#=GENOME_DIFF	1.0
#=CREATED	17:14:57 16 Mar 2023
#=PROGRAM	breseq 0.35.4 revision f352f80f4bc9
#=COMMAND	/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 2 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/NZ_CP009273_1.gb /var/alemutpipe-outputs/good/SRR9723031_R1.good.fq /var/alemutpipe-outputs/good/SRR9723031_R2.good.fq
#=REFSEQ	/var/data/NZ_CP009273_1.gb
#=READSEQ	/var/alemutpipe-outputs/good/SRR9723031_R1.good.fq
#=READSEQ	/var/alemutpipe-outputs/good/SRR9723031_R2.good.fq
#=CONVERTED-BASES	485742584
#=CONVERTED-READS	1949798
#=INPUT-BASES	485742584
#=INPUT-READS	1949798
#=MAPPED-BASES	470852097
#=MAPPED-READS	1891076
SNP	1	74	NZ_CP009273	874860	A
SNP	2	129	NZ_CP009273	1431900	A
RA	3	.	NZ_CP009273	5115	0	G	A	bias_e_value=0.0420802	bias_p_value=9.08572e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.3	fisher_strand_p_value=4.04023e-10	frequency=2.099e-01	ks_quality_p_value=0.993463	major_base=G	major_cov=52/12	major_frequency=7.901e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.099e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=52/12	total_cov=52/29
RA	4	.	NZ_CP009273	5123	0	C	A	bias_e_value=0.0423449	bias_p_value=9.14286e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.9	fisher_strand_p_value=4.04023e-10	frequency=2.099e-01	ks_quality_p_value=1	major_base=C	major_cov=52/12	major_frequency=7.901e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.099e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=52/12	total_cov=52/30
RA	5	.	NZ_CP009273	5159	0	G	A	bias_e_value=1.86979e-08	bias_p_value=4.03713e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.5	fisher_strand_p_value=1.06873e-16	frequency=2.987e-01	ks_quality_p_value=1	major_base=G	major_cov=51/3	major_frequency=7.013e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.987e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=51/3	total_cov=51/26
RA	6	.	NZ_CP009273	5162	0	T	A	bias_e_value=0.00116708	bias_p_value=2.51989e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.5	fisher_strand_p_value=9.55446e-12	frequency=2.338e-01	ks_quality_p_value=1	major_base=T	major_cov=51/8	major_frequency=7.662e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.338e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=51/8	total_cov=51/26
RA	7	.	NZ_CP009273	12486	0	G	A	bias_e_value=15.2043	bias_p_value=3.28282e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.8	fisher_strand_p_value=1.9986e-07	frequency=2.593e-01	ks_quality_p_value=1	major_base=G	major_cov=37/23	major_frequency=7.407e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.593e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=37/23	total_cov=37/44
RA	8	.	NZ_CP009273	17000	0	C	T	bias_e_value=0.00547553	bias_p_value=1.18224e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.0	fisher_strand_p_value=5.86897e-11	frequency=2.644e-01	ks_quality_p_value=0.813396	major_base=C	major_cov=48/16	major_frequency=7.356e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.644e-01	polymorphism_score=20.3	prediction=polymorphism	ref_cov=48/16	total_cov=49/39
RA	9	.	NZ_CP009273	17041	0	G	C	bias_e_value=0.59522	bias_p_value=1.28516e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.6	fisher_strand_p_value=6.47252e-09	frequency=2.209e-01	ks_quality_p_value=1	major_base=G	major_cov=48/19	major_frequency=7.791e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.209e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=48/19	total_cov=48/38
RA	10	.	NZ_CP009273	29447	0	C	T	bias_e_value=0.0185169	bias_p_value=3.99806e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.2	fisher_strand_p_value=1.70172e-10	frequency=2.410e-01	ks_quality_p_value=1	major_base=C	major_cov=49/14	major_frequency=7.590e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.410e-01	polymorphism_score=26.2	prediction=polymorphism	ref_cov=49/14	total_cov=49/34
RA	11	.	NZ_CP009273	29468	0	T	A	bias_e_value=0.00372227	bias_p_value=8.03692e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.8	fisher_strand_p_value=3.19339e-11	frequency=2.532e-01	ks_quality_p_value=1	major_base=T	major_cov=48/11	major_frequency=7.468e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.532e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=48/11	total_cov=48/31
RA	12	.	NZ_CP009273	29486	0	C	A	bias_e_value=2.0604e-08	bias_p_value=4.4487e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.2	fisher_strand_p_value=1.1808e-16	frequency=3.377e-01	ks_quality_p_value=1	major_base=C	major_cov=47/4	major_frequency=6.623e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.377e-01	polymorphism_score=37.8	prediction=polymorphism	ref_cov=47/4	total_cov=47/30
RA	13	.	NZ_CP009273	29496	0	T	A	bias_e_value=0.000149659	bias_p_value=3.23134e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.1	fisher_strand_p_value=1.13358e-12	frequency=2.933e-01	ks_quality_p_value=1	major_base=T	major_cov=45/8	major_frequency=7.067e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.933e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=45/8	total_cov=45/30
RA	14	.	NZ_CP009273	71566	0	C	T	bias_e_value=0.000149331	bias_p_value=3.22427e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.2	fisher_strand_p_value=1.13101e-12	frequency=2.143e-01	ks_quality_p_value=1	major_base=C	major_cov=3/52	major_frequency=7.857e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.143e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=3/52	total_cov=18/52
RA	15	.	NZ_CP009273	82805	0	T	G	bias_e_value=0.0007141	bias_p_value=1.54184e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.2	fisher_strand_p_value=5.73508e-12	frequency=2.889e-01	ks_quality_p_value=1	major_base=T	major_cov=16/48	major_frequency=7.111e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.889e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=16/48	total_cov=42/48
RA	16	.	NZ_CP009273	107682	0	T	G	bias_e_value=2.6679e-05	bias_p_value=5.76038e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.7	fisher_strand_p_value=1.90169e-13	frequency=4.103e-01	ks_quality_p_value=1	major_base=T	major_cov=10/36	major_frequency=5.897e-01	minor_base=G	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=4.103e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=10/36	total_cov=42/36
RA	17	.	NZ_CP009273	117994	0	A	T	bias_e_value=1.36115e-05	bias_p_value=2.93892e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.4	fisher_strand_p_value=9.48452e-14	frequency=2.667e-01	ks_quality_p_value=1	major_base=A	major_cov=11/55	major_frequency=7.333e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.667e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=11/55	total_cov=35/55
RA	18	.	NZ_CP009273	123696	0	T	G	bias_e_value=0.145469	bias_p_value=3.14088e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.4	fisher_strand_p_value=1.47206e-09	frequency=2.717e-01	ks_quality_p_value=1	major_base=T	major_cov=23/44	major_frequency=7.283e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.717e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=23/44	total_cov=50/44
RA	19	.	NZ_CP009273	209828	0	A	G	bias_e_value=0.000615261	bias_p_value=1.32844e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.9	fisher_strand_p_value=4.91301e-12	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=5/43	major_frequency=7.273e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.727e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=5/43	total_cov=23/43
RA	20	.	NZ_CP009273	262060	0	C	A	bias_e_value=8.27966e-05	bias_p_value=1.7877e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=341.5	fisher_strand_p_value=6.1393e-13	frequency=2.018e-01	ks_quality_p_value=1	major_base=C	major_cov=19/72	major_frequency=7.982e-01	minor_base=A	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.018e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=19/72	total_cov=42/72
RA	21	.	NZ_CP009273	262069	0	T	G	bias_e_value=7.01657e-10	bias_p_value=1.51498e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.2	fisher_strand_p_value=3.68222e-18	frequency=2.435e-01	ks_quality_p_value=1	major_base=T	major_cov=11/76	major_frequency=7.565e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.435e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=11/76	total_cov=40/76
RA	22	.	NZ_CP009273	303532	0	G	T	bias_e_value=0.000418963	bias_p_value=9.04601e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.4	fisher_strand_p_value=3.29689e-12	frequency=2.353e-01	ks_quality_p_value=1	major_base=G	major_cov=4/48	major_frequency=7.647e-01	minor_base=T	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.353e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=4/48	total_cov=21/48
RA	23	.	NZ_CP009273	319079	0	T	G	bias_e_value=0.00244127	bias_p_value=5.27105e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.1	fisher_strand_p_value=2.05848e-11	frequency=3.093e-01	ks_quality_p_value=1	major_base=T	major_cov=21/46	major_frequency=6.907e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.093e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=21/46	total_cov=51/46
RA	24	.	NZ_CP009273	319085	0	C	T	bias_e_value=0.546716	bias_p_value=1.18044e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.1	fisher_strand_p_value=5.96284e-09	frequency=2.581e-01	ks_quality_p_value=0.992548	major_base=C	major_cov=25/44	major_frequency=7.419e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.581e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=25/44	total_cov=50/44
RA	25	.	NZ_CP009273	328702	0	G	T	bias_e_value=1.27101	bias_p_value=2.74429e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.1	fisher_strand_p_value=1.44012e-08	frequency=2.073e-01	ks_quality_p_value=1	major_base=G	major_cov=17/48	major_frequency=7.927e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.073e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=17/48	total_cov=34/48
RA	26	.	NZ_CP009273	328711	0	A	G	bias_e_value=1.06567e-06	bias_p_value=2.30093e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.9	fisher_strand_p_value=6.84489e-15	frequency=3.293e-01	ks_quality_p_value=1	major_base=A	major_cov=8/47	major_frequency=6.707e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.293e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=8/47	total_cov=35/47
RA	27	.	NZ_CP009273	333780	0	A	G	bias_e_value=0.000782704	bias_p_value=1.68997e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.2	fisher_strand_p_value=6.30841e-12	frequency=3.088e-01	ks_quality_p_value=1	major_base=A	major_cov=7/40	major_frequency=6.912e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=3.088e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=7/40	total_cov=29/40
RA	28	.	NZ_CP009273	341013	0	C	A	bias_e_value=8.5628e-06	bias_p_value=1.84883e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.5	fisher_strand_p_value=5.87577e-14	frequency=2.424e-01	ks_quality_p_value=1	major_base=C	major_cov=62/13	major_frequency=7.576e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.424e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=62/13	total_cov=62/37
RA	29	.	NZ_CP009273	341015	0	G	A	bias_e_value=7.06097e-11	bias_p_value=1.52456e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.4	fisher_strand_p_value=3.50516e-19	frequency=3.000e-01	ks_quality_p_value=1	major_base=G	major_cov=63/7	major_frequency=7.000e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.000e-01	polymorphism_score=31.8	prediction=polymorphism	ref_cov=63/7	total_cov=63/37
RA	30	.	NZ_CP009273	341039	0	C	A	bias_e_value=9.47637e-12	bias_p_value=2.04608e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.0	fisher_strand_p_value=4.49201e-20	frequency=2.830e-01	ks_quality_p_value=1	major_base=C	major_cov=69/7	major_frequency=7.170e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.830e-01	polymorphism_score=28.0	prediction=polymorphism	ref_cov=69/7	total_cov=69/37
RA	31	.	NZ_CP009273	346265	0	G	A	bias_e_value=0.0107747	bias_p_value=2.32641e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.0	fisher_strand_p_value=9.73984e-11	frequency=2.250e-01	ks_quality_p_value=0.992768	major_base=G	major_cov=11/51	major_frequency=7.750e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.250e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=11/51	total_cov=30/51
RA	32	.	NZ_CP009273	357419	0	A	T	bias_e_value=0.386339	bias_p_value=8.34161e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=260.6	fisher_strand_p_value=4.10703e-09	frequency=2.020e-01	ks_quality_p_value=1	major_base=A	major_cov=24/55	major_frequency=7.980e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.020e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=24/55	total_cov=44/55
RA	33	.	NZ_CP009273	357439	0	C	T	bias_e_value=0.074302	bias_p_value=1.60429e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.3	fisher_strand_p_value=7.27867e-10	frequency=2.258e-01	ks_quality_p_value=1	major_base=C	major_cov=20/52	major_frequency=7.742e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.258e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=20/52	total_cov=41/52
RA	34	.	NZ_CP009273	381238	0	A	G	bias_e_value=0.107402	bias_p_value=2.31896e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.8	fisher_strand_p_value=1.07088e-09	frequency=2.429e-01	ks_quality_p_value=1	major_base=A	major_cov=10/43	major_frequency=7.571e-01	minor_base=G	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.429e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=10/43	total_cov=28/43
RA	35	.	NZ_CP009273	383643	0	T	G	bias_e_value=0.00777438	bias_p_value=1.6786e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.1	fisher_strand_p_value=6.87954e-11	frequency=4.545e-01	ks_quality_p_value=1	major_base=T	major_cov=14/28	major_frequency=5.455e-01	minor_base=G	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=4.545e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=14/28	total_cov=51/28
RA	36	.	NZ_CP009273	407497	0	T	C	bias_e_value=3.42191e-06	bias_p_value=7.38838e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.4	fisher_strand_p_value=2.2795e-14	frequency=3.333e-01	ks_quality_p_value=1	major_base=T	major_cov=47/11	major_frequency=6.667e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.333e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=47/11	total_cov=47/40
RA	37	.	NZ_CP009273	429849	0	A	T	bias_e_value=0.00131828	bias_p_value=2.84635e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.6	fisher_strand_p_value=1.08443e-11	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=12/51	major_frequency=7.500e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.500e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=12/51	total_cov=33/51
RA	38	.	NZ_CP009273	490006	0	G	C	bias_e_value=0.000251029	bias_p_value=5.42007e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.2	fisher_strand_p_value=1.93786e-12	frequency=2.045e-01	ks_quality_p_value=1	major_base=G	major_cov=9/61	major_frequency=7.955e-01	minor_base=C	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.045e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=9/61	total_cov=27/61
RA	39	.	NZ_CP009273	499223	0	T	A	bias_e_value=1.26025	bias_p_value=2.72107e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.7	fisher_strand_p_value=1.42726e-08	frequency=2.432e-01	ks_quality_p_value=1	major_base=T	major_cov=41/15	major_frequency=7.568e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.432e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=41/15	total_cov=41/33
RA	40	.	NZ_CP009273	499279	0	G	C	bias_e_value=0.280745	bias_p_value=6.06167e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.3	fisher_strand_p_value=2.93597e-09	frequency=2.329e-01	ks_quality_p_value=1	major_base=G	major_cov=44/12	major_frequency=7.671e-01	minor_base=C	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.329e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=44/12	total_cov=44/29
RA	41	.	NZ_CP009273	499290	0	T	C	bias_e_value=0.00667178	bias_p_value=1.44053e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.9	fisher_strand_p_value=5.86552e-11	frequency=2.639e-01	ks_quality_p_value=1	major_base=T	major_cov=44/9	major_frequency=7.361e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.639e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=44/9	total_cov=44/29
RA	42	.	NZ_CP009273	500096	0	C	T	bias_e_value=0.217309	bias_p_value=4.692e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.6	fisher_strand_p_value=2.26149e-09	frequency=2.297e-01	ks_quality_p_value=0.991972	major_base=C	major_cov=45/12	major_frequency=7.703e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.297e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=45/12	total_cov=45/29
RA	43	.	NZ_CP009273	500858	0	G	A	bias_e_value=0.569331	bias_p_value=1.22927e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.4	fisher_strand_p_value=6.17644e-09	frequency=2.817e-01	ks_quality_p_value=1	major_base=G	major_cov=37/14	major_frequency=7.183e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.817e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=37/14	total_cov=37/34
RA	44	.	NZ_CP009273	500896	0	C	A	bias_e_value=7.07339e-06	bias_p_value=1.52725e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.5	fisher_strand_p_value=4.82349e-14	frequency=3.472e-01	ks_quality_p_value=1	major_base=C	major_cov=41/6	major_frequency=6.528e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=3.472e-01	polymorphism_score=31.8	prediction=polymorphism	ref_cov=41/6	total_cov=41/31
RA	45	.	NZ_CP009273	531374	0	A	G	bias_e_value=3.74787e-07	bias_p_value=8.09219e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.3	fisher_strand_p_value=2.3326e-15	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=7/47	major_frequency=6.667e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.333e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=7/47	total_cov=34/47
RA	46	.	NZ_CP009273	542217	0	G	A	bias_e_value=9.01176e-09	bias_p_value=1.94577e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=304.7	fisher_strand_p_value=5.05074e-17	frequency=2.273e-01	ks_quality_p_value=1	major_base=G	major_cov=75/10	major_frequency=7.727e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.273e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=75/10	total_cov=75/35
RA	47	.	NZ_CP009273	554637	0	G	A	bias_e_value=120.063	bias_p_value=2.59233e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.3	fisher_strand_p_value=1.8237e-06	frequency=2.644e-01	ks_quality_p_value=1	major_base=G	major_cov=38/26	major_frequency=7.356e-01	minor_base=A	minor_cov=1/22	new_cov=1/22	polymorphism_frequency=2.644e-01	polymorphism_score=21.8	prediction=polymorphism	ref_cov=38/26	total_cov=39/48
RA	48	.	NZ_CP009273	595032	0	T	G	bias_e_value=5.21021e-11	bias_p_value=1.12496e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.1	fisher_strand_p_value=2.56805e-19	frequency=3.194e-01	ks_quality_p_value=1	major_base=T	major_cov=0/49	major_frequency=6.806e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.194e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=0/49	total_cov=23/49
RA	49	.	NZ_CP009273	629771	0	A	G	bias_e_value=1.6165e-08	bias_p_value=3.49025e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.8	fisher_strand_p_value=9.20317e-17	frequency=2.593e-01	ks_quality_p_value=1	major_base=A	major_cov=12/68	major_frequency=7.407e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.593e-01	polymorphism_score=25.3	prediction=polymorphism	ref_cov=12/68	total_cov=40/68
RA	50	.	NZ_CP009273	629775	0	T	G	bias_e_value=0.000160042	bias_p_value=3.45554e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=314.8	fisher_strand_p_value=1.2152e-12	frequency=2.072e-01	ks_quality_p_value=1	major_base=T	major_cov=19/69	major_frequency=7.928e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.072e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=19/69	total_cov=42/69
RA	51	.	NZ_CP009273	630522	0	C	A	bias_e_value=52.0615	bias_p_value=1.12408e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.0	fisher_strand_p_value=7.43863e-07	frequency=2.143e-01	ks_quality_p_value=1	major_base=C	major_cov=24/42	major_frequency=7.857e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.143e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=24/42	total_cov=42/42
RA	52	.	NZ_CP009273	630548	0	A	T	bias_e_value=0.0684025	bias_p_value=1.47691e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.6	fisher_strand_p_value=6.67451e-10	frequency=2.558e-01	ks_quality_p_value=1	major_base=A	major_cov=18/46	major_frequency=7.442e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.558e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=18/46	total_cov=40/46
RA	53	.	NZ_CP009273	630604	0	G	T	bias_e_value=606.653	bias_p_value=0.000130985	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.1	fisher_strand_p_value=1.05097e-05	frequency=2.247e-01	ks_quality_p_value=1	major_base=G	major_cov=33/36	major_frequency=7.753e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.247e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=33/36	total_cov=53/36
RA	54	.	NZ_CP009273	630619	0	C	T	bias_e_value=19.875	bias_p_value=4.2913e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.2	fisher_strand_p_value=2.65876e-07	frequency=2.609e-01	ks_quality_p_value=1	major_base=C	major_cov=30/38	major_frequency=7.391e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.609e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=30/38	total_cov=54/38
