=1/0	new_cov=60/75	polymorphism_frequency=9.926e-01	polymorphism_score=-4.9	prediction=consensus	ref_cov=0/0	total_cov=61/75
RA	146	.	AC_000091	706386	0	T	.	bias_e_value=4608910	bias_p_value=0.991945	consensus_score=603.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.875793	major_base=.	major_cov=58/58	major_frequency=9.915e-01	minor_base=T	minor_cov=1/0	new_cov=58/58	polymorphism_frequency=9.915e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/0	total_cov=59/58
RA	147	.	AC_000091	721062	0	C	T	bias_e_value=4646330	bias_p_value=1	consensus_score=442.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=65/48	major_frequency=9.912e-01	minor_base=C	minor_cov=1/0	new_cov=65/48	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=66/48
RA	148	.	AC_000091	737655	0	A	G	consensus_score=364.3	frequency=1	major_base=G	major_cov=50/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/66
RA	149	.	AC_000091	768787	0	A	G	consensus_score=640.3	frequency=1	major_base=G	major_cov=81/81	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=81/81	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/81
RA	150	.	AC_000091	771319	0	T	G	bias_e_value=0.003087	bias_p_value=6.64394e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.4	fisher_strand_p_value=2.61928e-11	frequency=3.469e-01	ks_quality_p_value=1	major_base=T	major_cov=23/41	major_frequency=6.531e-01	minor_base=G	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=3.469e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=23/41	total_cov=58/41
RA	151	.	AC_000091	778483	0	C	T	consensus_score=392.6	frequency=1	major_base=T	major_cov=47/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/49
RA	152	.	AC_000091	805405	0	A	G	consensus_score=414.7	frequency=1	major_base=G	major_cov=44/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/65
RA	153	.	AC_000091	840393	0	A	G	consensus_score=470.7	frequency=1	major_base=G	major_cov=75/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/45
RA	154	.	AC_000091	885798	0	A	G	consensus_score=470.9	frequency=1	major_base=G	major_cov=52/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/67
RA	155	.	AC_000091	901261	1	.	C	bias_e_value=4646330	bias_p_value=1	consensus_score=308.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=32/48	major_frequency=9.756e-01	minor_base=.	minor_cov=1/1	new_cov=32/48	polymorphism_frequency=9.756e-01	polymorphism_score=0.8	prediction=consensus	ref_cov=1/1	total_cov=33/49
RA	156	.	AC_000091	962866	0	A	G	consensus_score=440.0	frequency=1	major_base=G	major_cov=44/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/65
RA	157	.	AC_000091	963361	0	C	G	bias_e_value=3797640	bias_p_value=0.817341	consensus_score=433.6	fisher_strand_p_value=0.460177	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=51/61	major_frequency=9.912e-01	minor_base=T	minor_cov=1/0	new_cov=51/61	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/61
RA	158	.	AC_000091	1045186	0	A	G	consensus_score=506.4	frequency=1	major_base=G	major_cov=56/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/71
RA	159	.	AC_000091	1065700	0	C	T	consensus_score=604.7	frequency=1	major_base=T	major_cov=76/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/68
RA	160	.	AC_000091	1067795	0	A	G	bias_e_value=3818210	bias_p_value=0.821769	consensus_score=387.6	fisher_strand_p_value=0.475248	frequency=1	ks_quality_p_value=0.980393	major_base=G	major_cov=53/47	major_frequency=9.901e-01	minor_base=C	minor_cov=0/1	new_cov=53/47	polymorphism_frequency=9.901e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=53/48
RA	161	.	AC_000091	1072530	1	.	G	consensus_score=310.6	frequency=1	major_base=G	major_cov=41/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/39
RA	162	.	AC_000091	1091749	0	C	T	consensus_score=537.8	frequency=1	major_base=T	major_cov=63/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/71
RA	163	.	AC_000091	1093686	0	T	C	consensus_score=499.6	frequency=1	major_base=C	major_cov=60/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/66
RA	164	.	AC_000091	1132556	0	T	C	consensus_score=417.6	frequency=1	major_base=C	major_cov=66/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/39
RA	165	.	AC_000091	1132557	0	T	A	consensus_score=436.3	frequency=1	major_base=A	major_cov=66/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/39
RA	166	.	AC_000091	1132559	1	.	T	bias_e_value=983597	bias_p_value=0.211693	consensus_score=411.5	fisher_strand_p_value=0.626662	frequency=1	ks_quality_p_value=0.0862143	major_base=T	major_cov=64/37	major_frequency=9.619e-01	minor_base=.	minor_cov=2/2	new_cov=64/37	polymorphism_frequency=9.619e-01	polymorphism_score=9.1	prediction=consensus	ref_cov=2/2	total_cov=66/39
RA	167	.	AC_000091	1132560	0	G	T	consensus_score=428.1	frequency=1	major_base=T	major_cov=66/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/39
RA	168	.	AC_000091	1139747	1	.	G	consensus_score=419.5	frequency=1	major_base=G	major_cov=51/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/56
RA	169	.	AC_000091	1153927	0	A	G	consensus_score=460.4	frequency=1	major_base=G	major_cov=65/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/52
RA	170	.	AC_000091	1163018	0	T	G	bias_e_value=0.00569652	bias_p_value=1.22603e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.3	fisher_strand_p_value=4.95817e-11	frequency=2.358e-01	ks_quality_p_value=1	major_base=T	major_cov=24/57	major_frequency=7.642e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.358e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=24/57	total_cov=49/57
