mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 8,341 | A→G | N35S (AAC→AGC) | talB → | transaldolase B |
| RA | 76,698 | A→G | V201A (GTG→GCG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 82,968 | A→G | Y188H (TAT→CAT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 136,500 | (A)7→8 | intergenic (‑36/+70) | speE ← / ← yacC | spermidine synthase/putative lipoprotein YacC |
| RA | 189,931 | A→G | T20A (ACC→GCC) | rpsB → | 30S ribosomal subunit protein S2 |
| RA | 192,849 | A→G | intergenic (+269/‑23) | pyrH → / → frr | UMP kinase/ribosome‑recycling factor |
| RA | 245,746 | A→G | G20G (GGT→GGC) | yafK ← | L,D‑transpeptidase domain‑containing protein YafK |
| RA | 246,507 | Δ1 bp | intergenic (‑5/‑205) | dinJ ← / → yafL | antitoxin/DNA‑binding transcriptional repressor DinJ/NlpC/P60 family protein YafL |
| RA | 248,095 | C→T | D153D (GAC→GAT) | rayT → | REP‑associated tyrosine transposase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 269,031 | A→G | intergenic (‑71/+258) | ykfA ← / ← perR | CP4‑6 prophage; putative GTP‑binding protein YkfA/putative transcriptional regulator PerR |
| RA | 305,705 | G→A | T371T (ACC→ACT) | ecpD ← | fimbrial adhesin EcpD |
| RA | 306,269 | G→A | C183C (TGC→TGT) | ecpD ← | fimbrial adhesin EcpD |
| RA | 310,057 | (G)6→7 | intergenic (‑31/+27) | ecpB ← / ← ecpA | putative fimbrial chaperone EcpB/common pilus major subunit |
| RA | 348,655 | T→C | intergenic (‑212/‑27) | prpR ← / → prpB | DNA‑binding transcriptional dual regulator PrpR/2‑methylisocitrate lyase |
| RA | 375,945 | (G)5→4 | coding (487/1212 nt) | mhpT → | 3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| RA | 380,022 | (G)10→9 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| RA | 458,739 | (G)6→7 | intergenic (+39/‑149) | clpX → / → lon | ATP‑dependent Clp protease ATP‑binding subunit ClpX/Lon protease |
| RA | 463,389 | A→G | H492R (CAC→CGC) | ppiD → | periplasmic folding chaperone |
| RA | 485,839 | C→T | Q27* (CAG→TAG) | acrR → | DNA‑binding transcriptional repressor AcrR |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 533,777 | A→G | D256G (GAC→GGC) | allR → | DNA‑binding transcriptional repressor AllR |
| RA | 616,083 | (A)6→7 | coding (1927/3882 nt) | entF → | apo‑serine activating enzyme |
| RA | 632,017 | (G)7→8 | intergenic (+18/‑165) | cstA → / → ybdD | carbon starvation protein A/conserved protein YbdD |
| RA | 656,733 | A→G | A59A (GCA→GCG) | pagP → | Lipid IVA palmitoyltransferase |
| RA | 683,940 | T→C | N158S (AAC→AGC) | rihA ← | pyrimidine‑specific ribonucleoside hydrolase RihA |
| RA | 718,439 | A→G | G674G (GGT→GGC) | speF ← | ornithine decarboxylase, degradative |
| RA | 776,330 | (T)5→6 | intergenic (+53/‑12) | tolR → / → tolA | Tol‑Pal system protein TolR/Tol‑Pal system protein TolA |
| RA | 807,982 | (A)7→8 | coding (1276/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 902,007 | T→C | T82A (ACT→GCT) | artQ ← | L‑arginine ABC transporter membrane subunit ArtQ |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 937,539 | T→C | G56G (GGT→GGC) | lolA → | outer membrane lipoprotein carrier protein |
| RA | 976,288 | A→G | T223A (ACC→GCC) | mukE → | chromosome partitioning protein MukE |
| RA | 986,103 | A→G | S294P (TCC→CCC) | ompF ← | outer membrane porin F |
| RA | 988,627 | T→C | Y120C (TAT→TGT) | asnS ← | asparagine‑‑tRNA ligase |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,020,326 | A→G | intergenic (‑273/+84) | ompA ← / ← sulA | outer membrane porin A/cell division inhibitor SulA |