RA	55	.	NZ_CP009273	642221	0	G	T	bias_e_value=0.0185094	bias_p_value=3.99644e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.6	fisher_strand_p_value=1.701e-10	frequency=2.639e-01	ks_quality_p_value=1	major_base=G	major_cov=10/43	major_frequency=7.361e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.639e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=10/43	total_cov=30/43
RA	56	.	NZ_CP009273	642233	0	G	T	bias_e_value=0.00084151	bias_p_value=1.81694e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.2	fisher_strand_p_value=6.80148e-12	frequency=2.800e-01	ks_quality_p_value=1	major_base=G	major_cov=9/45	major_frequency=7.200e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.800e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=9/45	total_cov=30/45
RA	57	.	NZ_CP009273	646723	0	A	T	bias_e_value=18.3331	bias_p_value=3.95839e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.9	fisher_strand_p_value=2.43949e-07	frequency=2.083e-01	ks_quality_p_value=1	major_base=A	major_cov=30/46	major_frequency=7.917e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.083e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=30/46	total_cov=50/46
RA	58	.	NZ_CP009273	653132	0	A	C	bias_e_value=0.00019631	bias_p_value=4.23861e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.2	fisher_strand_p_value=1.50176e-12	frequency=2.680e-01	ks_quality_p_value=1	major_base=A	major_cov=54/17	major_frequency=7.320e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.680e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=54/17	total_cov=54/43
RA	59	.	NZ_CP009273	687319	0	T	A	bias_e_value=11.1254	bias_p_value=2.40214e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.8	fisher_strand_p_value=1.44507e-07	frequency=2.043e-01	ks_quality_p_value=0.991941	major_base=T	major_cov=27/47	major_frequency=7.957e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.043e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=27/47	total_cov=47/47
RA	60	.	NZ_CP009273	721800	0	G	A	bias_e_value=5.93374	bias_p_value=1.28118e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.2	fisher_strand_p_value=7.35225e-08	frequency=2.222e-01	ks_quality_p_value=1	major_base=G	major_cov=20/43	major_frequency=7.778e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.222e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=20/43	total_cov=39/43
RA	61	.	NZ_CP009273	748515	0	C	T	bias_e_value=0.0327947	bias_p_value=7.08084e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.3	fisher_strand_p_value=3.09249e-10	frequency=2.432e-01	ks_quality_p_value=1	major_base=C	major_cov=59/25	major_frequency=7.568e-01	minor_base=T	minor_cov=1/26	new_cov=1/26	polymorphism_frequency=2.432e-01	polymorphism_score=24.6	prediction=polymorphism	ref_cov=59/25	total_cov=60/51
RA	62	.	NZ_CP009273	748561	0	A	T	bias_e_value=0.00713157	bias_p_value=1.53981e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=288.9	fisher_strand_p_value=6.28753e-11	frequency=2.241e-01	ks_quality_p_value=1	major_base=A	major_cov=61/29	major_frequency=7.759e-01	minor_base=T	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.241e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=61/29	total_cov=61/55
RA	63	.	NZ_CP009273	748570	0	G	T	bias_e_value=0.180644	bias_p_value=3.90036e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=308.6	fisher_strand_p_value=1.8477e-09	frequency=2.342e-01	ks_quality_p_value=1	major_base=G	major_cov=58/27	major_frequency=7.658e-01	minor_base=T	minor_cov=1/25	new_cov=1/25	polymorphism_frequency=2.342e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=58/27	total_cov=59/52
RA	64	.	NZ_CP009273	748581	0	T	A	bias_e_value=1.2551e-10	bias_p_value=2.70995e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.3	fisher_strand_p_value=6.31601e-19	frequency=3.423e-01	ks_quality_p_value=1	major_base=T	major_cov=60/13	major_frequency=6.577e-01	minor_base=A	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=3.423e-01	polymorphism_score=40.2	prediction=polymorphism	ref_cov=60/13	total_cov=60/51
RA	65	.	NZ_CP009273	753987	0	C	A	bias_e_value=3.37551	bias_p_value=7.2882e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.1	fisher_strand_p_value=4.04372e-08	frequency=2.414e-01	ks_quality_p_value=1	major_base=C	major_cov=43/23	major_frequency=7.586e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.414e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=43/23	total_cov=44/44
RA	66	.	NZ_CP009273	754008	0	T	A	bias_e_value=0.0739451	bias_p_value=1.59658e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.4	fisher_strand_p_value=7.24206e-10	frequency=2.660e-01	ks_quality_p_value=1	major_base=T	major_cov=47/22	major_frequency=7.340e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.660e-01	polymorphism_score=23.4	prediction=polymorphism	ref_cov=47/22	total_cov=47/47
RA	67	.	NZ_CP009273	754016	0	G	C	bias_e_value=1.43676	bias_p_value=3.10216e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.2	fisher_strand_p_value=1.63905e-08	frequency=2.041e-01	ks_quality_p_value=1	major_base=G	major_cov=52/26	major_frequency=7.959e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.041e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=52/26	total_cov=52/46
RA	68	.	NZ_CP009273	754027	0	T	A	bias_e_value=1.58771	bias_p_value=3.4281e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.7	fisher_strand_p_value=1.82141e-08	frequency=2.000e-01	ks_quality_p_value=1	major_base=T	major_cov=53/27	major_frequency=8.000e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.000e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=53/27	total_cov=54/47
RA	69	.	NZ_CP009273	782311	0	A	C	bias_e_value=1.24728e-07	bias_p_value=2.69304e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.1	fisher_strand_p_value=7.5174e-16	frequency=3.021e-01	ks_quality_p_value=1	major_base=A	major_cov=56/11	major_frequency=6.979e-01	minor_base=C	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.021e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=56/11	total_cov=56/41
RA	70	.	NZ_CP009273	792856	0	G	T	bias_e_value=1.69977e-05	bias_p_value=3.67005e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.9	fisher_strand_p_value=1.19324e-13	frequency=3.026e-01	ks_quality_p_value=1	major_base=G	major_cov=46/7	major_frequency=6.974e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.026e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=46/7	total_cov=46/30
RA	71	.	NZ_CP009273	799325	0	G	T	bias_e_value=0.000186267	bias_p_value=4.02177e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.3	fisher_strand_p_value=1.42219e-12	frequency=2.857e-01	ks_quality_p_value=1	major_base=G	major_cov=6/44	major_frequency=7.143e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.857e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=6/44	total_cov=26/44
RA	72	.	NZ_CP009273	822963	0	T	G	bias_e_value=4.64852e-06	bias_p_value=1.00368e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.2	fisher_strand_p_value=3.12712e-14	frequency=2.800e-01	ks_quality_p_value=1	major_base=T	major_cov=5/49	major_frequency=7.200e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.800e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=5/49	total_cov=26/49
RA	73	.	NZ_CP009273	858015	0	G	T	bias_e_value=0.00024887	bias_p_value=5.37346e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.2	fisher_strand_p_value=1.92057e-12	frequency=2.658e-01	ks_quality_p_value=1	major_base=G	major_cov=9/49	major_frequency=7.342e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.658e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=9/49	total_cov=30/49
RA	74	.	NZ_CP009273	874860	0	G	A	consensus_score=366.1	frequency=1	major_base=A	major_cov=51/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/40
RA	75	.	NZ_CP009273	937169	0	T	G	bias_e_value=1.41698e-09	bias_p_value=3.05946e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.1	fisher_strand_p_value=7.56871e-18	frequency=2.763e-01	ks_quality_p_value=1	major_base=T	major_cov=1/54	major_frequency=7.237e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.763e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=1/54	total_cov=22/54
RA	76	.	NZ_CP009273	949844	0	C	T	bias_e_value=5.85117e-08	bias_p_value=1.26335e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.3	fisher_strand_p_value=3.45918e-15	frequency=2.991e-01	ks_quality_p_value=0.099779	major_base=C	major_cov=58/17	major_frequency=7.009e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.991e-01	polymorphism_score=29.8	prediction=polymorphism	ref_cov=58/17	total_cov=60/50
RA	77	.	NZ_CP009273	1009465	0	G	T	bias_e_value=0.000275542	bias_p_value=5.94935e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=291.2	fisher_strand_p_value=2.13447e-12	frequency=2.255e-01	ks_quality_p_value=1	major_base=G	major_cov=17/62	major_frequency=7.745e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.255e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=17/62	total_cov=40/62
RA	78	.	NZ_CP009273	1009475	0	A	G	bias_e_value=0.000113798	bias_p_value=2.45707e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.1	fisher_strand_p_value=8.53461e-13	frequency=2.245e-01	ks_quality_p_value=1	major_base=A	major_cov=14/62	major_frequency=7.755e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.245e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=14/62	total_cov=37/62
RA	79	.	NZ_CP009273	1009484	0	A	G	bias_e_value=5.84337e-05	bias_p_value=1.26167e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.5	fisher_strand_p_value=4.27978e-13	frequency=2.268e-01	ks_quality_p_value=1	major_base=A	major_cov=13/62	major_frequency=7.732e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.268e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=13/62	total_cov=38/62
RA	80	.	NZ_CP009273	1010972	0	G	T	bias_e_value=0.000789203	bias_p_value=1.704e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=281.0	fisher_strand_p_value=6.36283e-12	frequency=2.193e-01	ks_quality_p_value=1	major_base=G	major_cov=24/65	major_frequency=7.807e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.193e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=24/65	total_cov=49/65
RA	81	.	NZ_CP009273	1032362	0	T	A	bias_e_value=6.66255	bias_p_value=1.43854e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.4	fisher_strand_p_value=8.31393e-08	frequency=2.308e-01	ks_quality_p_value=1	major_base=T	major_cov=41/19	major_frequency=7.692e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.308e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=41/19	total_cov=41/38
RA	82	.	NZ_CP009273	1032383	0	T	A	bias_e_value=2.70632	bias_p_value=5.84333e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.6	fisher_strand_p_value=3.20053e-08	frequency=2.329e-01	ks_quality_p_value=1	major_base=T	major_cov=41/15	major_frequency=7.671e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.329e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=41/15	total_cov=41/33
RA	83	.	NZ_CP009273	1076297	0	G	T	bias_e_value=0.00492194	bias_p_value=1.06272e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.4	fisher_strand_p_value=4.272e-11	frequency=2.262e-01	ks_quality_p_value=1	major_base=G	major_cov=12/53	major_frequency=7.738e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.262e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=12/53	total_cov=31/53
RA	84	.	NZ_CP009273	1116894	0	G	A	bias_e_value=64.8888	bias_p_value=1.40104e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.0	fisher_strand_p_value=9.4185e-07	frequency=2.078e-01	ks_quality_p_value=1	major_base=G	major_cov=21/40	major_frequency=7.922e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.078e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=21/40	total_cov=38/40
RA	85	.	NZ_CP009273	1116920	0	C	T	bias_e_value=0.0624765	bias_p_value=1.34896e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.9	fisher_strand_p_value=6.14411e-10	frequency=3.205e-01	ks_quality_p_value=0.987978	major_base=C	major_cov=16/37	major_frequency=6.795e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=3.205e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=16/37	total_cov=42/37
RA	86	.	NZ_CP009273	1125830	0	C	T	bias_e_value=0.215865	bias_p_value=4.66083e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.5	fisher_strand_p_value=2.33945e-09	frequency=2.121e-01	ks_quality_p_value=0.952228	major_base=C	major_cov=54/24	major_frequency=7.879e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.121e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=54/24	total_cov=54/45
RA	87	.	NZ_CP009273	1152745	0	A	G	bias_e_value=2.1373e-07	bias_p_value=4.61473e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.9	fisher_strand_p_value=1.3084e-15	frequency=3.187e-01	ks_quality_p_value=1	major_base=A	major_cov=10/52	major_frequency=6.813e-01	minor_base=G	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.187e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=10/52	total_cov=39/52
RA	88	.	NZ_CP009273	1152762	0	C	T	bias_e_value=1.59595e-06	bias_p_value=3.44588e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.6	fisher_strand_p_value=1.03795e-14	frequency=3.068e-01	ks_quality_p_value=1	major_base=C	major_cov=10/51	major_frequency=6.932e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.068e-01	polymorphism_score=20.5	prediction=polymorphism	ref_cov=10/51	total_cov=38/51
RA	89	.	NZ_CP009273	1155293	0	A	G	bias_e_value=4.4812e-08	bias_p_value=9.67555e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.1	fisher_strand_p_value=2.62375e-16	frequency=3.191e-01	ks_quality_p_value=1	major_base=A	major_cov=10/54	major_frequency=6.809e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.191e-01	polymorphism_score=27.1	prediction=polymorphism	ref_cov=10/54	total_cov=40/54
RA	90	.	NZ_CP009273	1170061	0	T	C	bias_e_value=7.88249e-05	bias_p_value=1.70194e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.9	fisher_strand_p_value=5.8346e-13	frequency=2.766e-01	ks_quality_p_value=1	major_base=T	major_cov=53/15	major_frequency=7.234e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.766e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=53/15	total_cov=53/41
RA	91	.	NZ_CP009273	1202802	0	T	G	bias_e_value=0.883976	bias_p_value=1.90863e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.0	fisher_strand_p_value=9.81856e-09	frequency=2.353e-01	ks_quality_p_value=1	major_base=T	major_cov=20/45	major_frequency=7.647e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.353e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=20/45	total_cov=40/46
RA	92	.	NZ_CP009273	1218052	0	G	A	bias_e_value=7.83563e-06	bias_p_value=1.69182e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.2	fisher_strand_p_value=5.36117e-14	frequency=2.262e-01	ks_quality_p_value=1	major_base=G	major_cov=59/6	major_frequency=7.738e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.262e-01	polymorphism_score=22.7	prediction=polymorphism	ref_cov=59/6	total_cov=59/26
RA	93	.	NZ_CP009273	1219463	0	C	A	bias_e_value=0.0137349	bias_p_value=2.96556e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.2	fisher_strand_p_value=1.24571e-10	frequency=2.658e-01	ks_quality_p_value=1	major_base=C	major_cov=13/45	major_frequency=7.342e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.658e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=13/45	total_cov=34/45
RA	94	.	NZ_CP009273	1219496	0	T	A	bias_e_value=1.49245	bias_p_value=3.22241e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.1	fisher_strand_p_value=1.94956e-08	frequency=2.500e-01	ks_quality_p_value=0.875173	major_base=T	major_cov=19/41	major_frequency=7.500e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.500e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=19/41	total_cov=39/41
RA	95	.	NZ_CP009273	1219504	0	T	G	bias_e_value=0.0243444	bias_p_value=5.25631e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.0	fisher_strand_p_value=2.26484e-10	frequency=2.875e-01	ks_quality_p_value=1	major_base=T	major_cov=15/42	major_frequency=7.125e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.875e-01	polymorphism_score=18.5	prediction=polymorphism	ref_cov=15/42	total_cov=38/42
RA	96	.	NZ_CP009273	1229689	0	T	A	bias_e_value=4.53524e-05	bias_p_value=9.79222e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.3	fisher_strand_p_value=3.29239e-13	frequency=2.471e-01	ks_quality_p_value=1	major_base=T	major_cov=55/9	major_frequency=7.529e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.471e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=55/9	total_cov=55/30
RA	97	.	NZ_CP009273	1236823	0	G	A	bias_e_value=10.4035	bias_p_value=2.24627e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=231.6	fisher_strand_p_value=1.33473e-07	frequency=2.255e-01	ks_quality_p_value=1	major_base=G	major_cov=45/34	major_frequency=7.745e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.255e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=45/34	total_cov=45/57
RA	98	.	NZ_CP009273	1240690	0	G	T	bias_e_value=0.00168422	bias_p_value=3.63646e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.4	fisher_strand_p_value=1.39904e-11	frequency=3.053e-01	ks_quality_p_value=1	major_base=G	major_cov=20/46	major_frequency=6.947e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.053e-01	polymorphism_score=29.6	prediction=polymorphism	ref_cov=20/46	total_cov=49/46
RA	99	.	NZ_CP009273	1240703	0	G	T	bias_e_value=0.00653125	bias_p_value=1.41019e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.1	fisher_strand_p_value=5.73679e-11	frequency=3.053e-01	ks_quality_p_value=1	major_base=G	major_cov=21/45	major_frequency=6.947e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.053e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=21/45	total_cov=50/45
RA	100	.	NZ_CP009273	1267283	0	A	T	bias_e_value=4.52697e-07	bias_p_value=9.77437e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.2	fisher_strand_p_value=2.83337e-15	frequency=3.258e-01	ks_quality_p_value=1	major_base=A	major_cov=10/50	major_frequency=6.742e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.258e-01	polymorphism_score=34.4	prediction=polymorphism	ref_cov=10/50	total_cov=39/50
RA	101	.	NZ_CP009273	1267301	0	G	T	bias_e_value=1.9115e-08	bias_p_value=4.12719e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.0	fisher_strand_p_value=1.09323e-16	frequency=3.085e-01	ks_quality_p_value=1	major_base=G	major_cov=9/56	major_frequency=6.915e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.085e-01	polymorphism_score=22.2	prediction=polymorphism	ref_cov=9/56	total_cov=39/56
RA	102	.	NZ_CP009273	1267315	0	C	T	bias_e_value=0.00292161	bias_p_value=6.30817e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.8	fisher_strand_p_value=2.48162e-11	frequency=2.316e-01	ks_quality_p_value=1	major_base=C	major_cov=17/56	major_frequency=7.684e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.316e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=17/56	total_cov=39/56
RA	103	.	NZ_CP009273	1267321	0	G	T	bias_e_value=0.000127889	bias_p_value=2.76132e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.3	fisher_strand_p_value=9.63187e-13	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=15/57	major_frequency=7.500e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.500e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=15/57	total_cov=40/57
RA	104	.	NZ_CP009273	1287902	0	T	A	bias_e_value=0.0270871	bias_p_value=5.84849e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.8	fisher_strand_p_value=2.53217e-10	frequency=2.368e-01	ks_quality_p_value=1	major_base=T	major_cov=57/30	major_frequency=7.632e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.368e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=57/30	total_cov=58/57
RA	105	.	NZ_CP009273	1287911	0	C	A	bias_e_value=0.0164678	bias_p_value=3.55563e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.8	fisher_strand_p_value=1.50556e-10	frequency=2.393e-01	ks_quality_p_value=1	major_base=C	major_cov=57/32	major_frequency=7.607e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.393e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=57/32	total_cov=57/60
RA	106	.	NZ_CP009273	1287914	0	T	A	bias_e_value=0.00150212	bias_p_value=3.2433e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.4	fisher_strand_p_value=1.24209e-11	frequency=2.564e-01	ks_quality_p_value=1	major_base=T	major_cov=58/29	major_frequency=7.436e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.564e-01	polymorphism_score=25.2	prediction=polymorphism	ref_cov=58/29	total_cov=58/59
RA	107	.	NZ_CP009273	1310154	0	C	T	bias_e_value=0.0326316	bias_p_value=7.04562e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.5	fisher_strand_p_value=3.07641e-10	frequency=2.299e-01	ks_quality_p_value=1	major_base=C	major_cov=51/16	major_frequency=7.701e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.299e-01	polymorphism_score=21.8	prediction=polymorphism	ref_cov=51/16	total_cov=51/36
RA	108	.	NZ_CP009273	1310161	0	A	C	bias_e_value=0.000481353	bias_p_value=1.03931e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.3	fisher_strand_p_value=3.80784e-12	frequency=2.683e-01	ks_quality_p_value=1	major_base=A	major_cov=49/11	major_frequency=7.317e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.683e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=49/11	total_cov=49/34
RA	109	.	NZ_CP009273	1310188	0	A	T	bias_e_value=0.0142391	bias_p_value=3.07443e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=228.8	fisher_strand_p_value=1.29349e-10	frequency=2.386e-01	ks_quality_p_value=1	major_base=A	major_cov=51/16	major_frequency=7.614e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.386e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=51/16	total_cov=51/37