RA	171	.	AC_000091	1194589	0	A	G	consensus_score=409.7	frequency=1	major_base=G	major_cov=76/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/37
RA	172	.	AC_000091	1256829	0	A	G	consensus_score=505.1	frequency=1	major_base=G	major_cov=73/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/56
RA	173	.	AC_000091	1292378	0	T	C	consensus_score=419.8	frequency=1	major_base=C	major_cov=50/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/58
RA	174	.	AC_000091	1303712	0	A	G	consensus_score=522.3	frequency=1	major_base=G	major_cov=73/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/60
RA	175	.	AC_000091	1341506	0	A	G	consensus_score=464.4	frequency=1	major_base=G	major_cov=77/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/43
RA	176	.	AC_000091	1369160	0	A	G	consensus_score=451.1	frequency=1	major_base=G	major_cov=79/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/37
RA	177	.	AC_000091	1411407	0	G	A	consensus_score=445.3	frequency=1	major_base=A	major_cov=65/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/46
RA	178	.	AC_000091	1464570	0	G	.	consensus_score=515.0	frequency=1	major_base=.	major_cov=43/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/55
RA	179	.	AC_000091	1609104	0	A	G	consensus_score=431.8	frequency=1	major_base=G	major_cov=52/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	180	.	AC_000091	1620260	0	A	.	consensus_score=539.9	frequency=1	major_base=.	major_cov=55/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/48
RA	181	.	AC_000091	1644094	0	T	C	consensus_score=459.1	frequency=1	major_base=C	major_cov=57/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/59
RA	182	.	AC_000091	1676363	1	.	C	bias_e_value=4091130	bias_p_value=0.880507	consensus_score=382.5	fisher_strand_p_value=0.61761	frequency=1	ks_quality_p_value=0.895145	major_base=C	major_cov=51/49	major_frequency=9.615e-01	minor_base=.	minor_cov=1/3	new_cov=51/49	polymorphism_frequency=9.615e-01	polymorphism_score=9.4	prediction=consensus	ref_cov=1/3	total_cov=52/52
RA	183	.	AC_000091	1873445	0	C	T	consensus_score=537.3	frequency=1	major_base=T	major_cov=77/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/56
RA	184	.	AC_000091	1955601	0	T	C	consensus_score=452.3	frequency=1	major_base=C	major_cov=39/81	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/81	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/81
RA	185	.	AC_000091	2004055	0	A	C	bias_e_value=1.57617e-12	bias_p_value=3.3923e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=326.2	fisher_strand_p_value=7.15887e-21	frequency=2.741e-01	ks_quality_p_value=1	major_base=A	major_cov=82/16	major_frequency=7.259e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.741e-01	polymorphism_score=26.9	prediction=polymorphism	ref_cov=82/16	total_cov=82/53
RA	186	.	AC_000091	2060392	0	T	G	bias_e_value=0.00018244	bias_p_value=3.92654e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.6	fisher_strand_p_value=1.38729e-12	frequency=3.248e-01	ks_quality_p_value=1	major_base=T	major_cov=29/50	major_frequency=6.752e-01	minor_base=G	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=3.248e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=29/50	total_cov=68/50
RA	187	.	AC_000091	2153956	0	T	C	consensus_score=455.1	frequency=1	major_base=C	major_cov=64/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/54
RA	188	.	AC_000091	2226744	0	T	G	bias_e_value=4.20302	bias_p_value=9.0459e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.5	fisher_strand_p_value=5.08348e-08	frequency=2.447e-01	ks_quality_p_value=1	major_base=T	major_cov=28/43	major_frequency=7.553e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.447e-01	polymorphism_score=16.7	prediction=polymorphism	ref_cov=28/43	total_cov=51/43
RA	189	.	AC_000091	2248614	0	G	A	consensus_score=516.0	frequency=1	major_base=A	major_cov=62/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/71
RA	190	.	AC_000091	2249963	0	T	G	bias_e_value=0.00164828	bias_p_value=3.54748e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=280.0	fisher_strand_p_value=1.36345e-11	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=16/64	major_frequency=8.000e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.000e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=16/64	total_cov=36/64
RA	191	.	AC_000091	2265849	0	T	C	consensus_score=458.0	frequency=1	major_base=C	major_cov=56/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/57
RA	192	.	AC_000091	2331120	0	T	G	bias_e_value=2.8844e-08	bias_p_value=6.20791e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=282.7	fisher_strand_p_value=1.66286e-16	frequency=2.308e-01	ks_quality_p_value=1	major_base=T	major_cov=9/71	major_frequency=7.692e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.308e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=9/71	total_cov=33/71
RA	193	.	AC_000091	2354291	0	A	C	bias_e_value=8.42024e-12	bias_p_value=1.81223e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.7	fisher_strand_p_value=3.9678e-20	frequency=2.844e-01	ks_quality_p_value=1	major_base=A	major_cov=70/8	major_frequency=7.156e-01	minor_base=C	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.844e-01	polymorphism_score=29.2	prediction=polymorphism	ref_cov=70/8	total_cov=70/39
