mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 93,243 | A→G | T26T (ACA→ACG) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
| RA | 118,308 | A→G | V113A (GTG→GCG) | nadC ← | quinolinate phosphoribosyltransferase (decarboxylating) |
| RA | 123,073 | G→A | Q19Q (CAG→CAA) | aceE → | pyruvate dehydrogenase E1 component |
| RA | 144,694 | A→G | S40G (AGC→GGC) | yadI → | putative PTS enzyme IIA component YadI |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 280,710 | (C)5→6 | coding (26/351 nt) | yagB ← | orphan antitoxin YagB |
| RA | 289,587 | G→A | A240V (GCC→GTC) | argF ← | CP4‑6 prophage; ornithine carbamoyltransferase ArgF |
| RA | 295,865 | A→G | V411A (GTT→GCT) | intF ← | CP4‑6 prophage; putative phage integrase |
| RA | 302,374 | A→G | V67A (GTG→GCG) | paoA ← | aldehyde dehydrogenase, Fe‑S subunit |
| RA | 308,054 | (C)7→8 | coding (1279/2526 nt) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 335,624 | (A)5→4 | coding (345/606 nt) | yahD → | ankyrin repeat‑containing protein YahD |
| RA | 422,922 | T→C | R135R (CGT→CGC) | malZ → | maltodextrin glucosidase |
| RA | 482,420 | T→A | M662L (ATG→TTG) | acrB ← | multidrug efflux pump RND permease AcrB |
| RA | 506,109 | C→T | A399V (GCC→GTC) | ushA → | 5'‑nucleotidase/UDP‑sugar hydrolase |
| RA | 510,024 | C→T | A452A (GCG→GCA) | copA ← | Cu(+) exporting P‑type ATPase |
| RA | 525,455 | A→G | D732G (GAC→GGC) | rhsD → | protein RhsD |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 533,779 | A→G | T257A (ACC→GCC) | allR → | DNA‑binding transcriptional repressor AllR |
| RA | 685,944 | G→A | N242N (AAC→AAT) | gltJ ← | glutamate/aspartate ABC transporter membrane subunit GltJ |
| RA | 723,048 | A→G | V456A (GTA→GCA) | kdpD ← | sensory histidine kinase KdpD |
| RA | 864,282 | C→T | A214V (GCG→GTG) | fsaA → | fructose‑6‑phosphate aldolase 1 |
| RA | 874,538 | A→G | K520K (AAA→AAG) | pdeI → | putative c‑di‑GMP phosphodiesterase PdeI |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 918,956 | G→A | R55R (CGC→CGT) | ybjX ← | DUF535 domain‑containing protein YbjX |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 996,394 | T→A | D184V (GAT→GTT) | ssuA ← | aliphatic sulfonate ABC transporter periplasmic binding protein |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,016,897 | T→C | Q468R (CAG→CGG) | ycbZ ← | putative ATP‑dependent protease YcbZ |
| RA | 1,142,478 | A→G | T630T (ACT→ACC) | rne ← | ribonuclease E |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,166,738 | A→G | E218E (GAA→GAG) | ndh → | NADH:quinone oxidoreductase II |
| RA | 1,175,955 | C→T | R177C (CGT→TGT) | lolC → | lipoprotein release complex ‑ inner membrane subunit |
| RA | 1,180,739 | (G)6→7 | coding (529/789 nt) | ycfZ ← | putative inner membrane protein |
| RA | 1,212,088 | (C)8→7 | intergenic (‑85/+172) | iraM ← / ← ymgK | anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis/protein YmgK |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,238,394 | A→G | Y275C (TAC→TGC) | dadA → | D‑amino acid dehydrogenase |
| RA | 1,240,196 | A→G | intergenic (+247/‑64) | dadX → / → ymgM | alanine racemase 2/protein YmgM |
| RA | 1,244,639 | A→G | intergenic (‑112/‑89) | ycgR ← / → ymgE | flagellar brake protein YcgR/PF04226 family protein YmgE |
| RA | 1,308,577 | T→C | V23V (GTA→GTG) | clsA ← | cardiolipin synthase A |
| RA | 1,328,833 | C→T | D94N (GAT→AAT) | yciK ← | putative oxidoreductase |