RA	110	.	NZ_CP009273	1310193	0	T	A	bias_e_value=0.0107905	bias_p_value=2.32982e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.5	fisher_strand_p_value=9.68422e-11	frequency=2.442e-01	ks_quality_p_value=1	major_base=T	major_cov=50/15	major_frequency=7.558e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.442e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=50/15	total_cov=50/36
RA	111	.	NZ_CP009273	1316675	0	G	A	bias_e_value=0.00628615	bias_p_value=1.35727e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.7	fisher_strand_p_value=5.51255e-11	frequency=2.558e-01	ks_quality_p_value=1	major_base=G	major_cov=49/15	major_frequency=7.442e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.558e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=49/15	total_cov=49/37
RA	112	.	NZ_CP009273	1316677	0	T	A	bias_e_value=0.000133726	bias_p_value=2.88734e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.6	fisher_strand_p_value=1.00877e-12	frequency=2.791e-01	ks_quality_p_value=1	major_base=T	major_cov=50/12	major_frequency=7.209e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.791e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=50/12	total_cov=50/36
RA	113	.	NZ_CP009273	1322728	0	A	T	bias_e_value=0.000434985	bias_p_value=9.39194e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.7	fisher_strand_p_value=3.42783e-12	frequency=2.688e-01	ks_quality_p_value=1	major_base=A	major_cov=16/52	major_frequency=7.312e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.688e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=16/52	total_cov=41/52
RA	114	.	NZ_CP009273	1322740	0	A	G	bias_e_value=0.155958	bias_p_value=3.36735e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=242.6	fisher_strand_p_value=1.58363e-09	frequency=2.143e-01	ks_quality_p_value=1	major_base=A	major_cov=23/54	major_frequency=7.857e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.143e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=23/54	total_cov=45/54
RA	115	.	NZ_CP009273	1329962	0	G	T	bias_e_value=0.00481037	bias_p_value=1.03863e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.6	fisher_strand_p_value=4.17116e-11	frequency=2.404e-01	ks_quality_p_value=1	major_base=G	major_cov=23/56	major_frequency=7.596e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.404e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=23/56	total_cov=49/56
RA	116	.	NZ_CP009273	1355096	0	T	A	bias_e_value=6.02011e-05	bias_p_value=1.29983e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.0	fisher_strand_p_value=4.41385e-13	frequency=2.361e-01	ks_quality_p_value=1	major_base=T	major_cov=51/4	major_frequency=7.639e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.361e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=51/4	total_cov=51/21
RA	117	.	NZ_CP009273	1377967	0	C	A	bias_e_value=2.29868	bias_p_value=4.96317e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.1	fisher_strand_p_value=2.69298e-08	frequency=2.360e-01	ks_quality_p_value=1	major_base=C	major_cov=49/19	major_frequency=7.640e-01	minor_base=A	minor_cov=1/20	new_cov=1/20	polymorphism_frequency=2.360e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=49/19	total_cov=50/40
RA	118	.	NZ_CP009273	1377979	0	G	A	bias_e_value=6.94885e-05	bias_p_value=1.50036e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.1	fisher_strand_p_value=5.12061e-13	frequency=3.000e-01	ks_quality_p_value=1	major_base=G	major_cov=49/14	major_frequency=7.000e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.000e-01	polymorphism_score=23.2	prediction=polymorphism	ref_cov=49/14	total_cov=49/41
RA	119	.	NZ_CP009273	1385342	0	A	T	bias_e_value=131.849	bias_p_value=2.84681e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.6	fisher_strand_p_value=2.01703e-06	frequency=2.111e-01	ks_quality_p_value=1	major_base=A	major_cov=47/24	major_frequency=7.889e-01	minor_base=T	minor_cov=1/18	new_cov=1/18	polymorphism_frequency=2.111e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=47/24	total_cov=48/42
RA	120	.	NZ_CP009273	1407992	0	A	T	bias_e_value=4.54071e-10	bias_p_value=9.80404e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.3	fisher_strand_p_value=2.35736e-18	frequency=2.791e-01	ks_quality_p_value=1	major_base=A	major_cov=3/59	major_frequency=7.209e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.791e-01	polymorphism_score=28.7	prediction=polymorphism	ref_cov=3/59	total_cov=27/59
RA	121	.	NZ_CP009273	1408018	0	C	T	bias_e_value=0.0115663	bias_p_value=2.49733e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.5	fisher_strand_p_value=1.04118e-10	frequency=2.174e-01	ks_quality_p_value=1	major_base=C	major_cov=12/60	major_frequency=7.826e-01	minor_base=T	minor_cov=19/1	new_cov=19/1	polymorphism_frequency=2.174e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=12/60	total_cov=31/61
RA	122	.	NZ_CP009273	1429924	0	C	T	bias_e_value=2.38517	bias_p_value=5.14991e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.0	fisher_strand_p_value=2.80024e-08	frequency=2.073e-01	ks_quality_p_value=1	major_base=C	major_cov=47/18	major_frequency=7.927e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.073e-01	polymorphism_score=20.1	prediction=polymorphism	ref_cov=47/18	total_cov=47/35
RA	123	.	NZ_CP009273	1429963	0	T	A	bias_e_value=0.0126187	bias_p_value=2.72456e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.6	fisher_strand_p_value=1.14024e-10	frequency=2.564e-01	ks_quality_p_value=1	major_base=T	major_cov=46/12	major_frequency=7.436e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.564e-01	polymorphism_score=19.0	prediction=polymorphism	ref_cov=46/12	total_cov=46/33
RA	124	.	NZ_CP009273	1429972	0	G	A	bias_e_value=1.06574e-07	bias_p_value=2.30107e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.3	fisher_strand_p_value=6.39437e-16	frequency=3.562e-01	ks_quality_p_value=1	major_base=G	major_cov=43/4	major_frequency=6.438e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=3.562e-01	polymorphism_score=22.9	prediction=polymorphism	ref_cov=43/4	total_cov=43/30
RA	125	.	NZ_CP009273	1429975	0	G	A	bias_e_value=3.43243e-05	bias_p_value=7.41111e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.3	fisher_strand_p_value=2.46788e-13	frequency=3.108e-01	ks_quality_p_value=1	major_base=G	major_cov=44/7	major_frequency=6.892e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.108e-01	polymorphism_score=23.6	prediction=polymorphism	ref_cov=44/7	total_cov=44/30
RA	126	.	NZ_CP009273	1429978	0	T	A	bias_e_value=3.43243e-05	bias_p_value=7.41111e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.5	fisher_strand_p_value=2.46788e-13	frequency=3.108e-01	ks_quality_p_value=1	major_base=T	major_cov=44/7	major_frequency=6.892e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.108e-01	polymorphism_score=25.1	prediction=polymorphism	ref_cov=44/7	total_cov=44/30
RA	127	.	NZ_CP009273	1429982	0	C	A	bias_e_value=6.29653e-05	bias_p_value=1.35951e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.3	fisher_strand_p_value=4.62381e-13	frequency=3.026e-01	ks_quality_p_value=1	major_base=C	major_cov=45/8	major_frequency=6.974e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.026e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=45/8	total_cov=45/31
RA	128	.	NZ_CP009273	1429984	0	G	A	bias_e_value=1.93208e-08	bias_p_value=4.17163e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.5	fisher_strand_p_value=1.10533e-16	frequency=3.553e-01	ks_quality_p_value=1	major_base=G	major_cov=45/4	major_frequency=6.447e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.553e-01	polymorphism_score=38.0	prediction=polymorphism	ref_cov=45/4	total_cov=45/31
RA	129	.	NZ_CP009273	1431900	0	G	A	consensus_score=437.0	frequency=1	major_base=A	major_cov=45/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/66
RA	130	.	NZ_CP009273	1450920	0	A	G	bias_e_value=0.0163372	bias_p_value=3.52743e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=174.5	fisher_strand_p_value=1.49309e-10	frequency=2.738e-01	ks_quality_p_value=1	major_base=A	major_cov=16/45	major_frequency=7.262e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.738e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=16/45	total_cov=39/45
RA	131	.	NZ_CP009273	1472568	0	A	G	bias_e_value=0.000780924	bias_p_value=1.68612e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.9	fisher_strand_p_value=6.29351e-12	frequency=2.805e-01	ks_quality_p_value=1	major_base=A	major_cov=12/47	major_frequency=7.195e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.805e-01	polymorphism_score=18.7	prediction=polymorphism	ref_cov=12/47	total_cov=36/47
RA	132	.	NZ_CP009273	1472614	0	C	G	bias_e_value=1.14002	bias_p_value=2.46146e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.8	fisher_strand_p_value=1.28397e-08	frequency=2.381e-01	ks_quality_p_value=1	major_base=C	major_cov=20/44	major_frequency=7.619e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.381e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=20/44	total_cov=41/44
RA	133	.	NZ_CP009273	1472631	0	C	T	bias_e_value=3.68808	bias_p_value=7.96309e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.0	fisher_strand_p_value=4.44127e-08	frequency=2.333e-01	ks_quality_p_value=1	major_base=C	major_cov=24/45	major_frequency=7.667e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.333e-01	polymorphism_score=25.6	prediction=polymorphism	ref_cov=24/45	total_cov=45/45
RA	134	.	NZ_CP009273	1500277	0	C	A	bias_e_value=0.000722183	bias_p_value=1.5593e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.5	fisher_strand_p_value=5.80252e-12	frequency=2.571e-01	ks_quality_p_value=1	major_base=C	major_cov=46/6	major_frequency=7.429e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.571e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=46/6	total_cov=46/24
RA	135	.	NZ_CP009273	1500281	0	T	A	bias_e_value=0.000961415	bias_p_value=2.07583e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.9	fisher_strand_p_value=7.81108e-12	frequency=2.609e-01	ks_quality_p_value=1	major_base=T	major_cov=45/6	major_frequency=7.391e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.609e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=45/6	total_cov=45/24
RA	136	.	NZ_CP009273	1547272	0	T	C	bias_e_value=0.650065	bias_p_value=1.40358e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.8	fisher_strand_p_value=7.10212e-09	frequency=2.644e-01	ks_quality_p_value=1	major_base=T	major_cov=42/22	major_frequency=7.356e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.644e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=42/22	total_cov=42/45
RA	137	.	NZ_CP009273	1560495	0	C	T	bias_e_value=3.08438e-06	bias_p_value=6.65961e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.3	fisher_strand_p_value=2.04789e-14	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=14/56	major_frequency=7.143e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.857e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=14/56	total_cov=42/56
RA	138	.	NZ_CP009273	1568308	0	G	T	bias_e_value=1.12452e-08	bias_p_value=2.428e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.5	fisher_strand_p_value=6.33992e-17	frequency=2.778e-01	ks_quality_p_value=1	major_base=G	major_cov=6/59	major_frequency=7.222e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.778e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=6/59	total_cov=31/59
RA	139	.	NZ_CP009273	1568336	0	C	A	bias_e_value=0.000113509	bias_p_value=2.45083e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=253.3	fisher_strand_p_value=8.51216e-13	frequency=2.529e-01	ks_quality_p_value=1	major_base=C	major_cov=11/54	major_frequency=7.471e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.529e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=11/54	total_cov=33/54
RA	140	.	NZ_CP009273	1570276	0	G	T	bias_e_value=7.25064e-05	bias_p_value=1.56552e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.6	fisher_strand_p_value=5.35104e-13	frequency=2.604e-01	ks_quality_p_value=1	major_base=G	major_cov=56/15	major_frequency=7.396e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.604e-01	polymorphism_score=36.8	prediction=polymorphism	ref_cov=56/15	total_cov=56/40
RA	141	.	NZ_CP009273	1570326	0	T	C	bias_e_value=5.60219e-10	bias_p_value=1.20959e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.9	fisher_strand_p_value=2.92358e-18	frequency=3.011e-01	ks_quality_p_value=1	major_base=T	major_cov=59/6	major_frequency=6.989e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.011e-01	polymorphism_score=33.1	prediction=polymorphism	ref_cov=59/6	total_cov=59/34
RA	142	.	NZ_CP009273	1570334	0	C	A	bias_e_value=7.40144e-10	bias_p_value=1.59808e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.9	fisher_strand_p_value=3.88937e-18	frequency=3.053e-01	ks_quality_p_value=1	major_base=C	major_cov=59/7	major_frequency=6.947e-01	minor_base=A	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.053e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=59/7	total_cov=59/36
RA	143	.	NZ_CP009273	1570337	0	G	A	bias_e_value=8.27868e-11	bias_p_value=1.78749e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.0	fisher_strand_p_value=4.12509e-19	frequency=3.158e-01	ks_quality_p_value=1	major_base=G	major_cov=59/6	major_frequency=6.842e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=3.158e-01	polymorphism_score=21.9	prediction=polymorphism	ref_cov=59/6	total_cov=59/36
RA	144	.	NZ_CP009273	1617073	0	G	A	bias_e_value=0.00100802	bias_p_value=2.17647e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.8	fisher_strand_p_value=8.20494e-12	frequency=2.286e-01	ks_quality_p_value=1	major_base=G	major_cov=49/5	major_frequency=7.714e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.286e-01	polymorphism_score=27.6	prediction=polymorphism	ref_cov=49/5	total_cov=49/21
RA	145	.	NZ_CP009273	1652424	0	G	T	bias_e_value=34.9615	bias_p_value=7.54869e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.4	fisher_strand_p_value=4.8584e-07	frequency=2.143e-01	ks_quality_p_value=1	major_base=G	major_cov=33/44	major_frequency=7.857e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.143e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=33/44	total_cov=55/44
RA	146	.	NZ_CP009273	1695560	0	T	C	bias_e_value=0.00450812	bias_p_value=9.73366e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.4	fisher_strand_p_value=3.89848e-11	frequency=2.159e-01	ks_quality_p_value=1	major_base=T	major_cov=56/13	major_frequency=7.841e-01	minor_base=C	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.159e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=56/13	total_cov=56/32
RA	147	.	NZ_CP009273	1750119	0	C	A	bias_e_value=0.00104271	bias_p_value=2.25136e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.3	fisher_strand_p_value=8.49854e-12	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=50/10	major_frequency=7.500e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.500e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=50/10	total_cov=50/30
RA	148	.	NZ_CP009273	1750128	0	T	A	bias_e_value=2.24305e-05	bias_p_value=4.84306e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.6	fisher_strand_p_value=1.58944e-13	frequency=2.658e-01	ks_quality_p_value=1	major_base=T	major_cov=51/7	major_frequency=7.342e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.658e-01	polymorphism_score=30.1	prediction=polymorphism	ref_cov=51/7	total_cov=51/29
RA	149	.	NZ_CP009273	1759008	0	C	T	bias_e_value=0.00231721	bias_p_value=5.0032e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.1	fisher_strand_p_value=1.95187e-11	frequency=2.202e-01	ks_quality_p_value=0.998912	major_base=C	major_cov=62/23	major_frequency=7.798e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.202e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=62/23	total_cov=62/47
RA	150	.	NZ_CP009273	1759028	0	T	A	bias_e_value=1.64549e-05	bias_p_value=3.55284e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=246.7	fisher_strand_p_value=1.15388e-13	frequency=2.667e-01	ks_quality_p_value=1	major_base=T	major_cov=59/18	major_frequency=7.333e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.667e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=59/18	total_cov=59/46
RA	151	.	NZ_CP009273	1759031	0	G	A	bias_e_value=3.14173e-08	bias_p_value=6.78345e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.9	fisher_strand_p_value=1.82147e-16	frequency=3.019e-01	ks_quality_p_value=1	major_base=G	major_cov=60/14	major_frequency=6.981e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.019e-01	polymorphism_score=21.5	prediction=polymorphism	ref_cov=60/14	total_cov=60/46
RA	152	.	NZ_CP009273	1759040	0	C	A	bias_e_value=0.000340974	bias_p_value=7.36212e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.8	fisher_strand_p_value=2.66244e-12	frequency=2.286e-01	ks_quality_p_value=1	major_base=C	major_cov=62/19	major_frequency=7.714e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.286e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=62/19	total_cov=62/44
RA	153	.	NZ_CP009273	1759042	0	T	A	bias_e_value=1.42977e-06	bias_p_value=3.08708e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.9	fisher_strand_p_value=9.26708e-15	frequency=2.617e-01	ks_quality_p_value=1	major_base=T	major_cov=63/16	major_frequency=7.383e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.617e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=63/16	total_cov=63/44
RA	154	.	NZ_CP009273	1770540	0	G	A	bias_e_value=0.0269416	bias_p_value=5.81708e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.1	fisher_strand_p_value=2.51796e-10	frequency=2.716e-01	ks_quality_p_value=1	major_base=G	major_cov=15/44	major_frequency=7.284e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.716e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=15/44	total_cov=37/44
RA	155	.	NZ_CP009273	1792110	0	T	C	bias_e_value=0.0003983	bias_p_value=8.59986e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.7	fisher_strand_p_value=3.1283e-12	frequency=2.447e-01	ks_quality_p_value=1	major_base=T	major_cov=56/15	major_frequency=7.553e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.447e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=56/15	total_cov=56/39
RA	156	.	NZ_CP009273	1812214	0	T	A	bias_e_value=2.34444	bias_p_value=5.06198e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=285.6	fisher_strand_p_value=2.80704e-08	frequency=2.115e-01	ks_quality_p_value=0.979574	major_base=T	major_cov=52/30	major_frequency=7.885e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.115e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=52/30	total_cov=52/52
RA	157	.	NZ_CP009273	1817694	0	C	T	bias_e_value=1.29213e-06	bias_p_value=2.78988e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.3	fisher_strand_p_value=8.34878e-15	frequency=2.151e-01	ks_quality_p_value=1	major_base=C	major_cov=66/7	major_frequency=7.849e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.151e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=66/7	total_cov=66/27
RA	158	.	NZ_CP009273	1819288	0	C	T	bias_e_value=2.31801e-05	bias_p_value=5.00491e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.5	fisher_strand_p_value=1.64439e-13	frequency=3.373e-01	ks_quality_p_value=1	major_base=C	major_cov=44/11	major_frequency=6.627e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=3.373e-01	polymorphism_score=44.6	prediction=polymorphism	ref_cov=44/11	total_cov=44/39
RA	159	.	NZ_CP009273	1819313	0	G	A	bias_e_value=1.85153e-11	bias_p_value=3.99771e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=140.7	fisher_strand_p_value=8.91064e-20	frequency=3.625e-01	ks_quality_p_value=1	major_base=G	major_cov=49/2	major_frequency=6.375e-01	minor_base=A	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=3.625e-01	polymorphism_score=30.5	prediction=polymorphism	ref_cov=49/2	total_cov=49/31
RA	160	.	NZ_CP009273	1819318	0	G	A	bias_e_value=3.73705e-09	bias_p_value=8.06882e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.6	fisher_strand_p_value=2.04648e-17	frequency=3.375e-01	ks_quality_p_value=1	major_base=G	major_cov=49/4	major_frequency=6.625e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.375e-01	polymorphism_score=26.8	prediction=polymorphism	ref_cov=49/4	total_cov=49/31
RA	161	.	NZ_CP009273	1856123	0	G	T	bias_e_value=0.00674454	bias_p_value=1.45624e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.3	fisher_strand_p_value=5.93221e-11	frequency=2.113e-01	ks_quality_p_value=1	major_base=G	major_cov=6/50	major_frequency=7.887e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.113e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=6/50	total_cov=21/50
RA	162	.	NZ_CP009273	1861959	0	T	A	bias_e_value=0.0106715	bias_p_value=2.30412e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.9	fisher_strand_p_value=9.57279e-11	frequency=2.444e-01	ks_quality_p_value=1	major_base=T	major_cov=51/17	major_frequency=7.556e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.444e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=51/17	total_cov=51/39
RA	163	.	NZ_CP009273	1870272	0	A	G	bias_e_value=0.0333317	bias_p_value=7.19678e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.9	fisher_strand_p_value=3.14546e-10	frequency=2.644e-01	ks_quality_p_value=1	major_base=A	major_cov=18/46	major_frequency=7.356e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.644e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=18/46	total_cov=41/46