RA	194	.	AC_000091	2356229	0	G	A	bias_e_value=3721700	bias_p_value=0.800998	consensus_score=578.8	fisher_strand_p_value=0.439716	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=61/79	major_frequency=9.929e-01	minor_base=T	minor_cov=1/0	new_cov=61/79	polymorphism_frequency=9.929e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/79
RA	195	.	AC_000091	2364097	0	T	C	consensus_score=567.3	frequency=1	major_base=C	major_cov=74/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/70
RA	196	.	AC_000091	2528475	0	G	A	bias_e_value=4646330	bias_p_value=1	consensus_score=521.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=64/63	major_frequency=9.922e-01	minor_base=C	minor_cov=0/1	new_cov=64/63	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=65/64
RA	197	.	AC_000091	2532671	0	G	A	consensus_score=505.0	frequency=1	major_base=A	major_cov=60/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/63
RA	198	.	AC_000091	2569516	0	T	C	consensus_score=419.4	frequency=1	major_base=C	major_cov=54/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/53
RA	199	.	AC_000091	2587316	0	T	C	consensus_score=463.3	frequency=1	major_base=C	major_cov=73/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/44
RA	200	.	AC_000091	2634430	0	T	C	consensus_score=474.0	frequency=1	major_base=C	major_cov=47/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/73
RA	201	.	AC_000091	2651283	0	G	A	bias_e_value=3446990	bias_p_value=0.741874	consensus_score=522.7	fisher_strand_p_value=0.374046	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/82	major_frequency=9.924e-01	minor_base=G	minor_cov=1/0	new_cov=48/82	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/82
RA	202	.	AC_000091	2684473	1	.	A	bias_e_value=2176510	bias_p_value=0.468436	consensus_score=472.4	fisher_strand_p_value=0.426087	frequency=1	ks_quality_p_value=0.395286	major_base=A	major_cov=66/48	major_frequency=9.913e-01	minor_base=.	minor_cov=0/1	new_cov=66/48	polymorphism_frequency=9.913e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=0/1	total_cov=66/49
RA	203	.	AC_000091	2705226	0	G	A	bias_e_value=3652460	bias_p_value=0.786096	consensus_score=412.3	fisher_strand_p_value=0.422018	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=63/45	major_frequency=9.908e-01	minor_base=C	minor_cov=0/1	new_cov=63/45	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/46
RA	204	.	AC_000091	2708935	0	A	C	bias_e_value=5.63723e-07	bias_p_value=1.21326e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.8	fisher_strand_p_value=3.53982e-15	frequency=2.581e-01	ks_quality_p_value=1	major_base=A	major_cov=60/9	major_frequency=7.419e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.581e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=60/9	total_cov=60/33
RA	205	.	AC_000091	2804247	0	T	C	consensus_score=665.9	frequency=1	major_base=C	major_cov=72/94	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/94	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/94
RA	206	.	AC_000091	2817030	0	G	C	bias_e_value=8.1337	bias_p_value=1.75056e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.8	fisher_strand_p_value=1.03662e-07	frequency=2.742e-01	ks_quality_p_value=0.987888	major_base=G	major_cov=9/36	major_frequency=7.258e-01	minor_base=C	minor_cov=16/1	new_cov=16/1	polymorphism_frequency=2.742e-01	polymorphism_score=37.9	prediction=polymorphism	ref_cov=9/36	total_cov=25/37
RA	207	.	AC_000091	2857875	0	G	A	consensus_score=613.1	frequency=1	major_base=A	major_cov=76/80	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/80	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/80
RA	208	.	AC_000091	2868301	0	C	T	bias_e_value=4646330	bias_p_value=1	consensus_score=557.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=70/69	major_frequency=9.929e-01	minor_base=G	minor_cov=0/1	new_cov=70/69	polymorphism_frequency=9.929e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=71/71
RA	209	.	AC_000091	2886049	0	G	A	bias_e_value=3900040	bias_p_value=0.83938	consensus_score=398.9	fisher_strand_p_value=0.490566	frequency=1	ks_quality_p_value=0.998384	major_base=A	major_cov=51/54	major_frequency=9.906e-01	minor_base=G	minor_cov=1/0	new_cov=51/54	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=52/54
RA	210	.	AC_000091	2891667	0	T	C	bias_e_value=4646330	bias_p_value=1	consensus_score=482.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/76	major_frequency=9.921e-01	minor_base=T	minor_cov=0/1	new_cov=50/76	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=50/77
RA	211	.	AC_000091	2906975	0	C	G	consensus_score=451.4	frequency=1	major_base=G	major_cov=63/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/55
RA	212	.	AC_000091	2919665	0	G	A	bias_e_value=4646280	bias_p_value=0.999989	consensus_score=451.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995213	major_base=A	major_cov=63/59	major_frequency=9.919e-01	minor_base=G	minor_cov=1/0	new_cov=63/59	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=64/59
RA	213	.	AC_000091	2937297	0	G	A	bias_e_value=4646330	bias_p_value=1	consensus_score=487.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999875	major_base=A	major_cov=52/74	major_frequency=9.921e-01	minor_base=C	minor_cov=0/1	new_cov=52/74	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=52/76
RA	214	.	AC_000091	2949857	0	G	A	consensus_score=519.1	frequency=1	major_base=A	major_cov=64/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/66