| RA | 1,339,054 | A→G | V36A (GTC→GCC) | ribA ← | GTP cyclohydrolase 2 |
| RA | 1,362,537 | C→T | intergenic (+69/‑206) | puuR → / → puuC | DNA‑binding transcriptional repressor PuuR/gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase |
| RA | 1,388,635 | A→G | G59G (GGT→GGC) | tpx ← | lipid hydroperoxide peroxidase |
| RA | 1,399,675 | A→G | intergenic (‑149/+46) | fnr ← / ← ogt | DNA‑binding transcriptional dual regulator FNR/methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase |
| RA | 1,422,316 | A→G | T112A (ACC→GCC) | ydaV → | Rac prophage; putative ATP‑binding protein YdaV |
| RA | 1,437,231 | (T)9→10 | intergenic (+2/+29) | micC → / ← ydbK | small regulatory RNA MicC/putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,444,553 | T→C | H501H (CAT→CAC) | ydbH → | PF11739 family protein YdbH |
| RA | 1,446,045 | G→A | D56N (GAC→AAC) | ydbL → | DUF1318 domain‑containing protein YdbL |
| RA | 1,451,493 | T→C | intergenic (‑144/+104) | tynA ← / ← paaZ | copper‑containing amine oxidase/oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,458,689 | A→G | I142M (ATA→ATG) | paaG → | putative ring 1,2‑epoxyphenylacetyl‑CoA isomerase (oxepin‑CoA forming) |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,561,054 | A→G | D476D (GAT→GAC) | ddpA ← | putative D,D‑dipeptide ABC transporter periplasmic binding protein |
| RA | 1,580,210 | G→A | P194L (CCG→CTG) | ydeM ← | putative anaerobic sulfatase maturation enzyme YdeM |
| RA | 1,594,256 | (C)8→9 | pseudogene (3831/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,604,471 | A→G | Y142C (TAC→TGC) | lsrD → | Autoinducer‑2 ABC transporter membrane subunit LsrD |
| RA | 1,628,250 | T→C | V245A (GTC→GCC) | ydfG → | 3‑hydroxy acid dehydrogenase |
| RA | 1,628,930 | (A)5→6 | coding (579/687 nt) | ydfH → | DNA‑binding transcriptional repressor YdfH |
| RA | 1,631,544 | Δ1 bp | coding (742/1284 nt) | ydfJ ← | putative transporter YdfJ |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,674,901 | G→A | G330E (GGA→GAA) | tqsA → | autoinducer 2 exporter |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,692,417 | G→A | G145G (GGC→GGT) | uidC ← | outer membrane porin family protein |
| RA | 1,703,538 | T→C | E257E (GAA→GAG) | ydgJ ← | putative oxidoreductase YdgJ |
| RA | 1,741,746 | G→A | A112T (GCC→ACC) | cfa → | cyclopropane fatty acyl phospholipid synthase |
| RA | 1,857,330 | A→G | L147P (CTG→CCG) | ydjI ← | putative aldolase YdjI |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,946,531 | T→C | V94A (GTT→GCT) | yebB → | putative papain‑like amidase YebB |
| RA | 1,949,276 | T→C | D416G (GAC→GGC) | aspS ← | aspartate‑‑tRNA ligase |
| RA | 1,951,982 | G→A | P196P (CCG→CCA) | yecE → | DUF72 domain‑containing protein YecE |
| RA | 1,976,588 | G→A | V184V (GTC→GTT) | motA ← | motility protein A |
| RA | 1,977,215 | (A)8→7 | intergenic (‑76/+51) | motA ← / ← flhC | motility protein A/DNA‑binding transcriptional dual regulator FlhC |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,037,311 | T→C | E281G (GAG→GGG) | hprS ← | sensory histidine kinase HprS |
| RA | 2,047,440 | G→A | G835S (GGC→AGC) | yeeJ → | inverse autotransporter adhesin |
| RA | 2,096,693 | T→C | V27A (GTA→GCA) | hisI → | putative bifunctional phosphoribosyl‑AMP cyclohydrolase/phosphoribosyl‑ATP pyrophosphatase |
| RA | 2,104,564 | A→G | V174A (GTC→GCC) | wbbJ ← | putative acyl transferase |