RA	164	.	NZ_CP009273	1932051	0	T	A	bias_e_value=4.67073	bias_p_value=1.00848e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.2	fisher_strand_p_value=5.70423e-08	frequency=2.188e-01	ks_quality_p_value=1	major_base=T	major_cov=27/48	major_frequency=7.812e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.188e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=27/48	total_cov=48/48
RA	165	.	NZ_CP009273	1961539	0	T	C	bias_e_value=0.237706	bias_p_value=5.13242e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.8	fisher_strand_p_value=2.46501e-09	frequency=2.150e-01	ks_quality_p_value=1	major_base=T	major_cov=55/29	major_frequency=7.850e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.150e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=55/29	total_cov=55/52
RA	166	.	NZ_CP009273	1967792	0	T	C	bias_e_value=0.000195595	bias_p_value=4.22317e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.8	fisher_strand_p_value=1.49608e-12	frequency=3.200e-01	ks_quality_p_value=1	major_base=T	major_cov=42/9	major_frequency=6.800e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=3.200e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=42/9	total_cov=42/33
RA	167	.	NZ_CP009273	1977673	0	G	C	bias_e_value=0.163567	bias_p_value=3.53164e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.3	fisher_strand_p_value=1.6648e-09	frequency=2.447e-01	ks_quality_p_value=1	major_base=G	major_cov=23/48	major_frequency=7.553e-01	minor_base=C	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.447e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=23/48	total_cov=46/48
RA	168	.	NZ_CP009273	1980476	0	A	C	bias_e_value=4.38576e-06	bias_p_value=9.46948e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.3	fisher_strand_p_value=2.94484e-14	frequency=2.889e-01	ks_quality_p_value=1	major_base=A	major_cov=53/11	major_frequency=7.111e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.889e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=53/11	total_cov=53/39
RA	169	.	NZ_CP009273	1980482	0	A	C	bias_e_value=0.0477974	bias_p_value=1.03201e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=230.9	fisher_strand_p_value=4.58616e-10	frequency=2.283e-01	ks_quality_p_value=1	major_base=A	major_cov=52/19	major_frequency=7.717e-01	minor_base=C	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.283e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=52/19	total_cov=52/40
RA	170	.	NZ_CP009273	1983251	0	T	G	bias_e_value=0.000445867	bias_p_value=9.6269e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=221.6	fisher_strand_p_value=3.51688e-12	frequency=2.903e-01	ks_quality_p_value=1	major_base=T	major_cov=17/49	major_frequency=7.097e-01	minor_base=G	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.903e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=17/49	total_cov=45/49
RA	171	.	NZ_CP009273	1984927	0	A	C	bias_e_value=0.000786623	bias_p_value=1.69843e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.7	fisher_strand_p_value=6.34123e-12	frequency=2.857e-01	ks_quality_p_value=1	major_base=A	major_cov=45/10	major_frequency=7.143e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.857e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=45/10	total_cov=45/32
RA	172	.	NZ_CP009273	1995350	0	G	A	bias_e_value=0.188978	bias_p_value=4.08031e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.4	fisher_strand_p_value=1.95221e-09	frequency=2.609e-01	ks_quality_p_value=0.992357	major_base=G	major_cov=46/22	major_frequency=7.391e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.609e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=46/22	total_cov=46/46
RA	173	.	NZ_CP009273	1995384	0	T	C	bias_e_value=0.715222	bias_p_value=1.54427e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.5	fisher_strand_p_value=8.07504e-09	frequency=2.360e-01	ks_quality_p_value=0.972622	major_base=T	major_cov=46/22	major_frequency=7.640e-01	minor_base=C	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.360e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=46/22	total_cov=46/43
RA	174	.	NZ_CP009273	1995390	0	C	A	bias_e_value=0.0197437	bias_p_value=4.26296e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.5	fisher_strand_p_value=1.81966e-10	frequency=2.667e-01	ks_quality_p_value=1	major_base=C	major_cov=47/19	major_frequency=7.333e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.667e-01	polymorphism_score=20.3	prediction=polymorphism	ref_cov=47/19	total_cov=47/43
RA	175	.	NZ_CP009273	1995392	0	G	A	bias_e_value=3.84454e-07	bias_p_value=8.3009e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=134.3	fisher_strand_p_value=2.39457e-15	frequency=3.556e-01	ks_quality_p_value=1	major_base=G	major_cov=47/11	major_frequency=6.444e-01	minor_base=A	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.556e-01	polymorphism_score=34.3	prediction=polymorphism	ref_cov=47/11	total_cov=47/43
RA	176	.	NZ_CP009273	1995399	0	A	C	bias_e_value=3.40453e-13	bias_p_value=7.35086e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.7	fisher_strand_p_value=1.50178e-21	frequency=4.286e-01	ks_quality_p_value=1	major_base=A	major_cov=48/4	major_frequency=5.714e-01	minor_base=C	minor_cov=0/39	new_cov=0/39	polymorphism_frequency=4.286e-01	polymorphism_score=22.1	prediction=polymorphism	ref_cov=48/4	total_cov=48/43
RA	177	.	NZ_CP009273	2001854	0	G	T	bias_e_value=0.377139	bias_p_value=8.14297e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.0	fisher_strand_p_value=4.00423e-09	frequency=2.353e-01	ks_quality_p_value=1	major_base=G	major_cov=28/50	major_frequency=7.647e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.353e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=28/50	total_cov=53/50
RA	178	.	NZ_CP009273	2007703	0	C	A	bias_e_value=0.0534216	bias_p_value=1.15345e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.1	fisher_strand_p_value=5.15245e-10	frequency=2.100e-01	ks_quality_p_value=1	major_base=C	major_cov=57/22	major_frequency=7.900e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.100e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=57/22	total_cov=58/43
RA	179	.	NZ_CP009273	2033556	0	C	G	bias_e_value=0.00228317	bias_p_value=4.92969e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.5	fisher_strand_p_value=1.91995e-11	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=8/42	major_frequency=7.143e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.857e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=8/42	total_cov=28/43
RA	180	.	NZ_CP009273	2040060	0	T	C	bias_e_value=1.61423	bias_p_value=3.48536e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=138.7	fisher_strand_p_value=1.85356e-08	frequency=2.459e-01	ks_quality_p_value=1	major_base=T	major_cov=37/9	major_frequency=7.541e-01	minor_base=C	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.459e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=37/9	total_cov=37/24
RA	181	.	NZ_CP009273	2089571	0	A	G	bias_e_value=0.00152742	bias_p_value=3.29791e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.3	fisher_strand_p_value=1.26385e-11	frequency=3.714e-01	ks_quality_p_value=1	major_base=A	major_cov=9/35	major_frequency=6.286e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.714e-01	polymorphism_score=22.2	prediction=polymorphism	ref_cov=9/35	total_cov=35/35
RA	182	.	NZ_CP009273	2141210	0	A	G	bias_e_value=0.0163393	bias_p_value=3.52789e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.8	fisher_strand_p_value=1.4933e-10	frequency=2.754e-01	ks_quality_p_value=1	major_base=A	major_cov=9/41	major_frequency=7.246e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.754e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=9/41	total_cov=28/41
RA	183	.	NZ_CP009273	2141218	0	C	A	bias_e_value=0.00164361	bias_p_value=3.54878e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.8	fisher_strand_p_value=1.37912e-11	frequency=2.817e-01	ks_quality_p_value=0.989014	major_base=C	major_cov=8/43	major_frequency=7.183e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.817e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=8/43	total_cov=28/43
RA	184	.	NZ_CP009273	2145066	0	C	T	bias_e_value=557537	bias_p_value=0.12038	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.3	fisher_strand_p_value=0.0258601	frequency=2.931e-01	ks_quality_p_value=1	major_base=C	major_cov=10/31	major_frequency=7.069e-01	minor_base=T	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.931e-01	polymorphism_score=14.6	prediction=polymorphism	ref_cov=10/31	total_cov=10/48
RA	185	.	NZ_CP009273	2145084	0	C	A	bias_e_value=59662.8	bias_p_value=0.0128821	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.4	fisher_strand_p_value=0.00175359	frequency=3.966e-01	ks_quality_p_value=1	major_base=C	major_cov=12/23	major_frequency=6.034e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.966e-01	polymorphism_score=34.9	prediction=polymorphism	ref_cov=12/23	total_cov=12/46
RA	186	.	NZ_CP009273	2145089	0	G	A	bias_e_value=3953800	bias_p_value=0.853682	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.7	fisher_strand_p_value=0.510411	frequency=3.571e-01	ks_quality_p_value=1	major_base=G	major_cov=7/29	major_frequency=6.429e-01	minor_base=A	minor_cov=6/14	new_cov=6/14	polymorphism_frequency=3.571e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=7/29	total_cov=13/43
RA	187	.	NZ_CP009273	2145105	0	T	A	bias_e_value=130392	bias_p_value=0.0281535	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.5	fisher_strand_p_value=0.00437761	frequency=3.636e-01	ks_quality_p_value=1	major_base=T	major_cov=11/24	major_frequency=6.364e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=3.636e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=11/24	total_cov=15/44
RA	188	.	NZ_CP009273	2145111	0	C	A	bias_e_value=1.13653e-05	bias_p_value=2.45393e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.9	fisher_strand_p_value=0.000630951	frequency=5.345e-01	ks_quality_p_value=1.24764e-10	major_base=A	major_cov=1/30	major_frequency=5.345e-01	minor_base=C	minor_cov=11/16	new_cov=1/30	polymorphism_frequency=5.345e-01	polymorphism_score=107.5	prediction=polymorphism	ref_cov=11/16	total_cov=15/46
RA	189	.	NZ_CP009273	2145134	0	G	T	bias_e_value=3297.72	bias_p_value=0.000712025	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.9	fisher_strand_p_value=6.71145e-05	frequency=3.770e-01	ks_quality_p_value=1	major_base=G	major_cov=17/21	major_frequency=6.230e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.770e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=17/21	total_cov=17/44
RA	190	.	NZ_CP009273	2145139	0	A	T	bias_e_value=668117	bias_p_value=0.144256	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.6	fisher_strand_p_value=0.0326151	frequency=3.390e-01	ks_quality_p_value=1	major_base=A	major_cov=15/24	major_frequency=6.610e-01	minor_base=T	minor_cov=2/18	new_cov=2/18	polymorphism_frequency=3.390e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=15/24	total_cov=17/43
RA	191	.	NZ_CP009273	2145143	0	A	T	bias_e_value=2677380	bias_p_value=0.578085	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.0	fisher_strand_p_value=0.236915	frequency=3.729e-01	ks_quality_p_value=1	major_base=A	major_cov=13/24	major_frequency=6.271e-01	minor_base=T	minor_cov=4/18	new_cov=4/18	polymorphism_frequency=3.729e-01	polymorphism_score=22.3	prediction=polymorphism	ref_cov=13/24	total_cov=17/43
RA	192	.	NZ_CP009273	2145146	0	G	T	bias_e_value=912919	bias_p_value=0.197112	consensus_reject=FREQUENCY_CUTOFF	consensus_score=88.4	fisher_strand_p_value=0.0491099	frequency=4.194e-01	ks_quality_p_value=1	major_base=G	major_cov=15/21	major_frequency=5.806e-01	minor_base=T	minor_cov=4/22	new_cov=4/22	polymorphism_frequency=4.194e-01	polymorphism_score=23.3	prediction=polymorphism	ref_cov=15/21	total_cov=19/44
RA	193	.	NZ_CP009273	2145149	0	T	A	bias_e_value=9244.7	bias_p_value=0.00199606	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.7	fisher_strand_p_value=0.000214046	frequency=3.175e-01	ks_quality_p_value=0.985343	major_base=T	major_cov=19/24	major_frequency=6.825e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=3.175e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=19/24	total_cov=19/44
RA	194	.	NZ_CP009273	2145154	0	T	G	bias_e_value=1394.4	bias_p_value=0.000301071	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.3	fisher_strand_p_value=2.60548e-05	frequency=3.710e-01	ks_quality_p_value=1	major_base=T	major_cov=19/20	major_frequency=6.290e-01	minor_base=G	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=3.710e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=19/20	total_cov=19/46
RA	195	.	NZ_CP009273	2145157	0	C	G	bias_e_value=107548	bias_p_value=0.0232212	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.6	fisher_strand_p_value=0.00350229	frequency=2.923e-01	ks_quality_p_value=0.995749	major_base=C	major_cov=19/27	major_frequency=7.077e-01	minor_base=G	minor_cov=1/18	new_cov=1/18	polymorphism_frequency=2.923e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=19/27	total_cov=20/45
RA	196	.	NZ_CP009273	2145164	0	A	T	bias_e_value=826.277	bias_p_value=0.000178405	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.0	fisher_strand_p_value=1.47115e-05	frequency=3.281e-01	ks_quality_p_value=1	major_base=A	major_cov=22/21	major_frequency=6.719e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=3.281e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=22/21	total_cov=22/43
RA	197	.	NZ_CP009273	2145167	0	G	T	bias_e_value=1575490	bias_p_value=0.340171	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.4	fisher_strand_p_value=0.104345	frequency=3.871e-01	ks_quality_p_value=1	major_base=G	major_cov=16/22	major_frequency=6.129e-01	minor_base=T	minor_cov=5/19	new_cov=5/19	polymorphism_frequency=3.871e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=16/22	total_cov=21/42
RA	198	.	NZ_CP009273	2162447	0	A	C	bias_e_value=1.36451	bias_p_value=2.94618e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.5	fisher_strand_p_value=1.55217e-08	frequency=2.727e-01	ks_quality_p_value=1	major_base=A	major_cov=40/24	major_frequency=7.273e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.727e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=40/24	total_cov=40/49
RA	199	.	NZ_CP009273	2178678	0	T	G	bias_e_value=1.49143e-08	bias_p_value=3.2202e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.4	fisher_strand_p_value=8.47263e-17	frequency=3.611e-01	ks_quality_p_value=1	major_base=T	major_cov=16/53	major_frequency=6.389e-01	minor_base=G	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=3.611e-01	polymorphism_score=29.6	prediction=polymorphism	ref_cov=16/53	total_cov=58/53
RA	200	.	NZ_CP009273	2178717	0	A	G	bias_e_value=3.3348e-08	bias_p_value=7.20032e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.5	fisher_strand_p_value=1.93659e-16	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=11/53	major_frequency=6.667e-01	minor_base=G	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.333e-01	polymorphism_score=27.7	prediction=polymorphism	ref_cov=11/53	total_cov=43/53
RA	201	.	NZ_CP009273	2221754	0	T	C	bias_e_value=4534730	bias_p_value=0.979113	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.9	fisher_strand_p_value=0.802702	frequency=4.091e-01	ks_quality_p_value=1	major_base=T	major_cov=21/18	major_frequency=5.909e-01	minor_base=C	minor_cov=13/14	new_cov=13/14	polymorphism_frequency=4.091e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=21/18	total_cov=34/33
RA	202	.	NZ_CP009273	2221757	0	G	C	bias_e_value=2421780	bias_p_value=0.522898	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.7	fisher_strand_p_value=0.200628	frequency=3.235e-01	ks_quality_p_value=1	major_base=G	major_cov=21/25	major_frequency=6.765e-01	minor_base=C	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=3.235e-01	polymorphism_score=14.5	prediction=polymorphism	ref_cov=21/25	total_cov=35/33
RA	203	.	NZ_CP009273	2241903	0	C	A	bias_e_value=0.00633131	bias_p_value=1.36702e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.3	fisher_strand_p_value=5.55384e-11	frequency=2.540e-01	ks_quality_p_value=1	major_base=C	major_cov=42/5	major_frequency=7.460e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.540e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=42/5	total_cov=42/21
RA	204	.	NZ_CP009273	2246139	0	G	T	bias_e_value=0.00821491	bias_p_value=1.77372e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.1	fisher_strand_p_value=7.28652e-11	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=4/41	major_frequency=7.500e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.500e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=4/41	total_cov=19/41
RA	205	.	NZ_CP009273	2255290	0	T	G	bias_e_value=1.91533	bias_p_value=4.13547e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.5	fisher_strand_p_value=2.22064e-08	frequency=2.472e-01	ks_quality_p_value=1	major_base=T	major_cov=24/43	major_frequency=7.528e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.472e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=24/43	total_cov=46/43
RA	206	.	NZ_CP009273	2255293	0	C	T	bias_e_value=0.0310468	bias_p_value=6.70345e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.1	fisher_strand_p_value=2.92036e-10	frequency=2.921e-01	ks_quality_p_value=1	major_base=C	major_cov=20/43	major_frequency=7.079e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.921e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=20/43	total_cov=46/43
RA	207	.	NZ_CP009273	2258443	0	A	G	bias_e_value=0.00191202	bias_p_value=4.12831e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.9	fisher_strand_p_value=1.59637e-11	frequency=3.247e-01	ks_quality_p_value=1	major_base=A	major_cov=12/40	major_frequency=6.753e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=3.247e-01	polymorphism_score=30.8	prediction=polymorphism	ref_cov=12/40	total_cov=37/40
RA	208	.	NZ_CP009273	2258715	0	A	G	bias_e_value=0.00629732	bias_p_value=1.35968e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.3	fisher_strand_p_value=5.52277e-11	frequency=2.472e-01	ks_quality_p_value=1	major_base=A	major_cov=16/51	major_frequency=7.528e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.472e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=16/51	total_cov=39/51
RA	209	.	NZ_CP009273	2319929	0	T	G	bias_e_value=9.828e-11	bias_p_value=2.12201e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=186.2	fisher_strand_p_value=4.91701e-19	frequency=3.250e-01	ks_quality_p_value=1	major_base=T	major_cov=2/52	major_frequency=6.750e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.250e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=2/52	total_cov=28/52
RA	210	.	NZ_CP009273	2326302	0	A	G	bias_e_value=0.00372227	bias_p_value=8.03692e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.9	fisher_strand_p_value=3.19339e-11	frequency=2.532e-01	ks_quality_p_value=1	major_base=A	major_cov=11/48	major_frequency=7.468e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.532e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=11/48	total_cov=31/48
RA	211	.	NZ_CP009273	2330073	0	A	C	bias_e_value=8.33764	bias_p_value=1.80021e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.5	fisher_strand_p_value=1.06021e-07	frequency=2.241e-01	ks_quality_p_value=0.995032	major_base=A	major_cov=48/42	major_frequency=7.759e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.241e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=48/42	total_cov=48/68
RA	212	.	NZ_CP009273	2360479	0	T	C	bias_e_value=0.00035477	bias_p_value=7.65998e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.7	fisher_strand_p_value=2.77429e-12	frequency=2.895e-01	ks_quality_p_value=1	major_base=T	major_cov=45/9	major_frequency=7.105e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.895e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=45/9	total_cov=45/31
RA	213	.	NZ_CP009273	2360878	0	T	A	bias_e_value=244.276	bias_p_value=5.27426e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.3	fisher_strand_p_value=3.92168e-06	frequency=2.759e-01	ks_quality_p_value=1	major_base=T	major_cov=15/27	major_frequency=7.241e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.759e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=15/27	total_cov=32/41
RA	214	.	NZ_CP009273	2363745	0	T	G	bias_e_value=0.0385249	bias_p_value=8.31808e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.7	fisher_strand_p_value=3.65977e-10	frequency=2.371e-01	ks_quality_p_value=1	major_base=T	major_cov=22/52	major_frequency=7.629e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.371e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=22/52	total_cov=46/52
RA	215	.	NZ_CP009273	2370639	0	C	A	bias_e_value=0.00274936	bias_p_value=5.93625e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.9	fisher_strand_p_value=2.40778e-11	frequency=2.644e-01	ks_quality_p_value=0.967494	major_base=C	major_cov=49/15	major_frequency=7.356e-01	minor_base=A	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.644e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=49/15	total_cov=49/38
RA	216	.	NZ_CP009273	2372447	0	C	T	bias_e_value=8.37078	bias_p_value=1.80737e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=72.8	fisher_strand_p_value=1.0594e-07	frequency=3.220e-01	ks_quality_p_value=1	major_base=C	major_cov=12/28	major_frequency=6.780e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=3.220e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=12/28	total_cov=31/28