RA	215	.	AC_000091	2987535	0	A	C	bias_e_value=4.88819e-14	bias_p_value=1.05205e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=297.7	fisher_strand_p_value=2.06563e-22	frequency=2.656e-01	ks_quality_p_value=1	major_base=A	major_cov=84/10	major_frequency=7.344e-01	minor_base=C	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=2.656e-01	polymorphism_score=26.0	prediction=polymorphism	ref_cov=84/10	total_cov=84/45
RA	216	.	AC_000091	3100536	0	A	G	consensus_score=521.5	frequency=1	major_base=G	major_cov=54/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/77
RA	217	.	AC_000091	3123098	0	A	G	consensus_score=436.2	frequency=1	major_base=G	major_cov=49/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/61
RA	218	.	AC_000091	3127881	0	G	A	consensus_score=517.2	frequency=1	major_base=A	major_cov=75/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=75/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/54
RA	219	.	AC_000091	3153326	0	G	A	consensus_score=522.9	frequency=1	major_base=A	major_cov=73/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/57
RA	220	.	AC_000091	3169789	0	G	A	consensus_score=505.3	frequency=1	major_base=A	major_cov=59/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/67
RA	221	.	AC_000091	3215778	0	T	C	consensus_score=509.5	frequency=1	major_base=C	major_cov=74/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/55
RA	222	.	AC_000091	3222265	0	T	C	consensus_score=384.6	frequency=1	major_base=C	major_cov=49/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/49
RA	223	.	AC_000091	3247179	0	T	C	consensus_score=564.0	frequency=1	major_base=C	major_cov=85/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/60
RA	224	.	AC_000091	3259711	0	A	C	bias_e_value=8.12886e-08	bias_p_value=1.74952e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.5	fisher_strand_p_value=4.8239e-16	frequency=2.903e-01	ks_quality_p_value=1	major_base=A	major_cov=57/9	major_frequency=7.097e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.903e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=57/9	total_cov=57/36
RA	225	.	AC_000091	3266304	0	T	C	bias_e_value=3883400	bias_p_value=0.835799	consensus_score=495.0	fisher_strand_p_value=0.484848	frequency=1	ks_quality_p_value=0.999884	major_base=C	major_cov=68/63	major_frequency=9.924e-01	minor_base=T	minor_cov=0/1	new_cov=68/63	polymorphism_frequency=9.924e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=68/64
RA	226	.	AC_000091	3350708	0	A	C	bias_e_value=6.50907e-07	bias_p_value=1.4009e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=307.5	fisher_strand_p_value=4.10503e-15	frequency=2.782e-01	ks_quality_p_value=1	major_base=A	major_cov=67/29	major_frequency=7.218e-01	minor_base=C	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.782e-01	polymorphism_score=20.5	prediction=polymorphism	ref_cov=67/29	total_cov=67/66
RA	227	.	AC_000091	3402600	0	G	A	consensus_score=565.2	frequency=1	major_base=A	major_cov=66/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/75
RA	228	.	AC_000091	3405975	0	C	T	consensus_score=480.6	frequency=1	major_base=T	major_cov=68/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/55
RA	229	.	AC_000091	3543547	0	A	C	bias_e_value=8.46353e-13	bias_p_value=1.82155e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.8	fisher_strand_p_value=3.79323e-21	frequency=3.846e-01	ks_quality_p_value=1	major_base=A	major_cov=56/8	major_frequency=6.154e-01	minor_base=C	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.846e-01	polymorphism_score=35.9	prediction=polymorphism	ref_cov=56/8	total_cov=56/48
RA	230	.	AC_000091	3557661	0	A	G	consensus_score=492.6	frequency=1	major_base=G	major_cov=67/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/55
RA	231	.	AC_000091	3624613	0	T	C	consensus_score=441.1	frequency=1	major_base=C	major_cov=56/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/59
RA	232	.	AC_000091	3636914	0	T	C	consensus_score=510.3	frequency=1	major_base=C	major_cov=67/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/70
RA	233	.	AC_000091	3656842	0	G	A	consensus_score=564.7	frequency=1	major_base=A	major_cov=68/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/69
RA	234	.	AC_000091	3676780	0	A	C	bias_e_value=0.0107744	bias_p_value=2.3189e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.6	fisher_strand_p_value=9.63684e-11	frequency=3.505e-01	ks_quality_p_value=1	major_base=A	major_cov=39/24	major_frequency=6.495e-01	minor_base=C	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.505e-01	polymorphism_score=28.4	prediction=polymorphism	ref_cov=39/24	total_cov=39/58
RA	235	.	AC_000091	3711417	0	G	A	consensus_score=511.9	frequency=1	major_base=A	major_cov=55/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/76
RA	236	.	AC_000091	3725678	0	G	A	consensus_score=366.7	frequency=1	major_base=A	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	237	.	AC_000091	3912296	1	.	G	bias_e_value=817699	bias_p_value=0.175988	consensus_score=163.8	fisher_strand_p_value=0.0555556	frequency=1	ks_quality_p_value=0.7608	major_base=G	major_cov=34/9	major_frequency=9.556e-01	minor_base=.	minor_cov=0/2	new_cov=34/9	polymorphism_frequency=9.556e-01	polymorphism_score=2.4	prediction=consensus	ref_cov=0/2	total_cov=34/11
