|
| position |
mutation |
breseq |
GATK_CNVnator |
annotation |
gene |
description |
| 257,908 |
Δ776 bp |
100% | |
|
[crl] |
[crl] |
| 348,458 |
IS5 (+) +4 bp |
12.2% | |
intergenic (‑15/‑221) |
prpR ← / → prpB |
propionate catabolism operon regulatory protein/2‑methylisocitrate lyase |
| 458,790 |
IS186 (–) +6 bp :: Δ1 bp |
100% | |
intergenic (+90/‑93) |
clpX → / → lon |
ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| 1,196,305 |
C→T |
100% | 100% |
R395C (CGT→TGT) |
icd → |
isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| 1,269,231 |
T→C |
5.3% | |
A15A (GCA→GCG) |
ldrA ← |
toxic polypeptide, small |
| 1,269,856 |
G→T |
8.3% | |
intergenic (‑46/‑2) |
ldrB ← / → rdlB |
toxic polypeptide, small/sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR‑B repeat, with toxic peptide LdrB |
| 1,269,858:1 |
+T |
5.3% | |
noncoding (1/66 nt) |
rdlB → |
sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR‑B repeat, with toxic peptide LdrB |
| 1,286,793 |
A→G |
6.1% | |
intergenic (+267/+273) |
narI → / ← rttR |
nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| 1,293,032 |
IS1 (–) +8 bp |
100% | |
intergenic (‑110/‑488) |
hns ← / → tdk |
global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| 1,299,499 |
Δ1,199 bp |
100% | |
intergenic (+254/‑485) |
ychE → / → oppA |
UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| 1,978,503 |
Δ776 bp |
100% | |
|
insB1–insA |
insB1, insA |
| 1,979,486 |
IS5 (+) +4 bp |
100% | |
intergenic (‑271/‑264) |
insA ← / → uspC |
IS1 repressor TnpA/universal stress protein |
| 1,988,454 |
A→G |
5.8% | |
N78S (AAC→AGC) |
yecR → |
lipoprotein, function unknown |
| 2,132,787 |
A→C |
100% | 100% |
I204S (ATC→AGC) |
wcaA ← |
putative glycosyl transferase |
| 2,173,361 |
Δ2 bp |
100% | |
pseudogene (1‑2/442 nt) |
gatC ← |
pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| 2,173,363 |
Δ2 bp |
| 100% |
intergenic (‑1/+1) |
gatC ← / ← gatC |
pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| 2,490,736 |
Δ1 bp |
6.9% | |
coding (1215/1695 nt) |
oxc ← |
oxalyl CoA decarboxylase, ThDP‑dependent |
| 2,600,619 |
Δ1 bp |
13.4% | |
coding (142/471 nt) |
bcp → |
peroxiredoxin; thiol peroxidase, thioredoxin‑dependent |
| 3,213,426 |
T→G |
7.3% | |
I127S (ATC→AGC) |
rpoD → |
RNA polymerase, sigma 70 (sigma D) factor |
| 3,213,792 |
T→G |
14.1% | |
I249S (ATC→AGC) |
rpoD → |
RNA polymerase, sigma 70 (sigma D) factor |
| 3,486,714 |
G→A |
16.1% | |
A199T (GCA→ACA) |
crp → |
cAMP‑activated global transcription factor, mediator of catabolite repression |
| 3,560,455:1 |
+G |
100% | 100% |
intergenic (‑2/+1) |
glpR ← / ← glpR |
pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| 3,769,857 |
T→A |
33.3% | |
intergenic (+74/‑91) |
yibV → / → yibU |
pseudogene, putative cryptic Rhs immunity protein/pseudogene, H repeat‑associated protein |
| 3,796,101 |
Δ12,500 bp |
| 100% |
|
[waaC]–[waaA] |
[waaC], waaL, waaU, waaZ, waaY, waaR, waaO, waaB, waaS, waaP, waaG, waaQ, [waaA] |
| 3,815,859 |
Δ82 bp |
100% | 96.2% |
|
[rph]–[rph] |
[rph], [rph] |
| 4,001,645 |
Δ5 bp |
100% | 100% |
coding (220‑224/951 nt) |
corA → |
magnesium/nickel/cobalt transporter |
| 4,049,912 |
IS2 (+) +5 bp |
100% | |
noncoding (14‑18/109 nt) |
spf → |
Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| 4,184,543 |
C→A |
100% | 100% |
P1100Q (CCG→CAG) |
rpoB → |
RNA polymerase, beta subunit |
| 4,233,801 |
Δ1,600 bp |
| 100% |
coding (44‑1643/1650 nt) |
pgi → |
glucosephosphate isomerase |
| 4,277,820 |
G→T |
100% | 100% |
G118* (GGA→TGA) |
soxR → |
redox‑sensitive transcriptional activator of soxS; autorepressor |
| 4,296,060 |
C→T |
10.3% | |
intergenic (+266/+376) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| 4,296,190 |
A→G |
22.0% | |
intergenic (+396/+246) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| 4,296,191 |
A→C |
22.4% | |
intergenic (+397/+245) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| 4,296,268 |
T→C |
28.6% | |
intergenic (+474/+168) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| 4,296,286 |
C→T |
14.4% | |
intergenic (+492/+150) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| 4,296,303 |
A→G |
10.4% | |
intergenic (+509/+133) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| 4,296,304 |
A→C |
10.5% | |
intergenic (+510/+132) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| 4,296,380:1 |
+CG |
100% | |
intergenic (+586/+56) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| 4,296,381 |
+GC |
| 100% |
intergenic (+587/+55) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| 4,326,041 |
C→T |
5.5% | |
intergenic (‑300/+358) |
yjdN ← / ← yjdM |
metalloprotein superfamily protein/zinc‑ribbon family protein |
| 4,326,047 |
C→T |
8.4% | |
intergenic (‑306/+352) |
yjdN ← / ← yjdM |
metalloprotein superfamily protein/zinc‑ribbon family protein |
| 4,326,088 |
T→G |
8.4% | |
intergenic (‑347/+311) |
yjdN ← / ← yjdM |
metalloprotein superfamily protein/zinc‑ribbon family protein |
| 4,326,141 |
T→C |
9.7% | |
intergenic (‑400/+258) |
yjdN ← / ← yjdM |
metalloprotein superfamily protein/zinc‑ribbon family protein |
| 4,326,147 |
T→C |
7.9% | |
intergenic (‑406/+252) |
yjdN ← / ← yjdM |
metalloprotein superfamily protein/zinc‑ribbon family protein |