RA	217	.	NZ_CP009273	2380126	0	G	T	bias_e_value=0.00218929	bias_p_value=4.72699e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.0	fisher_strand_p_value=1.83788e-11	frequency=2.366e-01	ks_quality_p_value=1	major_base=G	major_cov=55/16	major_frequency=7.634e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.366e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=55/16	total_cov=55/38
RA	218	.	NZ_CP009273	2380132	0	A	T	bias_e_value=0.00163877	bias_p_value=3.53833e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=258.9	fisher_strand_p_value=1.35979e-11	frequency=2.421e-01	ks_quality_p_value=1	major_base=A	major_cov=55/17	major_frequency=7.579e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.421e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=55/17	total_cov=55/40
RA	219	.	NZ_CP009273	2380341	0	G	A	bias_e_value=1.33552e-08	bias_p_value=2.88358e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.6	fisher_strand_p_value=7.56438e-17	frequency=2.973e-01	ks_quality_p_value=1	major_base=G	major_cov=2/50	major_frequency=7.027e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.973e-01	polymorphism_score=34.2	prediction=polymorphism	ref_cov=2/50	total_cov=26/50
RA	220	.	NZ_CP009273	2380347	0	T	A	bias_e_value=0.000240323	bias_p_value=5.18891e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.8	fisher_strand_p_value=1.85222e-12	frequency=2.432e-01	ks_quality_p_value=1	major_base=T	major_cov=6/50	major_frequency=7.568e-01	minor_base=A	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.432e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=6/50	total_cov=25/50
RA	221	.	NZ_CP009273	2380357	0	A	T	bias_e_value=1.11507e-05	bias_p_value=2.40759e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.3	fisher_strand_p_value=7.71846e-14	frequency=2.609e-01	ks_quality_p_value=1	major_base=A	major_cov=3/48	major_frequency=7.391e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.609e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=3/48	total_cov=21/48
RA	222	.	NZ_CP009273	2380362	0	C	T	bias_e_value=3.63453e-06	bias_p_value=7.84748e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=128.0	fisher_strand_p_value=2.4258e-14	frequency=2.714e-01	ks_quality_p_value=1	major_base=C	major_cov=3/48	major_frequency=7.286e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.714e-01	polymorphism_score=38.5	prediction=polymorphism	ref_cov=3/48	total_cov=23/48
RA	223	.	NZ_CP009273	2380376	0	A	T	bias_e_value=0.0247503	bias_p_value=5.34394e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.6	fisher_strand_p_value=2.30431e-10	frequency=2.361e-01	ks_quality_p_value=1	major_base=A	major_cov=9/46	major_frequency=7.639e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.361e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=9/46	total_cov=26/46
RA	224	.	NZ_CP009273	2403301	0	A	C	bias_e_value=0.00182083	bias_p_value=3.93144e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.8	fisher_strand_p_value=1.51725e-11	frequency=2.564e-01	ks_quality_p_value=1	major_base=A	major_cov=48/10	major_frequency=7.436e-01	minor_base=C	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.564e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=48/10	total_cov=48/30
RA	225	.	NZ_CP009273	2428340	0	G	T	bias_e_value=0.0151599	bias_p_value=3.27324e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.3	fisher_strand_p_value=1.38093e-10	frequency=2.644e-01	ks_quality_p_value=1	major_base=G	major_cov=17/47	major_frequency=7.356e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.644e-01	polymorphism_score=17.7	prediction=polymorphism	ref_cov=17/47	total_cov=40/47
RA	226	.	NZ_CP009273	2428342	0	A	G	bias_e_value=0.288484	bias_p_value=6.22879e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.2	fisher_strand_p_value=3.0211e-09	frequency=2.471e-01	ks_quality_p_value=1	major_base=A	major_cov=19/45	major_frequency=7.529e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.471e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=19/45	total_cov=41/45
RA	227	.	NZ_CP009273	2428361	0	T	G	bias_e_value=0.0111214	bias_p_value=2.40126e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.9	fisher_strand_p_value=9.99424e-11	frequency=2.619e-01	ks_quality_p_value=1	major_base=T	major_cov=15/47	major_frequency=7.381e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.619e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=15/47	total_cov=38/47
RA	228	.	NZ_CP009273	2428397	0	G	T	bias_e_value=52.2533	bias_p_value=1.12822e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.0	fisher_strand_p_value=7.70128e-07	frequency=2.192e-01	ks_quality_p_value=0.969706	major_base=G	major_cov=19/38	major_frequency=7.808e-01	minor_base=T	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.192e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=19/38	total_cov=37/38
RA	229	.	NZ_CP009273	2473855	0	C	G	bias_e_value=0.8658	bias_p_value=1.86938e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.6	fisher_strand_p_value=9.60585e-09	frequency=2.812e-01	ks_quality_p_value=1	major_base=C	major_cov=11/35	major_frequency=7.188e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.812e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=11/35	total_cov=29/35
RA	230	.	NZ_CP009273	2476733	0	G	A	bias_e_value=3.17955e-09	bias_p_value=6.8651e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.4	fisher_strand_p_value=1.73389e-17	frequency=3.852e-01	ks_quality_p_value=1	major_base=G	major_cov=54/21	major_frequency=6.148e-01	minor_base=A	minor_cov=0/47	new_cov=0/47	polymorphism_frequency=3.852e-01	polymorphism_score=49.4	prediction=polymorphism	ref_cov=54/21	total_cov=54/69
RA	231	.	NZ_CP009273	2476740	0	C	A	bias_e_value=0.424079	bias_p_value=9.15646e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.2	fisher_strand_p_value=4.53009e-09	frequency=2.479e-01	ks_quality_p_value=1	major_base=C	major_cov=50/41	major_frequency=7.521e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.479e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=50/41	total_cov=50/71
RA	232	.	NZ_CP009273	2476747	0	T	A	bias_e_value=5.24746e-06	bias_p_value=1.133e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.5	fisher_strand_p_value=3.54384e-14	frequency=3.621e-01	ks_quality_p_value=1	major_base=T	major_cov=49/25	major_frequency=6.379e-01	minor_base=A	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=3.621e-01	polymorphism_score=44.4	prediction=polymorphism	ref_cov=49/25	total_cov=49/67
RA	233	.	NZ_CP009273	2505251	0	A	C	bias_e_value=4.48405e-07	bias_p_value=9.68171e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.0	fisher_strand_p_value=2.80571e-15	frequency=2.500e-01	ks_quality_p_value=1	major_base=A	major_cov=61/8	major_frequency=7.500e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.500e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=61/8	total_cov=61/31
RA	234	.	NZ_CP009273	2544652	0	T	A	bias_e_value=269.106	bias_p_value=5.81039e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.3	fisher_strand_p_value=4.35419e-06	frequency=2.043e-01	ks_quality_p_value=1	major_base=T	major_cov=40/34	major_frequency=7.957e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.043e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=40/34	total_cov=40/53
RA	235	.	NZ_CP009273	2576783	0	T	G	bias_e_value=0.000242686	bias_p_value=5.23993e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.2	fisher_strand_p_value=1.8711e-12	frequency=2.476e-01	ks_quality_p_value=1	major_base=T	major_cov=20/59	major_frequency=7.524e-01	minor_base=G	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.476e-01	polymorphism_score=13.2	prediction=polymorphism	ref_cov=20/59	total_cov=46/59
RA	236	.	NZ_CP009273	2609092	0	T	A	bias_e_value=0.00164503	bias_p_value=3.55185e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.5	fisher_strand_p_value=1.3652e-11	frequency=2.333e-01	ks_quality_p_value=1	major_base=T	major_cov=14/55	major_frequency=7.667e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.333e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=14/55	total_cov=35/55
RA	237	.	NZ_CP009273	2612584	0	G	A	bias_e_value=3.44576	bias_p_value=7.43988e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.6	fisher_strand_p_value=4.13288e-08	frequency=2.800e-01	ks_quality_p_value=1	major_base=G	major_cov=30/6	major_frequency=7.200e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.800e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=30/6	total_cov=30/20
RA	238	.	NZ_CP009273	2617867	0	A	T	bias_e_value=1.33787	bias_p_value=2.88865e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.0	fisher_strand_p_value=1.52019e-08	frequency=2.429e-01	ks_quality_p_value=1	major_base=A	major_cov=13/40	major_frequency=7.571e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.429e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=13/40	total_cov=30/40
RA	239	.	NZ_CP009273	2617873	0	A	T	bias_e_value=1.74113	bias_p_value=3.75934e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.2	fisher_strand_p_value=2.0078e-08	frequency=2.464e-01	ks_quality_p_value=1	major_base=A	major_cov=13/39	major_frequency=7.536e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.464e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=13/39	total_cov=30/39
RA	240	.	NZ_CP009273	2617876	0	G	T	bias_e_value=0.000379693	bias_p_value=8.1981e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.9	fisher_strand_p_value=2.97678e-12	frequency=3.239e-01	ks_quality_p_value=1	major_base=G	major_cov=8/40	major_frequency=6.761e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=3.239e-01	polymorphism_score=21.3	prediction=polymorphism	ref_cov=8/40	total_cov=31/40
RA	241	.	NZ_CP009273	2621979	0	T	A	bias_e_value=3.55777e-06	bias_p_value=7.68173e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.7	fisher_strand_p_value=2.37295e-14	frequency=2.970e-01	ks_quality_p_value=1	major_base=T	major_cov=55/16	major_frequency=7.030e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.970e-01	polymorphism_score=28.1	prediction=polymorphism	ref_cov=55/16	total_cov=55/46
RA	242	.	NZ_CP009273	2658255	0	T	G	bias_e_value=1.52386e-09	bias_p_value=3.29022e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.8	fisher_strand_p_value=8.15463e-18	frequency=3.039e-01	ks_quality_p_value=1	major_base=T	major_cov=10/61	major_frequency=6.961e-01	minor_base=G	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.039e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=10/61	total_cov=42/61
RA	243	.	NZ_CP009273	2819821	0	G	A	bias_e_value=0.00105477	bias_p_value=2.2774e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.2	fisher_strand_p_value=8.60071e-12	frequency=2.093e-01	ks_quality_p_value=1	major_base=G	major_cov=58/10	major_frequency=7.907e-01	minor_base=A	minor_cov=0/18	new_cov=0/18	polymorphism_frequency=2.093e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=58/10	total_cov=58/28
RA	244	.	NZ_CP009273	2821865	0	T	G	bias_e_value=70.6299	bias_p_value=1.525e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.8	fisher_strand_p_value=1.03148e-06	frequency=2.174e-01	ks_quality_p_value=1	major_base=T	major_cov=25/47	major_frequency=7.826e-01	minor_base=G	minor_cov=19/1	new_cov=19/1	polymorphism_frequency=2.174e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=25/47	total_cov=44/48
RA	245	.	NZ_CP009273	2845013	0	T	G	bias_e_value=0.0643849	bias_p_value=1.39016e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.8	fisher_strand_p_value=6.26455e-10	frequency=2.386e-01	ks_quality_p_value=1	major_base=T	major_cov=18/49	major_frequency=7.614e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.386e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=18/49	total_cov=40/49
RA	246	.	NZ_CP009273	2867760	0	T	C	bias_e_value=1.01207e-05	bias_p_value=2.1852e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.1	fisher_strand_p_value=6.98311e-14	frequency=2.637e-01	ks_quality_p_value=1	major_base=T	major_cov=56/11	major_frequency=7.363e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.637e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=56/11	total_cov=56/35
RA	247	.	NZ_CP009273	2872306	0	C	T	bias_e_value=0.00053738	bias_p_value=1.16028e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.7	fisher_strand_p_value=4.26893e-12	frequency=2.157e-01	ks_quality_p_value=1	major_base=C	major_cov=17/63	major_frequency=7.843e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.157e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=17/63	total_cov=39/63
RA	248	.	NZ_CP009273	2885554	0	A	T	bias_e_value=0.286757	bias_p_value=6.1915e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.1	fisher_strand_p_value=3.00209e-09	frequency=2.105e-01	ks_quality_p_value=1	major_base=A	major_cov=22/53	major_frequency=7.895e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.105e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=22/53	total_cov=42/53
RA	249	.	NZ_CP009273	2885594	0	A	T	bias_e_value=5.32699	bias_p_value=1.15017e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.2	fisher_strand_p_value=6.5574e-08	frequency=2.143e-01	ks_quality_p_value=1	major_base=A	major_cov=21/45	major_frequency=7.857e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.143e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=21/45	total_cov=39/45
RA	250	.	NZ_CP009273	2897045	0	G	T	bias_e_value=5.21634e-05	bias_p_value=1.12628e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=258.2	fisher_strand_p_value=3.80537e-13	frequency=2.088e-01	ks_quality_p_value=1	major_base=G	major_cov=9/63	major_frequency=7.912e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.088e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=9/63	total_cov=28/63
RA	251	.	NZ_CP009273	2897051	0	C	A	bias_e_value=3.28541e-10	bias_p_value=7.09367e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.8	fisher_strand_p_value=1.70706e-18	frequency=2.759e-01	ks_quality_p_value=0.991281	major_base=C	major_cov=3/60	major_frequency=7.241e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.759e-01	polymorphism_score=38.1	prediction=polymorphism	ref_cov=3/60	total_cov=27/60
RA	252	.	NZ_CP009273	2897074	0	G	A	bias_e_value=1.18174e-08	bias_p_value=2.55155e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.3	fisher_strand_p_value=6.6714e-17	frequency=2.366e-01	ks_quality_p_value=1	major_base=G	major_cov=5/66	major_frequency=7.634e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.366e-01	polymorphism_score=42.6	prediction=polymorphism	ref_cov=5/66	total_cov=27/66
RA	253	.	NZ_CP009273	2897114	0	G	A	bias_e_value=0.000412769	bias_p_value=8.91226e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.2	fisher_strand_p_value=3.24631e-12	frequency=2.020e-01	ks_quality_p_value=1	major_base=G	major_cov=14/65	major_frequency=7.980e-01	minor_base=A	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.020e-01	polymorphism_score=24.8	prediction=polymorphism	ref_cov=14/65	total_cov=34/65
RA	254	.	NZ_CP009273	2910478	0	A	G	bias_e_value=0.119092	bias_p_value=2.57136e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.9	fisher_strand_p_value=1.1934e-09	frequency=2.268e-01	ks_quality_p_value=1	major_base=A	major_cov=23/52	major_frequency=7.732e-01	minor_base=G	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.268e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=23/52	total_cov=45/52
RA	255	.	NZ_CP009273	2923385	0	A	T	bias_e_value=26.6452	bias_p_value=5.75308e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.6	fisher_strand_p_value=3.63486e-07	frequency=2.159e-01	ks_quality_p_value=1	major_base=A	major_cov=26/43	major_frequency=7.841e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.159e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=26/43	total_cov=45/43
RA	256	.	NZ_CP009273	2923406	0	G	T	bias_e_value=0.0411046	bias_p_value=8.87508e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.1	fisher_strand_p_value=3.95402e-10	frequency=2.907e-01	ks_quality_p_value=0.990514	major_base=G	major_cov=18/43	major_frequency=7.093e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.907e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=18/43	total_cov=43/43
RA	257	.	NZ_CP009273	2952130	0	A	T	bias_e_value=0.00107082	bias_p_value=2.31205e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.3	fisher_strand_p_value=8.73675e-12	frequency=2.206e-01	ks_quality_p_value=1	major_base=A	major_cov=4/49	major_frequency=7.794e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.206e-01	polymorphism_score=21.7	prediction=polymorphism	ref_cov=4/49	total_cov=19/49
RA	258	.	NZ_CP009273	2977800	0	A	C	bias_e_value=1.88296e-08	bias_p_value=4.06558e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.3	fisher_strand_p_value=1.07647e-16	frequency=3.014e-01	ks_quality_p_value=1	major_base=A	major_cov=49/2	major_frequency=6.986e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.014e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=49/2	total_cov=49/24
RA	259	.	NZ_CP009273	2997261	0	T	A	bias_e_value=9.91388	bias_p_value=2.14055e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.0	fisher_strand_p_value=1.26805e-07	frequency=2.121e-01	ks_quality_p_value=1	major_base=T	major_cov=31/47	major_frequency=7.879e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.121e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=31/47	total_cov=52/47
RA	260	.	NZ_CP009273	2997266	0	G	T	bias_e_value=5.26304	bias_p_value=1.13637e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.9	fisher_strand_p_value=6.51057e-08	frequency=2.200e-01	ks_quality_p_value=0.994375	major_base=G	major_cov=31/47	major_frequency=7.800e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.200e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=31/47	total_cov=53/47
RA	261	.	NZ_CP009273	2997280	0	T	G	bias_e_value=6.82606e-06	bias_p_value=1.47384e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.7	fisher_strand_p_value=4.64943e-14	frequency=3.542e-01	ks_quality_p_value=1	major_base=T	major_cov=16/46	major_frequency=6.458e-01	minor_base=G	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=3.542e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=16/46	total_cov=50/47
RA	262	.	NZ_CP009273	2999331	0	A	T	bias_e_value=0.355232	bias_p_value=7.66997e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=292.8	fisher_strand_p_value=3.76e-09	frequency=2.000e-01	ks_quality_p_value=1	major_base=A	major_cov=39/61	major_frequency=8.000e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.000e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=39/61	total_cov=64/61
RA	263	.	NZ_CP009273	2999337	0	C	A	bias_e_value=0.0566309	bias_p_value=1.22274e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=342.0	fisher_strand_p_value=5.47693e-10	frequency=2.160e-01	ks_quality_p_value=1	major_base=C	major_cov=37/61	major_frequency=7.840e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.160e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=37/61	total_cov=65/61
RA	264	.	NZ_CP009273	2999362	0	A	T	bias_e_value=0.00290963	bias_p_value=6.2823e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=310.2	fisher_strand_p_value=2.51626e-11	frequency=2.290e-01	ks_quality_p_value=0.982024	major_base=A	major_cov=36/65	major_frequency=7.710e-01	minor_base=T	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.290e-01	polymorphism_score=24.3	prediction=polymorphism	ref_cov=36/65	total_cov=66/65
RA	265	.	NZ_CP009273	2999371	0	C	T	bias_e_value=1.4359e-09	bias_p_value=3.10032e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=241.9	fisher_strand_p_value=7.67236e-18	frequency=3.308e-01	ks_quality_p_value=1	major_base=C	major_cov=23/64	major_frequency=6.692e-01	minor_base=T	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=3.308e-01	polymorphism_score=45.4	prediction=polymorphism	ref_cov=23/64	total_cov=66/64
RA	266	.	NZ_CP009273	2999373	0	G	T	bias_e_value=7.4471	bias_p_value=1.60793e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=336.5	fisher_strand_p_value=9.35685e-08	frequency=2.016e-01	ks_quality_p_value=1	major_base=G	major_cov=42/61	major_frequency=7.984e-01	minor_base=T	minor_cov=25/1	new_cov=25/1	polymorphism_frequency=2.016e-01	polymorphism_score=14.8	prediction=polymorphism	ref_cov=42/61	total_cov=68/63
RA	267	.	NZ_CP009273	2999396	0	C	A	bias_e_value=0.0365445	bias_p_value=7.89047e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=383.6	fisher_strand_p_value=3.46322e-10	frequency=2.059e-01	ks_quality_p_value=1	major_base=C	major_cov=42/66	major_frequency=7.941e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.059e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=42/66	total_cov=70/66
RA	268	.	NZ_CP009273	2999409	0	G	A	bias_e_value=4.7731e-05	bias_p_value=1.03058e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=295.8	fisher_strand_p_value=3.47124e-13	frequency=2.536e-01	ks_quality_p_value=1	major_base=G	major_cov=36/67	major_frequency=7.464e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.536e-01	polymorphism_score=51.5	prediction=polymorphism	ref_cov=36/67	total_cov=72/67
RA	269	.	NZ_CP009273	3009892	0	T	A	bias_e_value=0.0014799	bias_p_value=3.19531e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.0	fisher_strand_p_value=1.22298e-11	frequency=2.024e-01	ks_quality_p_value=1	major_base=T	major_cov=58/9	major_frequency=7.976e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=2.024e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=58/9	total_cov=58/26
RA	270	.	NZ_CP009273	3057409	0	A	T	bias_e_value=28.1681	bias_p_value=6.0819e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.1	fisher_strand_p_value=3.85707e-07	frequency=2.121e-01	ks_quality_p_value=1	major_base=A	major_cov=32/46	major_frequency=7.879e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.121e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=32/46	total_cov=53/46