RA	238	.	AC_000091	3912296	2	.	G	bias_e_value=1360080	bias_p_value=0.292722	consensus_score=140.3	fisher_strand_p_value=0.0850799	frequency=1	ks_quality_p_value=0.990436	major_base=G	major_cov=30/7	major_frequency=8.222e-01	minor_base=.	minor_cov=4/4	new_cov=30/7	polymorphism_frequency=8.222e-01	polymorphism_score=30.9	prediction=consensus	ref_cov=4/4	total_cov=34/11
RA	239	.	AC_000091	3962968	0	A	C	bias_e_value=4.0914e-05	bias_p_value=8.80565e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=327.0	fisher_strand_p_value=2.94978e-13	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=69/39	major_frequency=7.500e-01	minor_base=C	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.500e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=69/39	total_cov=69/77
RA	240	.	AC_000091	4017654	0	C	T	consensus_score=113.3	frequency=1	major_base=T	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	241	.	AC_000091	4051195	0	C	T	bias_e_value=4026910	bias_p_value=0.866685	consensus_score=484.7	fisher_strand_p_value=0.533832	frequency=1	ks_quality_p_value=0.993412	major_base=T	major_cov=45/77	major_frequency=9.839e-01	minor_base=C	minor_cov=0/2	new_cov=45/77	polymorphism_frequency=9.839e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/2	total_cov=45/79
RA	242	.	AC_000091	4076934	0	A	C	bias_e_value=1.34003e-16	bias_p_value=2.88406e-23	consensus_reject=FREQUENCY_CUTOFF	consensus_score=339.2	fisher_strand_p_value=5.06487e-25	frequency=2.752e-01	ks_quality_p_value=1	major_base=A	major_cov=94/14	major_frequency=7.248e-01	minor_base=C	minor_cov=0/41	new_cov=0/41	polymorphism_frequency=2.752e-01	polymorphism_score=33.8	prediction=polymorphism	ref_cov=94/14	total_cov=94/56
RA	243	.	AC_000091	4144590	0	A	G	consensus_score=493.3	frequency=1	major_base=G	major_cov=54/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/72
RA	244	.	AC_000091	4147012	0	A	C	bias_e_value=0.0783697	bias_p_value=1.6867e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.1	fisher_strand_p_value=7.67086e-10	frequency=2.411e-01	ks_quality_p_value=1	major_base=A	major_cov=53/32	major_frequency=7.589e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.411e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=53/32	total_cov=53/60
RA	245	.	AC_000091	4245382	0	C	T	consensus_score=644.1	frequency=1	major_base=T	major_cov=93/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=93/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=93/71
RA	246	.	AC_000091	4278307	0	C	T	bias_e_value=4646320	bias_p_value=0.999998	consensus_score=737.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998132	major_base=T	major_cov=120/64	major_frequency=9.892e-01	minor_base=A	minor_cov=1/1	new_cov=120/64	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=121/65
RA	247	.	AC_000091	4343161	0	A	G	consensus_score=584.4	frequency=1	major_base=G	major_cov=72/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/77
RA	248	.	AC_000091	4344956	0	G	A	bias_e_value=3765320	bias_p_value=0.810386	consensus_score=444.1	fisher_strand_p_value=0.451327	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=62/50	major_frequency=9.912e-01	minor_base=T	minor_cov=0/1	new_cov=62/50	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/51
RA	249	.	AC_000091	4357741	0	A	G	consensus_score=482.1	frequency=1	major_base=G	major_cov=56/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/65
RA	250	.	AC_000091	4371271	0	A	.	bias_e_value=3012180	bias_p_value=0.648291	consensus_score=577.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.289441	major_base=.	major_cov=47/63	major_frequency=9.910e-01	minor_base=A	minor_cov=0/1	new_cov=47/63	polymorphism_frequency=9.910e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/1	total_cov=47/64
RA	251	.	AC_000091	4371272	0	A	.	bias_e_value=4153580	bias_p_value=0.893947	consensus_score=577.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.576359	major_base=.	major_cov=47/63	major_frequency=9.910e-01	minor_base=A	minor_cov=0/1	new_cov=47/63	polymorphism_frequency=9.910e-01	polymorphism_score=-2.1	prediction=consensus	ref_cov=0/1	total_cov=47/64
RA	252	.	AC_000091	4381155	0	C	T	consensus_score=682.4	frequency=1	major_base=T	major_cov=73/92	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/92	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/92
RA	253	.	AC_000091	4419586	0	T	G	bias_e_value=4.08574e-06	bias_p_value=8.79348e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.1	fisher_strand_p_value=2.72813e-14	frequency=2.685e-01	ks_quality_p_value=1	major_base=T	major_cov=18/61	major_frequency=7.315e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.685e-01	polymorphism_score=23.3	prediction=polymorphism	ref_cov=18/61	total_cov=47/61
RA	254	.	AC_000091	4444533	0	C	T	consensus_score=578.7	frequency=1	major_base=T	major_cov=60/86	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/86	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/86
RA	255	.	AC_000091	4558099	0	T	C	consensus_score=504.3	frequency=1	major_base=C	major_cov=56/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/73
RA	256	.	AC_000091	4585127	1	.	A	consensus_score=476.3	frequency=1	major_base=A	major_cov=48/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/68
RA	257	.	AC_000091	4642006	0	G	A	bias_e_value=3809390	bias_p_value=0.81987	consensus_score=377.8	fisher_strand_p_value=0.490196	frequency=1	ks_quality_p_value=0.945439	major_base=A	major_cov=52/49	major_frequency=9.902e-01	minor_base=C	minor_cov=0/1	new_cov=52/49	polymorphism_frequency=9.902e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=52/51