| RA | 2,107,568 | T→C | E254E (GAA→GAG) | glf ← | UDP‑galactopyranose mutase |
| RA | 2,124,657 | C→T | V364I (GTC→ATC) | wcaI ← | putative colanic biosynthesis glycosyl transferase |
| RA | 2,142,531 | T→C | T140A (ACC→GCC) | udk ← | uridine/cytidine kinase |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,214,839 | C→T | intergenic (‑195/‑27) | btsS ← / → mlrA | high‑affinity pyruvate receptor/DNA‑binding transcriptional activator MlrA |
| RA | 2,218,611 | (T)6→7 | coding (871/918 nt) | osmF ← | glycine betaine ABC transporter periplasmic binding protein OsmF |
| RA | 2,221,126 | G→A | H288H (CAC→CAT) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,304,522 | 2 bp→TC | intergenic (+129/+585) | eco → / ← mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| RA | 2,306,954 | C→T | intergenic (‑200/+18) | mqo ← / ← yojI | malate:quinone oxidoreductase/ABC transporter family protein/microcin J25 efflux protein |
| RA | 2,322,813 | G→A | L316L (CTG→CTA) | atoC → | DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC |
| RA | 2,393,126 | (G)5→6 | intergenic (‑85/+79) | nuoM ← / ← nuoL | NADH:quinone oxidoreductase subunit M/NADH:quinone oxidoreductase subunit L |
| RA | 2,419,382 | (C)6→7 | coding (407/555 nt) | yfcE ← | phosphodiesterase YfcE |
| RA | 2,430,190 | T→C | I17V (ATT→GTT) | purF ← | amidophosphoribosyltransferase |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,512,699 | T→C | N3S (AAC→AGC) | mntH ← | Mn(2(+))/Fe(2(+)): H(+) symporter MntH |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,529,863 | T→C | N105S (AAC→AGC) | ligA ← | DNA ligase |
| RA | 2,557,244 | T→G | G18G (GGA→GGC) | eutC ← | ethanolamine ammonia‑lyase subunit beta |
| RA | 2,563,545 | G→A | intergenic (+428/‑47) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein YffP/CPZ‑55 prophage; uncharacterized protein YffQ |
| RA | 2,575,920 | A→G | intergenic (‑115/+178) | eutS ← / ← maeB | putative structural protein, ethanolamine utilization microcompartment/malate dehydrogenase |
| RA | 2,602,017 | (C)7→8 | coding (200/2019 nt) | hyfB → | hydrogenase 4 component B |
| RA | 2,610,133 | T→C | R549R (CGT→CGC) | hyfG → | hydrogenase 4 catalytic subunit HyfG |
| RA | 2,690,033 | T→C | T356A (ACA→GCA) | glrK ← | sensory histidine kinase GlrK |
| RA | 2,693,393 | A→G | G717G (GGT→GGC) | purL ← | phosphoribosylformylglycinamide synthetase |
| RA | 2,715,501 | G→A | A27T (GCC→ACC) | eamB → | cysteine/O‑acetylserine exporter EamB |
| RA | 2,734,543 | (C)8→9 | coding (492/732 nt) | pgeF ← | polyphenol oxidase YfiH |
| RA | 2,744,694 | T→C | T216A (ACC→GCC) | trmD ← | tRNA m(1)G37 methyltransferase |
| RA | 2,767,507 | (C)7→8 | intergenic (+152/‑203) | rnlB → / → yfjP | CP4‑57 prophage; antitoxin RnlB/CP4‑57 prophage; putative GTP‑binding protein YfjP |
| RA | 2,780,109 | G→A | A873V (GCC→GTC) | ypjA ← | adhesin‑like autotransporter YpjA |
| RA | 2,788,007 | T→C | pseudogene (1611/2253 nt) | ygaQ → | putative uncharacterized protein YgaQ |
| RA | 2,795,223 | T→C | V324A (GTA→GCA) | gabP → | 4‑aminobutyrate:H(+) symporter |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,821,952 | T→C | G20G (GGA→GGG) | alaS ← | alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor |
| RA | 2,832,059 | T→C | E77E (GAA→GAG) | norR ← | DNA‑binding transcriptional dual regulator NorR |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,906,839 | A→G | I368T (ATC→ACC) | eno ← | enolase |