RA	271	.	NZ_CP009273	3074041	0	A	G	bias_e_value=0.0078945	bias_p_value=1.70453e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.4	fisher_strand_p_value=6.99041e-11	frequency=2.740e-01	ks_quality_p_value=1	major_base=A	major_cov=10/43	major_frequency=7.260e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.740e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=10/43	total_cov=30/43
RA	272	.	NZ_CP009273	3074050	0	C	T	bias_e_value=0.00309476	bias_p_value=6.68203e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=154.7	fisher_strand_p_value=2.66332e-11	frequency=2.895e-01	ks_quality_p_value=0.989336	major_base=C	major_cov=11/43	major_frequency=7.105e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.895e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=11/43	total_cov=33/43
RA	273	.	NZ_CP009273	3085153	0	G	T	bias_e_value=5.00433	bias_p_value=1.08051e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.4	fisher_strand_p_value=6.13703e-08	frequency=2.360e-01	ks_quality_p_value=1	major_base=G	major_cov=43/25	major_frequency=7.640e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.360e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=43/25	total_cov=43/46
RA	274	.	NZ_CP009273	3125755	0	T	A	bias_e_value=9.73321	bias_p_value=2.10154e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.0	fisher_strand_p_value=1.2435e-07	frequency=2.326e-01	ks_quality_p_value=1	major_base=T	major_cov=42/24	major_frequency=7.674e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.326e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=42/24	total_cov=42/44
RA	275	.	NZ_CP009273	3129134	0	C	T	bias_e_value=0.186713	bias_p_value=4.03141e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.9	fisher_strand_p_value=1.91292e-09	frequency=2.021e-01	ks_quality_p_value=1	major_base=C	major_cov=20/55	major_frequency=7.979e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.021e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=20/55	total_cov=39/55
RA	276	.	NZ_CP009273	3151752	0	G	A	bias_e_value=0.000627586	bias_p_value=1.35505e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.4	fisher_strand_p_value=5.01525e-12	frequency=2.708e-01	ks_quality_p_value=1	major_base=G	major_cov=52/18	major_frequency=7.292e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.708e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=52/18	total_cov=52/44
RA	277	.	NZ_CP009273	3152252	0	T	C	bias_e_value=0.000297049	bias_p_value=6.4137e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.4	fisher_strand_p_value=2.30751e-12	frequency=2.581e-01	ks_quality_p_value=1	major_base=T	major_cov=54/15	major_frequency=7.419e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.581e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=54/15	total_cov=54/40
RA	278	.	NZ_CP009273	3171107	0	C	A	bias_e_value=4.85521e-06	bias_p_value=1.04831e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.5	fisher_strand_p_value=3.27073e-14	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=64/17	major_frequency=7.500e-01	minor_base=A	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.500e-01	polymorphism_score=18.9	prediction=polymorphism	ref_cov=64/17	total_cov=64/44
RA	279	.	NZ_CP009273	3173700	0	G	T	bias_e_value=0.0880386	bias_p_value=1.90088e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.6	fisher_strand_p_value=8.69443e-10	frequency=2.326e-01	ks_quality_p_value=1	major_base=G	major_cov=17/49	major_frequency=7.674e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.326e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=17/49	total_cov=37/49
RA	280	.	NZ_CP009273	3198481	0	A	G	bias_e_value=0.0448268	bias_p_value=9.67873e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.7	fisher_strand_p_value=4.28833e-10	frequency=2.045e-01	ks_quality_p_value=1	major_base=A	major_cov=15/55	major_frequency=7.955e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.045e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=15/55	total_cov=33/55
RA	281	.	NZ_CP009273	3199794	0	C	T	bias_e_value=1.12504e-09	bias_p_value=2.42912e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.9	fisher_strand_p_value=5.97437e-18	frequency=3.924e-01	ks_quality_p_value=1	major_base=C	major_cov=4/44	major_frequency=6.076e-01	minor_base=T	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.924e-01	polymorphism_score=35.4	prediction=polymorphism	ref_cov=4/44	total_cov=35/44
RA	282	.	NZ_CP009273	3199799	0	C	A	bias_e_value=3004770	bias_p_value=0.648773	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.4	fisher_strand_p_value=0.28983	frequency=2.405e-01	ks_quality_p_value=1	major_base=C	major_cov=29/31	major_frequency=7.595e-01	minor_base=A	minor_cov=6/13	new_cov=6/13	polymorphism_frequency=2.405e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=29/31	total_cov=35/44
RA	283	.	NZ_CP009273	3199803	0	T	A	bias_e_value=84.9323	bias_p_value=1.83381e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.6	fisher_strand_p_value=1.25718e-06	frequency=3.000e-01	ks_quality_p_value=1	major_base=T	major_cov=16/40	major_frequency=7.000e-01	minor_base=A	minor_cov=21/3	new_cov=21/3	polymorphism_frequency=3.000e-01	polymorphism_score=20.9	prediction=polymorphism	ref_cov=16/40	total_cov=37/43
RA	284	.	NZ_CP009273	3199805	0	C	A	bias_e_value=2602680	bias_p_value=0.561955	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.5	fisher_strand_p_value=0.225895	frequency=2.911e-01	ks_quality_p_value=1	major_base=C	major_cov=23/33	major_frequency=7.089e-01	minor_base=A	minor_cov=13/10	new_cov=13/10	polymorphism_frequency=2.911e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=23/33	total_cov=37/43
RA	285	.	NZ_CP009273	3199811	0	C	A	bias_e_value=0.000148127	bias_p_value=3.19827e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.1	fisher_strand_p_value=1.12156e-12	frequency=3.133e-01	ks_quality_p_value=1	major_base=C	major_cov=12/45	major_frequency=6.867e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.133e-01	polymorphism_score=25.1	prediction=polymorphism	ref_cov=12/45	total_cov=38/45
RA	286	.	NZ_CP009273	3199842	0	G	A	bias_e_value=2.23657	bias_p_value=4.82908e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.8	fisher_strand_p_value=2.61611e-08	frequency=2.759e-01	ks_quality_p_value=1	major_base=G	major_cov=20/43	major_frequency=7.241e-01	minor_base=A	minor_cov=23/1	new_cov=23/1	polymorphism_frequency=2.759e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=20/43	total_cov=43/44
RA	287	.	NZ_CP009273	3228321	0	T	G	bias_e_value=3.72488e-05	bias_p_value=8.04254e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.6	fisher_strand_p_value=2.68571e-13	frequency=2.368e-01	ks_quality_p_value=1	major_base=T	major_cov=5/53	major_frequency=7.632e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.368e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=5/53	total_cov=23/53
RA	288	.	NZ_CP009273	3263848	0	A	C	bias_e_value=9.3551	bias_p_value=2.0199e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.0	fisher_strand_p_value=1.19222e-07	frequency=2.222e-01	ks_quality_p_value=1	major_base=A	major_cov=11/38	major_frequency=7.778e-01	minor_base=C	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.222e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=11/38	total_cov=26/38
RA	289	.	NZ_CP009273	3268245	0	C	T	bias_e_value=0.713802	bias_p_value=1.5412e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.7	fisher_strand_p_value=7.83754e-09	frequency=2.584e-01	ks_quality_p_value=1	major_base=C	major_cov=23/43	major_frequency=7.416e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.584e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=23/43	total_cov=46/43
RA	290	.	NZ_CP009273	3279212	0	G	T	bias_e_value=0.0407999	bias_p_value=8.80928e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.7	fisher_strand_p_value=3.88615e-10	frequency=2.542e-01	ks_quality_p_value=1	major_base=G	major_cov=5/39	major_frequency=7.458e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.542e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=5/39	total_cov=20/39
RA	291	.	NZ_CP009273	3357755	0	A	T	bias_e_value=7.58537e-06	bias_p_value=1.63779e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.8	fisher_strand_p_value=5.18443e-14	frequency=2.895e-01	ks_quality_p_value=1	major_base=A	major_cov=48/6	major_frequency=7.105e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.895e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=48/6	total_cov=48/29
RA	292	.	NZ_CP009273	3381053	0	C	A	bias_e_value=0.0018975	bias_p_value=4.09696e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.6	fisher_strand_p_value=1.58376e-11	frequency=2.159e-01	ks_quality_p_value=1	major_base=C	major_cov=57/12	major_frequency=7.841e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.159e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=57/12	total_cov=57/31
RA	293	.	NZ_CP009273	3394811	0	G	A	bias_e_value=0.0459723	bias_p_value=9.92608e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=205.6	fisher_strand_p_value=4.40307e-10	frequency=2.211e-01	ks_quality_p_value=1	major_base=G	major_cov=54/20	major_frequency=7.789e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.211e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=54/20	total_cov=54/41
RA	294	.	NZ_CP009273	3394818	0	T	C	bias_e_value=2.81543e-11	bias_p_value=6.07891e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=181.1	fisher_strand_p_value=1.36802e-19	frequency=3.505e-01	ks_quality_p_value=1	major_base=T	major_cov=56/7	major_frequency=6.495e-01	minor_base=C	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.505e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=56/7	total_cov=56/41
RA	295	.	NZ_CP009273	3406207	0	G	T	bias_e_value=0.00520474	bias_p_value=1.12378e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=280.0	fisher_strand_p_value=4.52805e-11	frequency=2.273e-01	ks_quality_p_value=1	major_base=G	major_cov=54/14	major_frequency=7.727e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.273e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=54/14	total_cov=54/34
RA	296	.	NZ_CP009273	3406222	0	G	A	bias_e_value=1.04352e-06	bias_p_value=2.25311e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.2	fisher_strand_p_value=6.69831e-15	frequency=2.526e-01	ks_quality_p_value=1	major_base=G	major_cov=61/10	major_frequency=7.474e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.526e-01	polymorphism_score=19.1	prediction=polymorphism	ref_cov=61/10	total_cov=61/34
RA	297	.	NZ_CP009273	3406251	0	C	G	bias_e_value=0.00731482	bias_p_value=1.57937e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.0	fisher_strand_p_value=6.45606e-11	frequency=2.043e-01	ks_quality_p_value=1	major_base=C	major_cov=59/15	major_frequency=7.957e-01	minor_base=G	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.043e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=59/15	total_cov=59/34
RA	298	.	NZ_CP009273	3406257	0	C	T	bias_e_value=1.85815e-10	bias_p_value=4.01201e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.4	fisher_strand_p_value=9.43909e-19	frequency=2.889e-01	ks_quality_p_value=1	major_base=C	major_cov=60/4	major_frequency=7.111e-01	minor_base=T	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.889e-01	polymorphism_score=46.6	prediction=polymorphism	ref_cov=60/4	total_cov=60/32
RA	299	.	NZ_CP009273	3406260	0	G	T	bias_e_value=2.11008e-07	bias_p_value=4.55596e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.1	fisher_strand_p_value=1.3012e-15	frequency=2.609e-01	ks_quality_p_value=0.992357	major_base=G	major_cov=60/8	major_frequency=7.391e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.609e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=60/8	total_cov=60/32
RA	300	.	NZ_CP009273	3406265	0	T	A	bias_e_value=0.00149302	bias_p_value=3.22364e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.1	fisher_strand_p_value=1.23426e-11	frequency=2.326e-01	ks_quality_p_value=1	major_base=T	major_cov=54/12	major_frequency=7.674e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.326e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=54/12	total_cov=54/32
RA	301	.	NZ_CP009273	3406274	0	T	A	bias_e_value=0.0081511	bias_p_value=1.75994e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.5	fisher_strand_p_value=7.22752e-11	frequency=2.135e-01	ks_quality_p_value=1	major_base=T	major_cov=56/14	major_frequency=7.865e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.135e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=56/14	total_cov=56/33
RA	302	.	NZ_CP009273	3436636	0	A	C	bias_e_value=7.49893e-08	bias_p_value=1.61913e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.4	fisher_strand_p_value=4.45458e-16	frequency=2.933e-01	ks_quality_p_value=1	major_base=A	major_cov=50/3	major_frequency=7.067e-01	minor_base=C	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.933e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=50/3	total_cov=50/25
RA	303	.	NZ_CP009273	3458526	0	G	T	bias_e_value=0.113202	bias_p_value=2.4442e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=185.9	fisher_strand_p_value=1.13159e-09	frequency=2.083e-01	ks_quality_p_value=1	major_base=G	major_cov=9/48	major_frequency=7.917e-01	minor_base=T	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.083e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=9/48	total_cov=24/48
RA	304	.	NZ_CP009273	3485387	0	C	T	bias_e_value=0.00110829	bias_p_value=2.39295e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.5	fisher_strand_p_value=9.05469e-12	frequency=2.237e-01	ks_quality_p_value=1	major_base=C	major_cov=7/52	major_frequency=7.763e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.237e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=7/52	total_cov=25/52
RA	305	.	NZ_CP009273	3492989	0	T	A	bias_e_value=0.00178364	bias_p_value=3.85114e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=215.4	fisher_strand_p_value=1.48504e-11	frequency=2.660e-01	ks_quality_p_value=1	major_base=T	major_cov=18/51	major_frequency=7.340e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.660e-01	polymorphism_score=22.8	prediction=polymorphism	ref_cov=18/51	total_cov=43/51
RA	306	.	NZ_CP009273	3493010	0	G	T	bias_e_value=0.174849	bias_p_value=3.77523e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.6	fisher_strand_p_value=1.78552e-09	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=22/53	major_frequency=7.500e-01	minor_base=T	minor_cov=24/1	new_cov=24/1	polymorphism_frequency=2.500e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=22/53	total_cov=48/54
RA	307	.	NZ_CP009273	3493031	0	C	T	bias_e_value=0.31107	bias_p_value=6.71644e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=273.6	fisher_strand_p_value=3.27019e-09	frequency=2.136e-01	ks_quality_p_value=1	major_base=C	major_cov=27/54	major_frequency=7.864e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.136e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=27/54	total_cov=49/54
RA	308	.	NZ_CP009273	3562092	0	C	G	bias_e_value=5.94512	bias_p_value=1.28364e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.8	fisher_strand_p_value=7.76198e-08	frequency=2.088e-01	ks_quality_p_value=0.949141	major_base=C	major_cov=47/25	major_frequency=7.912e-01	minor_base=G	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.088e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=47/25	total_cov=47/44
RA	309	.	NZ_CP009273	3562103	0	G	T	bias_e_value=0.0835263	bias_p_value=1.80345e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=238.0	fisher_strand_p_value=8.22806e-10	frequency=2.414e-01	ks_quality_p_value=1	major_base=G	major_cov=48/18	major_frequency=7.586e-01	minor_base=T	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.414e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=48/18	total_cov=48/39
RA	310	.	NZ_CP009273	3562562	0	G	T	bias_e_value=0.0299799	bias_p_value=6.47309e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.9	fisher_strand_p_value=2.81553e-10	frequency=2.472e-01	ks_quality_p_value=1	major_base=G	major_cov=49/18	major_frequency=7.528e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.472e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=49/18	total_cov=49/40
RA	311	.	NZ_CP009273	3578375	0	T	A	bias_e_value=1.23202	bias_p_value=2.66012e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.8	fisher_strand_p_value=1.39355e-08	frequency=2.025e-01	ks_quality_p_value=1	major_base=T	major_cov=48/15	major_frequency=7.975e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.025e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=48/15	total_cov=48/31
RA	312	.	NZ_CP009273	3578404	0	C	A	bias_e_value=0.0621339	bias_p_value=1.34156e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.3	fisher_strand_p_value=6.21252e-10	frequency=2.133e-01	ks_quality_p_value=0.971488	major_base=C	major_cov=49/10	major_frequency=7.867e-01	minor_base=A	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.133e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=49/10	total_cov=49/26
RA	313	.	NZ_CP009273	3578446	0	A	C	bias_e_value=6.2261e-08	bias_p_value=1.3443e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.4	fisher_strand_p_value=3.67912e-16	frequency=3.333e-01	ks_quality_p_value=1	major_base=A	major_cov=45/3	major_frequency=6.667e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=3.333e-01	polymorphism_score=14.7	prediction=polymorphism	ref_cov=45/3	total_cov=45/27
RA	314	.	NZ_CP009273	3588404	0	T	A	bias_e_value=8.39033	bias_p_value=1.81159e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.4	fisher_strand_p_value=1.06202e-07	frequency=2.456e-01	ks_quality_p_value=1	major_base=T	major_cov=34/9	major_frequency=7.544e-01	minor_base=A	minor_cov=0/14	new_cov=0/14	polymorphism_frequency=2.456e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=34/9	total_cov=35/23
RA	315	.	NZ_CP009273	3594536	0	T	C	bias_e_value=6.79446e-06	bias_p_value=1.46702e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.6	fisher_strand_p_value=4.62721e-14	frequency=2.239e-01	ks_quality_p_value=1	major_base=T	major_cov=51/1	major_frequency=7.761e-01	minor_base=C	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=2.239e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=51/1	total_cov=51/16
RA	316	.	NZ_CP009273	3597095	0	A	C	bias_e_value=3.6318e-10	bias_p_value=7.84158e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.6	fisher_strand_p_value=1.87518e-18	frequency=2.955e-01	ks_quality_p_value=1	major_base=A	major_cov=58/4	major_frequency=7.045e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.955e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=58/4	total_cov=58/30
RA	317	.	NZ_CP009273	3619931	0	G	C	bias_e_value=0.00718554	bias_p_value=1.55146e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=209.6	fisher_strand_p_value=6.4339e-11	frequency=2.727e-01	ks_quality_p_value=0.984963	major_base=G	major_cov=17/47	major_frequency=7.273e-01	minor_base=C	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.727e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=17/47	total_cov=41/47
RA	318	.	NZ_CP009273	3619981	0	C	A	bias_e_value=2.06768	bias_p_value=4.46442e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=285.3	fisher_strand_p_value=2.42087e-08	frequency=2.121e-01	ks_quality_p_value=0.994576	major_base=C	major_cov=28/50	major_frequency=7.879e-01	minor_base=A	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.121e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=28/50	total_cov=49/50
RA	319	.	NZ_CP009273	3658984	0	G	A	bias_e_value=4.68938e-06	bias_p_value=1.0125e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.0	fisher_strand_p_value=3.15549e-14	frequency=2.358e-01	ks_quality_p_value=1	major_base=G	major_cov=66/15	major_frequency=7.642e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.358e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=66/15	total_cov=66/40
RA	320	.	NZ_CP009273	3659012	0	G	A	bias_e_value=4.01157e-07	bias_p_value=8.66155e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.0	fisher_strand_p_value=2.50176e-15	frequency=2.315e-01	ks_quality_p_value=1	major_base=G	major_cov=70/13	major_frequency=7.685e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.315e-01	polymorphism_score=15.3	prediction=polymorphism	ref_cov=70/13	total_cov=70/38
RA	321	.	NZ_CP009273	3659017	0	C	A	bias_e_value=4.97194e-09	bias_p_value=1.07351e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=292.5	fisher_strand_p_value=2.76095e-17	frequency=2.593e-01	ks_quality_p_value=0.993539	major_base=C	major_cov=69/11	major_frequency=7.407e-01	minor_base=A	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.593e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=69/11	total_cov=69/39
RA	322	.	NZ_CP009273	3659058	0	T	C	bias_e_value=8.1391e-10	bias_p_value=1.75735e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=248.3	fisher_strand_p_value=4.31386e-18	frequency=2.545e-01	ks_quality_p_value=0.993811	major_base=T	major_cov=72/10	major_frequency=7.455e-01	minor_base=C	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.545e-01	polymorphism_score=32.2	prediction=polymorphism	ref_cov=72/10	total_cov=72/39
RA	323	.	NZ_CP009273	3659062	0	C	A	bias_e_value=4.62787e-16	bias_p_value=9.99222e-23	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.3	fisher_strand_p_value=1.79467e-24	frequency=3.063e-01	ks_quality_p_value=1	major_base=C	major_cov=73/4	major_frequency=6.937e-01	minor_base=A	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.063e-01	polymorphism_score=32.3	prediction=polymorphism	ref_cov=73/4	total_cov=73/38