MC	258	.	AC_000091	654214	655412	1197	0	left_inside_cov=0	left_outside_cov=148	right_inside_cov=0	right_outside_cov=149
MC	259	.	AC_000091	1301041	1302407	1329	0	left_inside_cov=0	left_outside_cov=152	right_inside_cov=0	right_outside_cov=114
MC	260	.	AC_000091	1397797	1401959	1160	0	left_inside_cov=66	left_outside_cov=69	right_inside_cov=0	right_outside_cov=170
MC	261	.	AC_000091	1413639	1436698	0	0	left_inside_cov=0	left_outside_cov=143	right_inside_cov=0	right_outside_cov=140
MC	262	.	AC_000091	2320795	2322130	1330	0	left_inside_cov=0	left_outside_cov=139	right_inside_cov=0	right_outside_cov=141
MC	263	.	AC_000091	3261134	3262332	1193	0	left_inside_cov=0	left_outside_cov=160	right_inside_cov=0	right_outside_cov=160
MC	264	.	AC_000091	3690506	3693239	260	545	left_inside_cov=68	left_outside_cov=70	right_inside_cov=67	right_outside_cov=72
MC	265	.	AC_000091	3742936	3744271	1328	0	left_inside_cov=0	left_outside_cov=165	right_inside_cov=0	right_outside_cov=166
JC	266	.	AC_000091	1	1	AC_000091	4646332	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=58	coverage_plus=87	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=88	key=AC_000091__1__1__AC_000091__4646332__-1__0____90__90__0__0	max_left=89	max_left_minus=89	max_left_plus=89	max_min_left=43	max_min_left_minus=43	max_min_left_plus=38	max_min_right=44	max_min_right_minus=44	max_min_right_plus=44	max_pos_hash_score=178	max_right=89	max_right_minus=89	max_right_plus=89	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.08	new_junction_read_count=145	polymorphism_frequency=1.000e+00	pos_hash_score=99	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=88	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=88	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=145
JC	267	.	AC_000091	654213	-1	AC_000091	655413	1	0	alignment_overlap=5	coverage_minus=73	coverage_plus=63	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=83	key=AC_000091__654213__-1__AC_000091__655408__1__5____90__90__0__0	max_left=84	max_left_minus=84	max_left_plus=83	max_min_left=42	max_min_left_minus=39	max_min_left_plus=42	max_min_right=42	max_min_right_minus=42	max_min_right_plus=42	max_pos_hash_score=168	max_right=84	max_right_minus=84	max_right_plus=84	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.08	new_junction_read_count=136	polymorphism_frequency=1.000e+00	pos_hash_score=92	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=88	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=83	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=136
JC	268	.	AC_000091	1209367	1	AC_000091	1211196	1	0	alignment_overlap=16	coverage_minus=42	coverage_plus=44	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=72	key=AC_000091__1209367__1__AC_000091__1211180__1__16____90__90__0__0	max_left=73	max_left_minus=73	max_left_plus=73	max_min_left=36	max_min_left_minus=36	max_min_left_plus=35	max_min_right=37	max_min_right_minus=35	max_min_right_plus=37	max_pos_hash_score=146	max_right=73	max_right_minus=73	max_right_plus=72	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.79	new_junction_read_count=86	polymorphism_frequency=8.342e-01	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.16	side_1_overlap=16	side_1_possible_overlap_registers=88	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.16	side_2_overlap=0	side_2_possible_overlap_registers=72	side_2_read_count=17	side_2_redundant=0	total_non_overlap_reads=86
JC	269	.	AC_000091	1209382	-1	AC_000091	1211179	-1	0	alignment_overlap=16	coverage_minus=31	coverage_plus=28	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=72	key=AC_000091__1209382__-1__AC_000091__1211195__-1__16____90__90__0__0	max_left=72	max_left_minus=70	max_left_plus=72	max_min_left=36	max_min_left_minus=36	max_min_left_plus=36	max_min_right=37	max_min_right_minus=37	max_min_right_plus=32	max_pos_hash_score=146	max_right=72	max_right_minus=72	max_right_plus=63	neg_log10_pos_hash_p_value=2.3	new_junction_coverage=0.54	new_junction_read_count=59	polymorphism_frequency=7.754e-01	pos_hash_score=49	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.16	side_1_overlap=16	side_1_possible_overlap_registers=88	side_1_read_count=21	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.16	side_2_overlap=0	side_2_possible_overlap_registers=72	side_2_read_count=17	side_2_redundant=0	total_non_overlap_reads=59
JC	270	.	AC_000091	1301040	-1	AC_000091	4311564	-1	-28	alignment_overlap=-28	coverage_minus=54	coverage_plus=45	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=60	key=AC_000091__1301040__-1__AC_000091__4311564__-1__-28__TTAATTCCACTGCCTTTGGTAGAGGAAA__90__90__0__1	max_left=60	max_left_minus=60	max_left_plus=59	max_min_left=30	max_min_left_minus=30	max_min_left_plus=28	max_min_right=30	max_min_right_minus=30	max_min_right_plus=28	max_pos_hash_score=122	max_right=59	max_right_minus=58	max_right_plus=59	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=68	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=88	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=99	unique_read_sequence=TTAATTCCACTGCCTTTGGTAGAGGAAA