| RA | 2,914,300 | G→A | P234L (CCC→CTC) | rlmD ← | 23S rRNA m(5)U1939 methyltransferase |
| RA | 2,929,619 | C→T | S15F (TCC→TTC) | sdaB → | L‑serine deaminase II |
| RA | 2,941,730 | Δ1 bp | coding (838/918 nt) | gcvA ← | DNA‑binding transcriptional dual regulator GcvA |
| RA | 2,942,298 | A→G | R90R (CGT→CGC) | gcvA ← | DNA‑binding transcriptional dual regulator GcvA |
| RA | 2,945,011 | T→C | intergenic (+26/+25) | csdE → / ← tcdA | sulfur acceptor protein CsdE/tRNA threonylcarbamoyladenosine dehydratase |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,984,753 | G→A | S280S (AGC→AGT) | yqeF ← | putative acyltransferase |
| RA | 2,990,363 | T→C | intergenic (‑3/‑191) | yqeK ← / → ygeF | protein YqeK/protein YgeF |
| RA | 3,020,790 | C→T | A84V (GCG→GTG) | ygfM → | putative oxidoreductase |
| RA | 3,042,827 | C→T | D108N (GAT→AAT) | yqfA ← | hemolysin‑III family protein |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,085,636 | G→A | F92F (TTC→TTT) | speA ← | arginine decarboxylase, biosynthetic |
| RA | 3,104,287 | G→A | L65L (CTG→CTA) | yggX → | putative Fe(2(+))‑trafficking protein |
| RA | 3,108,796 | G→A | C120C (TGC→TGT) | speC ← | ornithine decarboxylase, biosynthetic |
| RA | 3,132,707 | T→C | Y169C (TAC→TGC) | yghR ← | putative ATP‑binding protein YghR |
| RA | 3,150,442 | C→T | Q261* (CAA→TAA) | yghA → | NADP(+)‑dependent aldehyde reductase |
| RA | 3,309,006 | (C)6→7 | intergenic (‑82/+27) | nlpI ← / ← pnp | lipoprotein NlpI/polynucleotide phosphorylase |
| RA | 3,344,977 | T→C | S87S (AGT→AGC) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,411,633 | G→A | intergenic (+66/‑20) | fis → / → yhdJ | DNA‑binding transcriptional dual regulator Fis/DNA adenine methyltransferase |
| RA | 3,422,141 | T→C | W273R (TGG→CGG) | yhdY → | putative ABC transporter membrane subunit YhdY |
| RA | 3,428,918 | Δ1 bp | intergenic (‑156/‑318) | rrsD ← / → yrdA | 16S ribosomal RNA/protein YrdA |
| RA | 3,428,923 | Δ1 bp | intergenic (‑161/‑313) | rrsD ← / → yrdA | 16S ribosomal RNA/protein YrdA |
| RA | 3,428,927 | T→G | intergenic (‑165/‑309) | rrsD ← / → yrdA | 16S ribosomal RNA/protein YrdA |
| RA | 3,429,258 | A→G | Y8C (TAC→TGC) | yrdA → | protein YrdA |
| RA | 3,541,548 | A→G | D381G (GAC→GGC) | feoB → | Fe(2(+)) transporter FeoB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,576,951 | (C)5→6 | coding (111/1341 nt) | gntU ← | low‑affinity gluconate transporter |
| RA | 3,577,648 | A→G | intergenic (‑56/+83) | gntK ← / ← gntR | D‑gluconate kinase, thermostable/DNA‑binding transcriptional repressor GntR |
| RA | 3,589,257 | C→T | T257T (ACG→ACA) | ugpE ← | sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpE |
| RA | 3,590,501 | G→A | I137I (ATC→ATT) | ugpA ← | sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpA |
| RA | 3,657,779 | A→G | intergenic (+212/+207) | hdeD → / ← arrS | acid‑resistance membrane protein/small regulatory RNA ArrS |
| RA | 3,699,049 | G→A | G279D (GGC→GAC) | bcsG → | cellulose phosphoethanolamine transferase |
| RA | 3,700,280 | A→G | intergenic (+81/‑283) | rdlD → / → yhjV | antisense regulatory RNA RdlD/putative transporter YhjV |
| RA | 3,712,926 | (T)8→7 | coding (9/699 nt) | yhjY ← | conserved protein YhjY |
| RA | 3,738,781 | G→A | A429T (GCC→ACC) | malS → | alpha‑amylase |
| RA | 3,796,188 | (C)5→6 | coding (210/960 nt) | waaC → | ADP‑heptose:LPS heptosyltransferase 1 |