RA	324	.	NZ_CP009273	3725073	0	G	A	bias_e_value=0.00651759	bias_p_value=1.40724e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.1	fisher_strand_p_value=5.84963e-11	frequency=2.437e-01	ks_quality_p_value=0.978571	major_base=G	major_cov=58/32	major_frequency=7.563e-01	minor_base=A	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.437e-01	polymorphism_score=29.8	prediction=polymorphism	ref_cov=58/32	total_cov=58/61
RA	325	.	NZ_CP009273	3725084	0	G	A	bias_e_value=1.67162e-06	bias_p_value=3.60927e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=249.3	fisher_strand_p_value=1.08873e-14	frequency=2.991e-01	ks_quality_p_value=1	major_base=G	major_cov=59/23	major_frequency=7.009e-01	minor_base=A	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.991e-01	polymorphism_score=27.9	prediction=polymorphism	ref_cov=59/23	total_cov=59/58
RA	326	.	NZ_CP009273	3725094	0	G	A	bias_e_value=4.45701e-05	bias_p_value=9.62332e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.1	fisher_strand_p_value=3.23364e-13	frequency=2.727e-01	ks_quality_p_value=1	major_base=G	major_cov=58/22	major_frequency=7.273e-01	minor_base=A	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.727e-01	polymorphism_score=21.8	prediction=polymorphism	ref_cov=58/22	total_cov=58/53
RA	327	.	NZ_CP009273	3738869	0	A	T	bias_e_value=0.159895	bias_p_value=3.45236e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.3	fisher_strand_p_value=1.62561e-09	frequency=2.923e-01	ks_quality_p_value=1	major_base=A	major_cov=10/36	major_frequency=7.077e-01	minor_base=T	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.923e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=10/36	total_cov=30/36
RA	328	.	NZ_CP009273	3748723	0	A	C	bias_e_value=0.00017434	bias_p_value=3.76424e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=292.3	fisher_strand_p_value=1.3279e-12	frequency=2.261e-01	ks_quality_p_value=1	major_base=A	major_cov=66/23	major_frequency=7.739e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.261e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=66/23	total_cov=66/50
RA	329	.	NZ_CP009273	3751028	0	C	T	bias_e_value=0.922453	bias_p_value=1.99171e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.6	fisher_strand_p_value=1.02697e-08	frequency=2.212e-01	ks_quality_p_value=1	major_base=C	major_cov=52/29	major_frequency=7.788e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.212e-01	polymorphism_score=25.8	prediction=polymorphism	ref_cov=52/29	total_cov=52/53
RA	330	.	NZ_CP009273	3779872	0	T	G	bias_e_value=6.19683e-07	bias_p_value=1.33798e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.2	fisher_strand_p_value=3.91522e-15	frequency=3.571e-01	ks_quality_p_value=1	major_base=T	major_cov=9/45	major_frequency=6.429e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.571e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=9/45	total_cov=39/45
RA	331	.	NZ_CP009273	3779884	0	A	G	bias_e_value=3.72931	bias_p_value=8.05212e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.6	fisher_strand_p_value=4.49388e-08	frequency=2.169e-01	ks_quality_p_value=1	major_base=A	major_cov=20/45	major_frequency=7.831e-01	minor_base=G	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.169e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=20/45	total_cov=39/45
RA	332	.	NZ_CP009273	3779896	0	A	G	bias_e_value=0.000939041	bias_p_value=2.02752e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.7	fisher_strand_p_value=7.62228e-12	frequency=3.117e-01	ks_quality_p_value=1	major_base=A	major_cov=11/42	major_frequency=6.883e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.117e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=11/42	total_cov=35/42
RA	333	.	NZ_CP009273	3837579	0	T	G	bias_e_value=7.70783e-06	bias_p_value=1.66423e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.4	fisher_strand_p_value=5.27089e-14	frequency=3.048e-01	ks_quality_p_value=1	major_base=T	major_cov=19/54	major_frequency=6.952e-01	minor_base=G	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.048e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=19/54	total_cov=51/54
RA	334	.	NZ_CP009273	3857459	0	C	A	bias_e_value=0.27153	bias_p_value=5.86271e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.8	fisher_strand_p_value=2.94999e-09	frequency=2.639e-01	ks_quality_p_value=0.960951	major_base=C	major_cov=40/13	major_frequency=7.361e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.639e-01	polymorphism_score=12.7	prediction=polymorphism	ref_cov=40/13	total_cov=40/33
RA	335	.	NZ_CP009273	3924078	0	T	G	bias_e_value=7.07169e-06	bias_p_value=1.52688e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.7	fisher_strand_p_value=4.82229e-14	frequency=3.030e-01	ks_quality_p_value=1	major_base=T	major_cov=16/53	major_frequency=6.970e-01	minor_base=G	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=3.030e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=16/53	total_cov=49/53
RA	336	.	NZ_CP009273	3941210	0	C	T	bias_e_value=3.71154e-08	bias_p_value=8.01374e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.8	fisher_strand_p_value=2.16176e-16	frequency=2.651e-01	ks_quality_p_value=1	major_base=C	major_cov=4/57	major_frequency=7.349e-01	minor_base=T	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.651e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=4/57	total_cov=26/60
RA	337	.	NZ_CP009273	3964512	0	A	T	bias_e_value=0.560255	bias_p_value=1.20967e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.0	fisher_strand_p_value=6.07281e-09	frequency=2.169e-01	ks_quality_p_value=1	major_base=A	major_cov=17/48	major_frequency=7.831e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.169e-01	polymorphism_score=13.1	prediction=polymorphism	ref_cov=17/48	total_cov=35/48
RA	338	.	NZ_CP009273	3977444	0	G	T	bias_e_value=0.000429146	bias_p_value=9.26588e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.6	fisher_strand_p_value=3.38009e-12	frequency=2.376e-01	ks_quality_p_value=1	major_base=G	major_cov=59/18	major_frequency=7.624e-01	minor_base=T	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.376e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=59/18	total_cov=59/42
RA	339	.	NZ_CP009273	3977450	0	T	C	bias_e_value=1.86993e-05	bias_p_value=4.03745e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.5	fisher_strand_p_value=1.31692e-13	frequency=2.549e-01	ks_quality_p_value=1	major_base=T	major_cov=60/16	major_frequency=7.451e-01	minor_base=C	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.549e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=60/16	total_cov=60/42
RA	340	.	NZ_CP009273	3997489	0	T	A	bias_e_value=0.0031293	bias_p_value=6.75661e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.0	fisher_strand_p_value=2.66554e-11	frequency=2.115e-01	ks_quality_p_value=1	major_base=T	major_cov=20/62	major_frequency=7.885e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.115e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=20/62	total_cov=42/62
RA	341	.	NZ_CP009273	3997492	0	G	A	bias_e_value=1.75719e-08	bias_p_value=3.79402e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.4	fisher_strand_p_value=1.00268e-16	frequency=2.703e-01	ks_quality_p_value=1	major_base=G	major_cov=14/67	major_frequency=7.297e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.703e-01	polymorphism_score=34.4	prediction=polymorphism	ref_cov=14/67	total_cov=44/67
RA	342	.	NZ_CP009273	4009331	0	C	A	bias_e_value=11.2135	bias_p_value=2.42116e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=252.2	fisher_strand_p_value=1.4455e-07	frequency=2.222e-01	ks_quality_p_value=1	major_base=C	major_cov=44/26	major_frequency=7.778e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.222e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=44/26	total_cov=44/46
RA	343	.	NZ_CP009273	4009375	0	C	T	bias_e_value=35.3194	bias_p_value=7.62595e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.3	fisher_strand_p_value=4.91157e-07	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=37/23	major_frequency=7.500e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.500e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=37/23	total_cov=37/43
RA	344	.	NZ_CP009273	4009411	0	T	C	bias_e_value=0.000855011	bias_p_value=1.84609e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.9	fisher_strand_p_value=6.91488e-12	frequency=3.253e-01	ks_quality_p_value=1	major_base=T	major_cov=42/14	major_frequency=6.747e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.253e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=42/14	total_cov=42/41
RA	345	.	NZ_CP009273	4026091	0	T	G	bias_e_value=0.0610962	bias_p_value=1.31915e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=191.6	fisher_strand_p_value=5.92989e-10	frequency=3.023e-01	ks_quality_p_value=1	major_base=T	major_cov=13/47	major_frequency=6.977e-01	minor_base=G	minor_cov=24/2	new_cov=24/2	polymorphism_frequency=3.023e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=13/47	total_cov=37/49
RA	346	.	NZ_CP009273	4036353	0	C	T	bias_e_value=26963.6	bias_p_value=0.00582184	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.7	fisher_strand_p_value=0.000705059	frequency=5.000e-01	ks_quality_p_value=1	major_base=C	major_cov=17/10	major_frequency=5.000e-01	minor_base=T	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=5.000e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=17/10	total_cov=46/10
RA	347	.	NZ_CP009273	4036390	0	A	G	bias_e_value=31464.1	bias_p_value=0.00679356	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.2	fisher_strand_p_value=0.000840648	frequency=4.717e-01	ks_quality_p_value=1	major_base=A	major_cov=18/10	major_frequency=5.283e-01	minor_base=G	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=4.717e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=18/10	total_cov=43/10
RA	348	.	NZ_CP009273	4049475	0	A	C	bias_e_value=0.000351145	bias_p_value=7.58171e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.7	fisher_strand_p_value=2.74488e-12	frequency=3.506e-01	ks_quality_p_value=1	major_base=A	major_cov=39/11	major_frequency=6.494e-01	minor_base=C	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=3.506e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=39/11	total_cov=39/40
RA	349	.	NZ_CP009273	4058940	0	T	A	bias_e_value=0.00307118	bias_p_value=6.63112e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.1	fisher_strand_p_value=2.61402e-11	frequency=2.958e-01	ks_quality_p_value=1	major_base=T	major_cov=41/9	major_frequency=7.042e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.958e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=41/9	total_cov=41/30
RA	350	.	NZ_CP009273	4088083	0	A	C	bias_e_value=1.10564	bias_p_value=2.38723e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.6	fisher_strand_p_value=1.24315e-08	frequency=2.927e-01	ks_quality_p_value=1	major_base=A	major_cov=37/21	major_frequency=7.073e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.927e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=37/21	total_cov=37/46
RA	351	.	NZ_CP009273	4123168	0	C	T	bias_e_value=0.0176777	bias_p_value=3.81687e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.6	fisher_strand_p_value=1.62126e-10	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=13/47	major_frequency=7.500e-01	minor_base=T	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.500e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=13/47	total_cov=33/47
RA	352	.	NZ_CP009273	4123179	0	G	T	bias_e_value=0.00183076	bias_p_value=3.95287e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.7	fisher_strand_p_value=1.52586e-11	frequency=2.763e-01	ks_quality_p_value=1	major_base=G	major_cov=10/45	major_frequency=7.237e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.763e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=10/45	total_cov=33/45
RA	353	.	NZ_CP009273	4123198	0	C	A	bias_e_value=1.42099	bias_p_value=3.06811e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=257.2	fisher_strand_p_value=1.62006e-08	frequency=2.235e-01	ks_quality_p_value=1	major_base=C	major_cov=20/46	major_frequency=7.765e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.235e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=20/46	total_cov=39/46
RA	354	.	NZ_CP009273	4151070	0	C	A	bias_e_value=1.83754e-05	bias_p_value=3.96751e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.2	fisher_strand_p_value=1.29334e-13	frequency=2.697e-01	ks_quality_p_value=1	major_base=C	major_cov=54/11	major_frequency=7.303e-01	minor_base=A	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=2.697e-01	polymorphism_score=23.0	prediction=polymorphism	ref_cov=54/11	total_cov=54/35
RA	355	.	NZ_CP009273	4151076	0	G	A	bias_e_value=7.59969e-07	bias_p_value=1.64088e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.1	fisher_strand_p_value=4.83129e-15	frequency=2.955e-01	ks_quality_p_value=1	major_base=G	major_cov=53/9	major_frequency=7.045e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.955e-01	polymorphism_score=22.2	prediction=polymorphism	ref_cov=53/9	total_cov=54/35
RA	356	.	NZ_CP009273	4195549	0	G	T	bias_e_value=0.036203	bias_p_value=7.81674e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.7	fisher_strand_p_value=3.52478e-10	frequency=2.195e-01	ks_quality_p_value=0.972934	major_base=G	major_cov=13/51	major_frequency=7.805e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.195e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=13/51	total_cov=31/51
RA	357	.	NZ_CP009273	4217335	0	C	A	bias_e_value=0.284724	bias_p_value=6.1476e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.3	fisher_strand_p_value=2.97973e-09	frequency=2.632e-01	ks_quality_p_value=1	major_base=C	major_cov=41/15	major_frequency=7.368e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.632e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=41/15	total_cov=41/35
RA	358	.	NZ_CP009273	4232143	0	T	G	bias_e_value=0.00785281	bias_p_value=1.69553e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.7	fisher_strand_p_value=6.95193e-11	frequency=2.308e-01	ks_quality_p_value=1	major_base=T	major_cov=23/57	major_frequency=7.692e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.308e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=23/57	total_cov=47/57
RA	359	.	NZ_CP009273	4245997	0	G	C	bias_e_value=1.91713	bias_p_value=4.13935e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.6	fisher_strand_p_value=2.22284e-08	frequency=2.632e-01	ks_quality_p_value=1	major_base=G	major_cov=8/34	major_frequency=7.368e-01	minor_base=C	minor_cov=15/0	new_cov=15/0	polymorphism_frequency=2.632e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=8/34	total_cov=23/34
RA	360	.	NZ_CP009273	4265885	0	A	G	bias_e_value=1.66646	bias_p_value=3.59812e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.0	fisher_strand_p_value=1.91696e-08	frequency=2.353e-01	ks_quality_p_value=1	major_base=A	major_cov=21/44	major_frequency=7.647e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.353e-01	polymorphism_score=17.4	prediction=polymorphism	ref_cov=21/44	total_cov=45/44
RA	361	.	NZ_CP009273	4265953	0	C	T	bias_e_value=489.136	bias_p_value=0.000105612	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.0	fisher_strand_p_value=8.31775e-06	frequency=2.025e-01	ks_quality_p_value=1	major_base=C	major_cov=26/37	major_frequency=7.975e-01	minor_base=T	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.025e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=26/37	total_cov=43/37
RA	362	.	NZ_CP009273	4277638	0	G	A	bias_e_value=0.00123841	bias_p_value=2.6739e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=188.1	fisher_strand_p_value=1.01622e-11	frequency=2.317e-01	ks_quality_p_value=1	major_base=G	major_cov=53/10	major_frequency=7.683e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.317e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=53/10	total_cov=53/29
RA	363	.	NZ_CP009273	4277647	0	T	A	bias_e_value=0.00155087	bias_p_value=3.34855e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.4	fisher_strand_p_value=1.28403e-11	frequency=2.235e-01	ks_quality_p_value=1	major_base=T	major_cov=55/11	major_frequency=7.765e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.235e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=55/11	total_cov=55/30
RA	364	.	NZ_CP009273	4292475	0	T	G	bias_e_value=0.000104946	bias_p_value=2.26594e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.5	fisher_strand_p_value=7.84786e-13	frequency=2.692e-01	ks_quality_p_value=1	major_base=T	major_cov=8/49	major_frequency=7.308e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.692e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=8/49	total_cov=30/49
RA	365	.	NZ_CP009273	4326718	0	T	A	bias_e_value=0.50184	bias_p_value=1.08354e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.5	fisher_strand_p_value=5.40816e-09	frequency=2.439e-01	ks_quality_p_value=1	major_base=T	major_cov=44/18	major_frequency=7.561e-01	minor_base=A	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.439e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=44/18	total_cov=44/38
RA	366	.	NZ_CP009273	4332050	0	A	G	bias_e_value=0.0786541	bias_p_value=1.69825e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.6	fisher_strand_p_value=7.72591e-10	frequency=2.065e-01	ks_quality_p_value=1	major_base=A	major_cov=18/55	major_frequency=7.935e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.065e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=18/55	total_cov=38/55
RA	367	.	NZ_CP009273	4333713	0	A	G	bias_e_value=0.00192573	bias_p_value=4.15793e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.2	fisher_strand_p_value=1.60828e-11	frequency=2.353e-01	ks_quality_p_value=1	major_base=A	major_cov=12/53	major_frequency=7.647e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.353e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=12/53	total_cov=32/53
RA	368	.	NZ_CP009273	4341535	0	C	T	bias_e_value=0.0516738	bias_p_value=1.11571e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=211.0	fisher_strand_p_value=4.97614e-10	frequency=2.692e-01	ks_quality_p_value=1	major_base=C	major_cov=28/48	major_frequency=7.308e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.692e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=28/48	total_cov=57/48
RA	369	.	NZ_CP009273	4341568	0	A	G	bias_e_value=0.786557	bias_p_value=1.69829e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=247.8	fisher_strand_p_value=8.68154e-09	frequency=2.286e-01	ks_quality_p_value=1	major_base=A	major_cov=31/50	major_frequency=7.714e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.286e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=31/50	total_cov=55/50
RA	370	.	NZ_CP009273	4351348	0	T	G	bias_e_value=3.83409e-05	bias_p_value=8.27834e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=210.0	fisher_strand_p_value=2.76722e-13	frequency=2.981e-01	ks_quality_p_value=1	major_base=T	major_cov=53/20	major_frequency=7.019e-01	minor_base=G	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.981e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=53/20	total_cov=53/51
RA	371	.	NZ_CP009273	4359393	0	G	A	bias_e_value=5.5006	bias_p_value=1.18766e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.8	fisher_strand_p_value=6.78427e-08	frequency=2.051e-01	ks_quality_p_value=1	major_base=G	major_cov=17/45	major_frequency=7.949e-01	minor_base=A	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.051e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=17/45	total_cov=33/45
RA	372	.	NZ_CP009273	4411039	0	A	T	bias_e_value=0.284724	bias_p_value=6.1476e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.9	fisher_strand_p_value=2.97973e-09	frequency=2.632e-01	ks_quality_p_value=1	major_base=A	major_cov=41/15	major_frequency=7.368e-01	minor_base=T	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.632e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=41/15	total_cov=44/35
RA	373	.	NZ_CP009273	4419807	0	A	T	bias_e_value=0.000297049	bias_p_value=6.4137e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=213.1	fisher_strand_p_value=2.30751e-12	frequency=2.581e-01	ks_quality_p_value=1	major_base=A	major_cov=15/54	major_frequency=7.419e-01	minor_base=T	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.581e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=15/54	total_cov=39/54
RA	374	.	NZ_CP009273	4431963	0	A	G	bias_e_value=0.000529969	bias_p_value=1.14428e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.7	fisher_strand_p_value=4.20782e-12	frequency=2.637e-01	ks_quality_p_value=1	major_base=A	major_cov=15/52	major_frequency=7.363e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.637e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=15/52	total_cov=39/52
RA	375	.	NZ_CP009273	4431979	0	A	T	bias_e_value=0.000101507	bias_p_value=2.19167e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.0	fisher_strand_p_value=7.58158e-13	frequency=2.551e-01	ks_quality_p_value=1	major_base=A	major_cov=16/57	major_frequency=7.449e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.551e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=16/57	total_cov=41/57
RA	376	.	NZ_CP009273	4446922	0	A	G	bias_e_value=4.6758e-09	bias_p_value=1.00957e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.9	fisher_strand_p_value=2.57558e-17	frequency=3.038e-01	ks_quality_p_value=1	major_base=A	major_cov=3/52	major_frequency=6.962e-01	minor_base=G	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=3.038e-01	polymorphism_score=22.5	prediction=polymorphism	ref_cov=3/52	total_cov=27/52