JC	271	.	AC_000091	1302408	1	AC_000091	1397758	1	0	alignment_overlap=0	coverage_minus=49	coverage_plus=54	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=88	key=AC_000091__1302408__1__AC_000091__1397758__1__0____90__90__0__1	max_left=89	max_left_minus=82	max_left_plus=89	max_min_left=44	max_min_left_minus=44	max_min_left_plus=44	max_min_right=44	max_min_right_minus=43	max_min_right_plus=44	max_pos_hash_score=178	max_right=84	max_right_minus=84	max_right_plus=84	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.84	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=88	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=103
JC	272	.	AC_000091	1398951	-1	AC_000091	1401960	1	0	alignment_overlap=1	coverage_minus=60	coverage_plus=60	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=87	key=AC_000091__1398952__-1__AC_000091__1401960__1__1____90__90__1__0	max_left=83	max_left_minus=82	max_left_plus=83	max_min_left=43	max_min_left_minus=43	max_min_left_plus=42	max_min_right=44	max_min_right_minus=44	max_min_right_plus=42	max_pos_hash_score=176	max_right=88	max_right_minus=88	max_right_plus=87	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=1.17	new_junction_read_count=155	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=88	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=120
JC	273	.	AC_000091	1413638	-1	AC_000091	1436699	1	0	alignment_overlap=26	coverage_minus=45	coverage_plus=53	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=62	key=AC_000091__1413638__-1__AC_000091__1436673__1__26____90__90__0__0	max_left=63	max_left_minus=63	max_left_plus=63	max_min_left=31	max_min_left_minus=31	max_min_left_plus=28	max_min_right=32	max_min_right_minus=30	max_min_right_plus=32	max_pos_hash_score=126	max_right=57	max_right_minus=57	max_right_plus=57	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.04	new_junction_read_count=98	polymorphism_frequency=1.000e+00	pos_hash_score=71	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=26	side_1_possible_overlap_registers=88	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=62	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=98
JC	274	.	AC_000091	2176982	-1	AC_000091	2178182	1	0	alignment_overlap=5	coverage_minus=64	coverage_plus=54	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=83	key=AC_000091__2176982__-1__AC_000091__2178177__1__5____90__90__0__0	max_left=84	max_left_minus=83	max_left_plus=84	max_min_left=41	max_min_left_minus=41	max_min_left_plus=40	max_min_right=41	max_min_right_minus=41	max_min_right_plus=40	max_pos_hash_score=168	max_right=83	max_right_minus=83	max_right_plus=82	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.94	new_junction_read_count=119	polymorphism_frequency=1.000e+00	pos_hash_score=82	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=88	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=83	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=118
JC	275	.	AC_000091	2320794	-1	AC_000091	2322131	1	0	alignment_overlap=6	coverage_minus=62	coverage_plus=66	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=82	key=AC_000091__2320794__-1__AC_000091__2322125__1__6____90__90__0__0	max_left=83	max_left_minus=82	max_left_plus=83	max_min_left=40	max_min_left_minus=39	max_min_left_plus=40	max_min_right=42	max_min_right_minus=42	max_min_right_plus=42	max_pos_hash_score=166	max_right=83	max_right_minus=82	max_right_plus=83	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.03	new_junction_read_count=129	polymorphism_frequency=1.000e+00	pos_hash_score=89	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=88	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=82	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=128
JC	276	.	AC_000091	3261133	-1	AC_000091	3262333	1	0	alignment_overlap=4	coverage_minus=70	coverage_plus=86	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=84	key=AC_000091__3261133__-1__AC_000091__3262329__1__4____90__90__0__0	max_left=85	max_left_minus=85	max_left_plus=84	max_min_left=42	max_min_left_minus=42	max_min_left_plus=42	max_min_right=43	max_min_right_minus=43	max_min_right_plus=43	max_pos_hash_score=170	max_right=85	max_right_minus=83	max_right_plus=85	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.22	new_junction_read_count=156	polymorphism_frequency=1.000e+00	pos_hash_score=104	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=88	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=84	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=156
JC	277	.	AC_000091	3742935	-1	AC_000091	3744272	1	0	alignment_overlap=8	coverage_minus=102	coverage_plus=47	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=80	key=AC_000091__3742935__-1__AC_000091__3744264__1__8____90__90__0__0	max_left=81	max_left_minus=80	max_left_plus=81	max_min_left=40	max_min_left_minus=40	max_min_left_plus=38	max_min_right=41	max_min_right_minus=41	max_min_right_plus=39	max_pos_hash_score=162	max_right=81	max_right_minus=81	max_right_plus=79	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=151	polymorphism_frequency=1.000e+00	pos_hash_score=91	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=88	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=80	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=149