| RA | 3,812,141 | (A)6→7 | coding (419/669 nt) | yicR ← | RadC‑like JAB domain‑containing protein YicR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,859,835 | T→C | L94L (TTA→TTG) | yidK ← | putative transporter YidK |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,878,864 | T→C | E419G (GAA→GGA) | gyrB ← | DNA gyrase subunit B |
| RA | 3,931,183 | (G)7→8 | intergenic (‑90/‑133) | ravA ← / → kup | regulatory ATPase RavA/K(+):H(+) symporter Kup |
| RA | 3,934,196 | G→A | G140D (GGC→GAC) | rbsA → | ribose ABC transporter ATP binding subunit |
| RA | 4,021,782 | C→T | S519S (AGC→AGT) | ubiB → | ubiquinone biosynthesis protein UbiB |
| RA | 4,065,094 | T→C | I225V (ATT→GTT) | yihO ← | putative sulfoquinovose transporter |
| RA | 4,079,819 | T→C | R23R (CGT→CGC) | yiiF → | protein YiiF |
| RA | 4,082,540 | C→T | A74T (GCC→ACC) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | 4,232,017 | A→G | V406A (GTA→GCA) | lysC ← | aspartate kinase III |
| RA | 4,242,594 | T→C | intergenic (‑340/+32) | xylE ← / ← malG | D‑xylose:H(+) symporter/maltose ABC transporter membrane subunit MalG |
| RA | 4,267,446 | C→T | G111G (GGC→GGT) | tyrB → | tyrosine aminotransferase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,307,453 | A→G | V116A (GTT→GCT) | alsK ← | D‑allose kinase |
| RA | 4,309,080 | Δ1 bp | coding (390/981 nt) | alsC ← | D‑allose ABC transporter membrane subunit |
| RA | 4,331,708 | A→G | T403A (ACG→GCG) | proP → | osmolyte:H(+) symporter ProP |
| RA | 4,355,144 | A→G | L423P (CTG→CCG) | dtpC ← | dipeptide/tripeptide:H(+) symporter DtpC |
| RA | 4,414,863 | A→G | T197A (ACC→GCC) | aidB → | putative acyl‑CoA dehydrogenase AidB |
| RA | 4,424,457 | (A)8→9 | intergenic (+71/+59) | ulaF → / ← yjfY | L‑ribulose‑5‑phosphate 4‑epimerase UlaF/DUF1471 domain‑containing protein YjfY |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,486,942 | A→G | D242G (GAC→GGC) | lptF → | lipopolysaccharide transport system protein LptF |
| RA | 4,488,579 | (C)7→9 | coding (1485/1503 nt) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,488,964 | T→C | D367G (GAT→GGT) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,503,169 | (G)5→6 | coding (263/1329 nt) | insG ← | KpLE2 phage‑like element; IS4 putative transposase |
| RA | 4,561,940 | T→C | T246A (ACC→GCC) | yjiJ ← | putative transporter YjiJ |
| RA | 4,606,094 | (G)8→9 | noncoding (72/87 nt) | leuV ← | tRNA‑Leu |
| RA | 4,637,700 | C→T | R335R (CGC→CGT) | creC → | sensory histidine kinase CreC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423770–3424230 | 3424540–3424238 | 9–771 | 19 [13] | [15] 16 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 5 (0.080) | 89 (1.510) | 56/244 | 0.0 | 96.5% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 2 (0.030) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 5 (0.080) | 51 (0.870) | 39/244 | 0.3 | 94.1% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 2 (0.030) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 73 (1.130) | 50/268 | 0.2 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 95 (1.430) | 115 (1.740) | 64/274 | 0.0 | 70.7% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.020) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 80 (1.200) | 56/276 | 0.1 | 96.4% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.050) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||