RA	377	.	NZ_CP009273	4455617	0	C	A	bias_e_value=0.000689599	bias_p_value=1.48894e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.6	fisher_strand_p_value=5.58621e-12	frequency=2.639e-01	ks_quality_p_value=0.990091	major_base=C	major_cov=46/7	major_frequency=7.361e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.639e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=46/7	total_cov=46/26
RA	378	.	NZ_CP009273	4511223	0	A	T	bias_e_value=0.0914321	bias_p_value=1.97415e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.7	fisher_strand_p_value=9.04597e-10	frequency=2.400e-01	ks_quality_p_value=1	major_base=A	major_cov=12/45	major_frequency=7.600e-01	minor_base=T	minor_cov=18/0	new_cov=18/0	polymorphism_frequency=2.400e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=12/45	total_cov=30/45
RA	379	.	NZ_CP009273	4526014	0	A	T	bias_e_value=5.24197e-12	bias_p_value=1.13182e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.9	fisher_strand_p_value=2.45222e-20	frequency=3.556e-01	ks_quality_p_value=1	major_base=A	major_cov=4/54	major_frequency=6.444e-01	minor_base=T	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=3.556e-01	polymorphism_score=75.8	prediction=polymorphism	ref_cov=4/54	total_cov=36/54
RA	380	.	NZ_CP009273	4526024	0	G	A	bias_e_value=1.63034	bias_p_value=3.52015e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.2	fisher_strand_p_value=1.87311e-08	frequency=2.169e-01	ks_quality_p_value=1	major_base=G	major_cov=14/51	major_frequency=7.831e-01	minor_base=A	minor_cov=17/1	new_cov=17/1	polymorphism_frequency=2.169e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=14/51	total_cov=31/52
RA	381	.	NZ_CP009273	4526029	0	T	A	bias_e_value=9.92518e-07	bias_p_value=2.14299e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.3	fisher_strand_p_value=6.36117e-15	frequency=2.941e-01	ks_quality_p_value=1	major_base=T	major_cov=8/52	major_frequency=7.059e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.941e-01	polymorphism_score=20.4	prediction=polymorphism	ref_cov=8/52	total_cov=33/53
RA	382	.	NZ_CP009273	4526038	0	T	A	bias_e_value=81.4652	bias_p_value=1.75895e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.1	fisher_strand_p_value=1.20218e-06	frequency=2.683e-01	ks_quality_p_value=1	major_base=T	major_cov=15/45	major_frequency=7.317e-01	minor_base=A	minor_cov=19/3	new_cov=19/3	polymorphism_frequency=2.683e-01	polymorphism_score=16.8	prediction=polymorphism	ref_cov=15/45	total_cov=34/48
RA	383	.	NZ_CP009273	4526060	0	C	T	bias_e_value=0.0574518	bias_p_value=1.24047e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.1	fisher_strand_p_value=5.56008e-10	frequency=2.614e-01	ks_quality_p_value=1	major_base=C	major_cov=15/50	major_frequency=7.386e-01	minor_base=T	minor_cov=22/1	new_cov=22/1	polymorphism_frequency=2.614e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=15/50	total_cov=37/51
RA	384	.	NZ_CP009273	4526064	0	G	T	bias_e_value=0.0643849	bias_p_value=1.39016e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.8	fisher_strand_p_value=6.26455e-10	frequency=2.386e-01	ks_quality_p_value=1	major_base=G	major_cov=18/49	major_frequency=7.614e-01	minor_base=T	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.386e-01	polymorphism_score=31.8	prediction=polymorphism	ref_cov=18/49	total_cov=39/52
RA	385	.	NZ_CP009273	4527926	0	A	C	bias_e_value=3.0406e-07	bias_p_value=6.56509e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=218.5	fisher_strand_p_value=1.88073e-15	frequency=2.738e-01	ks_quality_p_value=1	major_base=A	major_cov=55/6	major_frequency=7.262e-01	minor_base=C	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.738e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=55/6	total_cov=55/29
RA	386	.	NZ_CP009273	4527934	0	T	C	bias_e_value=0.00492673	bias_p_value=1.06375e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.9	fisher_strand_p_value=4.27633e-11	frequency=2.051e-01	ks_quality_p_value=1	major_base=T	major_cov=54/8	major_frequency=7.949e-01	minor_base=C	minor_cov=0/16	new_cov=0/16	polymorphism_frequency=2.051e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=54/8	total_cov=54/27
RA	387	.	NZ_CP009273	4538818	0	G	T	bias_e_value=130.419	bias_p_value=2.81594e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.4	fisher_strand_p_value=2.00914e-06	frequency=2.267e-01	ks_quality_p_value=0.992214	major_base=G	major_cov=22/36	major_frequency=7.733e-01	minor_base=T	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.267e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=22/36	total_cov=40/36
RA	388	.	NZ_CP009273	4551032	0	G	A	bias_e_value=0.0246831	bias_p_value=5.32943e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.7	fisher_strand_p_value=2.29777e-10	frequency=2.816e-01	ks_quality_p_value=1	major_base=G	major_cov=47/27	major_frequency=7.184e-01	minor_base=A	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.816e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=47/27	total_cov=47/56
RA	389	.	NZ_CP009273	4558329	0	C	A	bias_e_value=4.88754e-05	bias_p_value=1.05529e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.5	fisher_strand_p_value=3.55741e-13	frequency=2.621e-01	ks_quality_p_value=1	major_base=C	major_cov=18/58	major_frequency=7.379e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.621e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=18/58	total_cov=45/58
RA	390	.	NZ_CP009273	4558343	0	C	A	bias_e_value=0.00120423	bias_p_value=2.6001e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.0	fisher_strand_p_value=9.87075e-12	frequency=2.330e-01	ks_quality_p_value=1	major_base=C	major_cov=20/59	major_frequency=7.670e-01	minor_base=A	minor_cov=24/0	new_cov=24/0	polymorphism_frequency=2.330e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=20/59	total_cov=44/59
RA	391	.	NZ_CP009273	4562509	0	T	A	bias_e_value=30.0272	bias_p_value=6.4833e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=217.8	fisher_strand_p_value=4.12951e-07	frequency=2.184e-01	ks_quality_p_value=1	major_base=T	major_cov=42/26	major_frequency=7.816e-01	minor_base=A	minor_cov=0/19	new_cov=0/19	polymorphism_frequency=2.184e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=42/26	total_cov=42/46
RA	392	.	NZ_CP009273	4563313	0	A	G	bias_e_value=9.39865e-07	bias_p_value=2.0293e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=167.3	fisher_strand_p_value=6.01369e-15	frequency=2.800e-01	ks_quality_p_value=1	major_base=A	major_cov=4/50	major_frequency=7.200e-01	minor_base=G	minor_cov=21/0	new_cov=21/0	polymorphism_frequency=2.800e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=4/50	total_cov=26/50
RA	393	.	NZ_CP009273	4563317	0	A	G	bias_e_value=1.21841e-06	bias_p_value=2.63072e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.3	fisher_strand_p_value=7.85823e-15	frequency=2.817e-01	ks_quality_p_value=1	major_base=A	major_cov=3/48	major_frequency=7.183e-01	minor_base=G	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.817e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=3/48	total_cov=24/48
RA	394	.	NZ_CP009273	4563329	0	A	G	bias_e_value=4.95675e-05	bias_p_value=1.07023e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.1	fisher_strand_p_value=3.60955e-13	frequency=2.639e-01	ks_quality_p_value=1	major_base=A	major_cov=5/48	major_frequency=7.361e-01	minor_base=G	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.639e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=5/48	total_cov=24/48
RA	395	.	NZ_CP009273	4570447	0	A	T	bias_e_value=1.91889e-06	bias_p_value=4.14315e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=256.5	fisher_strand_p_value=1.25516e-14	frequency=2.642e-01	ks_quality_p_value=1	major_base=A	major_cov=16/62	major_frequency=7.358e-01	minor_base=T	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.642e-01	polymorphism_score=24.0	prediction=polymorphism	ref_cov=16/62	total_cov=44/62
RA	396	.	NZ_CP009273	4570451	0	C	T	bias_e_value=2.85028e-13	bias_p_value=6.15415e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.2	fisher_strand_p_value=1.25265e-21	frequency=3.396e-01	ks_quality_p_value=1	major_base=C	major_cov=7/63	major_frequency=6.604e-01	minor_base=T	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=3.396e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=7/63	total_cov=44/63
RA	397	.	NZ_CP009273	4570457	0	C	T	bias_e_value=1.71527e-10	bias_p_value=3.7035e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=244.9	fisher_strand_p_value=8.69649e-19	frequency=3.028e-01	ks_quality_p_value=1	major_base=C	major_cov=11/65	major_frequency=6.972e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.028e-01	polymorphism_score=22.4	prediction=polymorphism	ref_cov=11/65	total_cov=44/65
RA	398	.	NZ_CP009273	4570459	0	G	T	bias_e_value=3.36376e-07	bias_p_value=7.26283e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.4	fisher_strand_p_value=2.08683e-15	frequency=2.636e-01	ks_quality_p_value=1	major_base=G	major_cov=16/65	major_frequency=7.364e-01	minor_base=T	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=2.636e-01	polymorphism_score=28.5	prediction=polymorphism	ref_cov=16/65	total_cov=45/65
RA	399	.	NZ_CP009273	4570473	0	C	A	bias_e_value=3.53928e-06	bias_p_value=7.6418e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=373.1	fisher_strand_p_value=2.37189e-14	frequency=2.269e-01	ks_quality_p_value=0.99508	major_base=C	major_cov=20/72	major_frequency=7.731e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.269e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=20/72	total_cov=47/72
RA	400	.	NZ_CP009273	4570487	0	G	T	bias_e_value=4.19825e-10	bias_p_value=9.06462e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=328.9	fisher_strand_p_value=2.17537e-18	frequency=2.727e-01	ks_quality_p_value=1	major_base=G	major_cov=15/73	major_frequency=7.273e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=2.727e-01	polymorphism_score=34.1	prediction=polymorphism	ref_cov=15/73	total_cov=48/73
RA	401	.	NZ_CP009273	4570490	0	C	T	bias_e_value=1.50251e-05	bias_p_value=3.24413e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=326.7	fisher_strand_p_value=1.05041e-13	frequency=2.185e-01	ks_quality_p_value=1	major_base=C	major_cov=21/72	major_frequency=7.815e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.185e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=21/72	total_cov=48/72
RA	402	.	NZ_CP009273	4594161	0	C	T	bias_e_value=5.72766e-08	bias_p_value=1.23668e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.8	fisher_strand_p_value=3.37666e-16	frequency=3.977e-01	ks_quality_p_value=1	major_base=C	major_cov=9/44	major_frequency=6.023e-01	minor_base=T	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.977e-01	polymorphism_score=42.9	prediction=polymorphism	ref_cov=9/44	total_cov=45/44
RA	403	.	NZ_CP009273	4594167	0	C	T	bias_e_value=1.4073e-06	bias_p_value=3.03857e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=124.8	fisher_strand_p_value=9.11698e-15	frequency=3.750e-01	ks_quality_p_value=1	major_base=C	major_cov=11/44	major_frequency=6.250e-01	minor_base=T	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.750e-01	polymorphism_score=34.2	prediction=polymorphism	ref_cov=11/44	total_cov=45/44
RA	404	.	NZ_CP009273	4612067	0	A	G	bias_e_value=2.17732e-12	bias_p_value=4.70114e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.9	fisher_strand_p_value=9.99126e-21	frequency=2.828e-01	ks_quality_p_value=1	major_base=A	major_cov=4/67	major_frequency=7.172e-01	minor_base=G	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.828e-01	polymorphism_score=24.2	prediction=polymorphism	ref_cov=4/67	total_cov=32/67
RA	405	.	NZ_CP009273	4618448	0	T	A	bias_e_value=0.0134704	bias_p_value=2.90846e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.7	fisher_strand_p_value=1.22069e-10	frequency=2.763e-01	ks_quality_p_value=1	major_base=T	major_cov=43/12	major_frequency=7.237e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.763e-01	polymorphism_score=16.4	prediction=polymorphism	ref_cov=43/12	total_cov=43/33
RA	406	.	NZ_CP009273	4618460	0	G	A	bias_e_value=0.000415367	bias_p_value=8.96836e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=136.1	fisher_strand_p_value=3.26752e-12	frequency=3.056e-01	ks_quality_p_value=1	major_base=G	major_cov=42/8	major_frequency=6.944e-01	minor_base=A	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=3.056e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=42/8	total_cov=42/30
RA	407	.	NZ_CP009273	4618466	0	A	C	bias_e_value=2.38337e-05	bias_p_value=5.14603e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.9	fisher_strand_p_value=1.69236e-13	frequency=3.429e-01	ks_quality_p_value=1	major_base=A	major_cov=40/6	major_frequency=6.571e-01	minor_base=C	minor_cov=0/24	new_cov=0/24	polymorphism_frequency=3.429e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=40/6	total_cov=40/30
JC	408	.	NZ_CP009273	1	1	NZ_CP009273	4631469	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=52	coverage_plus=51	flanking_left=250	flanking_right=250	frequency=1	junction_possible_overlap_registers=248	key=NZ_CP009273__1__1__NZ_CP009273__4631469__-1__0____250__250__0__0	max_left=248	max_left_minus=244	max_left_plus=248	max_min_left=124	max_min_left_minus=124	max_min_left_plus=116	max_min_right=123	max_min_right_minus=123	max_min_right_plus=108	max_pos_hash_score=496	max_right=247	max_right_minus=245	max_right_plus=247	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.02	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=92	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=248	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=248	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103
JC	409	.	NZ_CP009273	360104	1	NZ_CP009273	360286	-1	0	alignment_overlap=0	coverage_minus=63	coverage_plus=2	flanking_left=250	flanking_right=250	frequency=4.964e-01	junction_possible_overlap_registers=248	key=NZ_CP009273__360104__1__NZ_CP009273__360286__-1__0____250__250__0__0	max_left=245	max_left_minus=245	max_left_plus=116	max_min_left=124	max_min_left_minus=124	max_min_left_plus=116	max_min_right=123	max_min_right_minus=123	max_min_right_plus=0	max_pos_hash_score=496	max_right=247	max_right_minus=247	max_right_plus=151	neg_log10_pos_hash_p_value=1.7	new_junction_coverage=0.67	new_junction_read_count=68	polymorphism_frequency=4.964e-01	pos_hash_score=60	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=0	side_1_possible_overlap_registers=248	side_1_read_count=65	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=248	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=65
JC	410	.	NZ_CP009273	1203246	1	NZ_CP009273	1205075	1	0	alignment_overlap=16	coverage_minus=25	coverage_plus=41	flanking_left=250	flanking_right=250	frequency=6.835e-01	junction_possible_overlap_registers=232	key=NZ_CP009273__1203246__1__NZ_CP009273__1205059__1__16____250__250__0__0	max_left=232	max_left_minus=232	max_left_plus=223	max_min_left=113	max_min_left_minus=112	max_min_left_plus=113	max_min_right=112	max_min_right_minus=109	max_min_right_plus=112	max_pos_hash_score=464	max_right=232	max_right_minus=226	max_right_plus=232	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.70	new_junction_read_count=66	polymorphism_frequency=6.835e-01	pos_hash_score=61	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.29	side_1_overlap=16	side_1_possible_overlap_registers=248	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=232	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=66
JC	411	.	NZ_CP009273	1203261	-1	NZ_CP009273	1205058	-1	0	alignment_overlap=16	coverage_minus=35	coverage_plus=33	flanking_left=250	flanking_right=250	frequency=6.930e-01	junction_possible_overlap_registers=232	key=NZ_CP009273__1203261__-1__NZ_CP009273__1205074__-1__16____250__250__0__0	max_left=233	max_left_minus=220	max_left_plus=233	max_min_left=116	max_min_left_minus=116	max_min_left_plus=115	max_min_right=115	max_min_right_minus=92	max_min_right_plus=115	max_pos_hash_score=464	max_right=229	max_right_minus=229	max_right_plus=227	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.73	new_junction_read_count=69	polymorphism_frequency=6.930e-01	pos_hash_score=65	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.29	side_1_overlap=16	side_1_possible_overlap_registers=248	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=232	side_2_read_count=34	side_2_redundant=0	total_non_overlap_reads=68
JC	412	.	NZ_CP009273	3541908	-1	NZ_CP009273	3541932	1	-23	alignment_overlap=-23	coverage_minus=0	coverage_plus=9	flanking_left=250	flanking_right=250	frequency=1.126e-01	junction_possible_overlap_registers=225	key=NZ_CP009273__3541908__-1__NZ_CP009273__3541932__1__-23__ATTTTTTTTAATGATACGGCGAC__250__250__0__0	max_left=203	max_left_minus=0	max_left_plus=203	max_min_left=90	max_min_left_minus=0	max_min_left_plus=90	max_min_right=113	max_min_right_minus=0	max_min_right_plus=113	max_pos_hash_score=448	max_right=194	max_right_minus=0	max_right_plus=194	neg_log10_pos_hash_p_value=13.0	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=1.126e-01	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=1	side_1_coverage=0.74	side_1_overlap=0	side_1_possible_overlap_registers=247	side_1_read_count=75	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=248	side_2_read_count=81	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=ATTTTTTTTAATGATACGGCGAC
JC	413	.	NZ_CP009273	4532499	1	NZ_CP009273	4532813	1	0	alignment_overlap=9	coverage_minus=4	coverage_plus=1	flanking_left=250	flanking_right=250	frequency=4.091e-02	junction_possible_overlap_registers=239	key=NZ_CP009273__4532499__1__NZ_CP009273__4532804__1__9____250__250__0__0	max_left=210	max_left_minus=210	max_left_plus=126	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=115	max_min_right_minus=86	max_min_right_plus=115	max_pos_hash_score=478	max_right=115	max_right_minus=86	max_right_plus=115	neg_log10_pos_hash_p_value=16.3	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=4.091e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.23	side_1_overlap=9	side_1_possible_overlap_registers=248	side_1_read_count=125	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.17	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=5
UN	414	.	NZ_CP009273	15616	16497
UN	415	.	NZ_CP009273	20027	20322
UN	416	.	NZ_CP009273	220457	221029
UN	417	.	NZ_CP009273	221612	221832
UN	418	.	NZ_CP009273	223683	223683
UN	419	.	NZ_CP009273	223687	223688
UN	420	.	NZ_CP009273	223690	223690
UN	421	.	NZ_CP009273	223692	224929
UN	422	.	NZ_CP009273	224932	224932
UN	423	.	NZ_CP009273	266484	266768
UN	424	.	NZ_CP009273	269889	269889
UN	425	.	NZ_CP009273	269891	270627
UN	426	.	NZ_CP009273	275114	275114
UN	427	.	NZ_CP009273	275117	275414
UN	428	.	NZ_CP009273	286554	286874
UN	429	.	NZ_CP009273	311183	311960
UN	430	.	NZ_CP009273	353601	353601
UN	431	.	NZ_CP009273	366225	366973
UN	432	.	NZ_CP009273	376947	377823
UN	433	.	NZ_CP009273	387399	388192
UN	434	.	NZ_CP009273	521556	521557
UN	435	.	NZ_CP009273	521559	521943
UN	436	.	NZ_CP009273	562450	563256
UN	437	.	NZ_CP009273	570275	571009
UN	438	.	NZ_CP009273	603696	603696
UN	439	.	NZ_CP009273	603699	604565
UN	440	.	NZ_CP009273	683535	684270
UN	441	.	NZ_CP009273	1089925	1090719
UN	442	.	NZ_CP009273	1390536	1391268
UN	443	.	NZ_CP009273	1427151	1427151
UN	444	.	NZ_CP009273	1427154	1427221
UN	445	.	NZ_CP009273	1462397	1463266
UN	446	.	NZ_CP009273	1463785	1464542
UN	447	.	NZ_CP009273	1522807	1522807
UN	448	.	NZ_CP009273	1522810	1523203
UN	449	.	NZ_CP009273	1565343	1565359
UN	450	.	NZ_CP009273	1565361	1565362
UN	451	.	NZ_CP009273	1628576	1628576
UN	452	.	NZ_CP009273	1628578	1628578
UN	453	.	NZ_CP009273	1628580	1628580
UN	454	.	NZ_CP009273	1628582	1628668
UN	455	.	NZ_CP009273	1628670	1628672
UN	456	.	NZ_CP009273	1645333	1645574
UN	457	.	NZ_CP009273	2060444	2060445
UN	458	.	NZ_CP009273	2060447	2060574
UN	459	.	NZ_CP009273	2062649	2063524
UN	460	.	NZ_CP009273	2063526	2063526
UN	461	.	NZ_CP009273	2095461	2096189
UN	462	.	NZ_CP009273	2163877	2164675
UN	463	.	NZ_CP009273	2282635	2283357
UN	464	.	NZ_CP009273	2507980	2508866
UN	465	.	NZ_CP009273	2719646	2722368
UN	466	.	NZ_CP009273	2723163	2724073
UN	467	.	NZ_CP009273	2989955	2990821
UN	468	.	NZ_CP009273	3123740	3124468
UN	469	.	NZ_CP009273	3179687	3179687
UN	470	.	NZ_CP009273	3179690	3180555
UN	471	.	NZ_CP009273	3359146	3359876
UN	472	.	NZ_CP009273	3417254	3417254
UN	473	.	NZ_CP009273	3417256	3417783
UN	474	.	NZ_CP009273	3418234	3419973
UN	475	.	NZ_CP009273	3420406	3421676
UN	476	.	NZ_CP009273	3463761	3463857
UN	477	.	NZ_CP009273	3577029	3577315
UN	478	.	NZ_CP009273	3612868	3614217
UN	479	.	NZ_CP009273	3614682	3615420
UN	480	.	NZ_CP009273	3645633	3646357
UN	481	.	NZ_CP009273	3659994	3659997
UN	482	.	NZ_CP009273	3659999	3660000
UN	483	.	NZ_CP009273	3660002	3660005
UN	484	.	NZ_CP009273	3755848	3757208
UN	485	.	NZ_CP009273	3757659	3758427
UN	486	.	NZ_CP009273	3935611	3936518
UN	487	.	NZ_CP009273	3937652	3938698
UN	488	.	NZ_CP009273	4028768	4028852
UN	489	.	NZ_CP009273	4029332	4030220
UN	490	.	NZ_CP009273	4031420	4031810
UN	491	.	NZ_CP009273	4031812	4031812
UN	492	.	NZ_CP009273	4032315	4032511
UN	493	.	NZ_CP009273	4032994	4033735
UN	494	.	NZ_CP009273	4156456	4156557
UN	495	.	NZ_CP009273	4156806	4157914
UN	496	.	NZ_CP009273	4158738	4161346
UN	497	.	NZ_CP009273	4166694	4166795
UN	498	.	NZ_CP009273	4198285	4199424
UN	499	.	NZ_CP009273	4200186	4202843
UN	500	.	NZ_CP009273	4488227	4489089
UN	501	.	NZ_CP009273	4497494	4497494
UN	502	.	NZ_CP009273	4497496	4498262