JC	278	.	AC_000091	3746910	-1	AC_000091	3748110	1	0	alignment_overlap=4	coverage_minus=62	coverage_plus=54	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=84	key=AC_000091__3746910__-1__AC_000091__3748106__1__4____90__90__0__0	max_left=85	max_left_minus=85	max_left_plus=85	max_min_left=38	max_min_left_minus=38	max_min_left_plus=38	max_min_right=43	max_min_right_minus=41	max_min_right_plus=43	max_pos_hash_score=170	max_right=84	max_right_minus=84	max_right_plus=83	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.92	new_junction_read_count=117	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=88	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=84	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=116
JC	279	.	AC_000091	3748316	1	AC_000091	4056987	-1	0	alignment_overlap=0	coverage_minus=81	coverage_plus=81	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=88	key=AC_000091__3748316__1__AC_000091__4056987__-1__0____90__90__0__1	max_left=89	max_left_minus=89	max_left_plus=89	max_min_left=44	max_min_left_minus=44	max_min_left_plus=44	max_min_right=45	max_min_right_minus=44	max_min_right_plus=45	max_pos_hash_score=178	max_right=89	max_right_minus=89	max_right_plus=89	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.22	new_junction_read_count=163	polymorphism_frequency=9.314e-01	pos_hash_score=108	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.09	side_1_overlap=0	side_1_possible_overlap_registers=88	side_1_read_count=12	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=162
JC	280	.	AC_000091	3748324	-1	AC_000091	4056220	1	0	alignment_overlap=0	coverage_minus=85	coverage_plus=57	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=88	key=AC_000091__3748324__-1__AC_000091__4056220__1__0____90__90__0__1	max_left=89	max_left_minus=88	max_left_plus=89	max_min_left=44	max_min_left_minus=44	max_min_left_plus=43	max_min_right=45	max_min_right_minus=45	max_min_right_plus=44	max_pos_hash_score=178	max_right=89	max_right_minus=89	max_right_plus=89	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.06	new_junction_read_count=142	polymorphism_frequency=8.875e-01	pos_hash_score=99	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.13	side_1_overlap=0	side_1_possible_overlap_registers=88	side_1_read_count=18	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=142
JC	281	.	AC_000091	3750590	-1	AC_000091	3751790	1	0	alignment_overlap=4	coverage_minus=69	coverage_plus=92	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=84	key=AC_000091__3750590__-1__AC_000091__3751786__1__4____90__90__0__0	max_left=85	max_left_minus=85	max_left_plus=85	max_min_left=42	max_min_left_minus=42	max_min_left_plus=41	max_min_right=42	max_min_right_minus=42	max_min_right_plus=42	max_pos_hash_score=170	max_right=84	max_right_minus=84	max_right_plus=83	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.27	new_junction_read_count=162	polymorphism_frequency=1.000e+00	pos_hash_score=93	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=88	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=84	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=161
JC	282	.	AC_000091	4056221	1	AC_000091	4370787	1	0	alignment_overlap=1	coverage_minus=84	coverage_plus=70	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=87	key=AC_000091__4056220__1__AC_000091__4370787__1__1____90__90__1__0	max_left=88	max_left_minus=87	max_left_plus=88	max_min_left=44	max_min_left_minus=44	max_min_left_plus=44	max_min_right=44	max_min_right_minus=44	max_min_right_plus=43	max_pos_hash_score=176	max_right=88	max_right_minus=87	max_right_plus=88	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=155	polymorphism_frequency=9.234e-01	pos_hash_score=99	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.10	side_2_overlap=1	side_2_possible_overlap_registers=88	side_2_read_count=13	side_2_redundant=0	total_non_overlap_reads=154
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JC	284	.	AC_000091	4310362	-1	AC_000091	4311562	1	0	alignment_overlap=4	coverage_minus=49	coverage_plus=80	flanking_left=90	flanking_right=90	frequency=1	junction_possible_overlap_registers=84	key=AC_000091__4310362__-1__AC_000091__4311558__1__4____90__90__0__0	max_left=85	max_left_minus=85	max_left_plus=84	max_min_left=42	max_min_left_minus=42	max_min_left_plus=42	max_min_right=43	max_min_right_minus=42	max_min_right_plus=43	max_pos_hash_score=170	max_right=84	max_right_minus=82	max_right_plus=84	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.01	new_junction_read_count=129	polymorphism_frequency=9.885e-01	pos_hash_score=85	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=88	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=84	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=129
JC	285	.	AC_000091	4547362	1	AC_000091	4547676	1	0	alignment_overlap=9	coverage_minus=11	coverage_plus=15	flanking_left=90	flanking_right=90	frequency=2.019e-01	junction_possible_overlap_registers=79	key=AC_000091__4547362__1__AC_000091__4547667__1__9____90__90__0__0	max_left=78	max_left_minus=78	max_left_plus=75	max_min_left=40	max_min_left_minus=37	max_min_left_plus=40	max_min_right=38	max_min_right_minus=23	max_min_right_plus=38	max_pos_hash_score=160	max_right=77	max_right_minus=68	max_right_plus=77	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.22	new_junction_read_count=26	polymorphism_frequency=2.019e-01	pos_hash_score=25	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=9	side_1_possible_overlap_registers=88	side_1_read_count=122	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=79	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=26
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