| RA | 1,026,410 | A→G | Y647C (TAC→TGC) | helD → | DNA helicase IV |
| RA | 1,047,260 | T→C | Y229C (TAC→TGC) | gfcD ← | putative lipoprotein GfcD |
| RA | 1,072,114 | C→T | A16T (GCC→ACC) | rutC ← | putative aminoacrylate peracid reductase |
| RA | 1,072,667 | A→G | L66P (CTG→CCG) | rutB ← | peroxyureidoacrylate/ureidoacrylate amidohydrolase |
| RA | 1,091,735 | T→C | L185L (TTA→TTG) | pgaA ← | partially deacetylated poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine outer membrane porin |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,223,984 | (A)7→6 | intergenic (+77/+295) | ycgI → / ← minE | protein YcgI/Z‑ring positioning protein MinE |
| RA | 1,245,862 | (C)6→7 | coding (1515/1698 nt) | treA ← | periplasmic trehalase |
| RA | 1,259,773 | C→T | R344H (CGT→CAT) | dauA ← | aerobic C4‑dicarboxylate transporter DauA |
| RA | 1,268,191 | C→T | G9G (GGC→GGT) | kdsA → | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase |
| RA | 1,271,528 | A→G | Y108H (TAT→CAT) | chaA ← | Na(+)/K(+):H(+) antiporter ChaA |
| RA | 1,289,743 | A→G | T167A (ACG→GCG) | rssA → | putative patatin‑like phospholipase RssA |
| RA | 1,290,435 | A→G | N65S (AAC→AGC) | rssB → | regulator of RpoS |
| RA | 1,310,701 | T→A | G55G (GGA→GGT) | yciI ← | protein YciI |
| RA | 1,313,330 | T→C | R112G (AGA→GGA) | yciC ← | putative inner membrane protein |
| RA | 1,343,797 | T→C | T184A (ACC→GCC) | yciT ← | putative DNA‑binding transcriptional regulator YciT |
| RA | 1,357,310 | A→G | intergenic (‑200/+113) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,365,567 | C→T | F6F (TTC→TTT) | puuE → | 4‑aminobutyrate aminotransferase PuuE |
| RA | 1,496,601 | A→G | E438E (GAA→GAG) | ydcJ → | DUF1338 domain‑containing protein YdcJ |
| RA | 1,504,102 | (A)5→4 | coding (386/1149 nt) | insQ → | putative insertion element transposase InsQ |
| RA | 1,524,964 | T→C | A339A (GCA→GCG) | ansP ← | L‑asparagine transporter |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,579,553 | A→G | K3K (AAA→AAG) | yneP → | protein YneP |
| RA | 1,582,972 | T→C | H239R (CAC→CGC) | ydeO ← | DNA‑binding transcriptional dual regulator YdeO |
| RA | 1,594,132 | (C)8→7 | pseudogene (3955/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,647,327 | T→C | intergenic (‑4/+19) | ydfW ← / ← ydfX | Qin prophage; uncharacterized protein YdfW/Qin prophage; uncharacterized protein YdfX |
| RA | 1,675,608 | (C)5→6 | coding (753/1389 nt) | pntB ← | pyridine nucleotide transhydrogenase subunit beta |
| RA | 1,677,935 | G→A | intergenic (‑32/‑492) | pntA ← / → ydgH | pyridine nucleotide transhydrogenase subunit alpha/DUF1471 domain‑containing protein YdgH |
| RA | 1,680,325 | G→A | A257T (GCA→ACA) | ydgI → | putative arginine:ornithine antiporter |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,685,790 | C→A | A267S (GCG→TCG) | fumC ← | fumarase C |
| RA | 1,687,170 | C→T | R403Q (CGG→CAG) | fumA ← | fumarase A |
| RA | 1,692,183 | (C)5→6 | coding (669/1266 nt) | uidC ← | outer membrane porin family protein |
| RA | 1,698,024 | T→C | N6S (AAC→AGC) | hdhA ← | 7‑alpha‑hydroxysteroid dehydrogenase |
| RA | 1,711,730 | G→A | E70K (GAA→AAA) | nth → | endonuclease III |
| RA | 1,769,193 | G→A | W40* (TGG→TGA) | ydiK → | putative transporter YdiK |
| RA | 1,775,114 | T→C | H143H (CAT→CAC) | aroD → | 3‑dehydroquinate dehydratase |
| RA | 1,819,170 | T→C | N93S (AAC→AGC) | chbR ← | DNA‑binding transcriptional dual regulator ChbR |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| RA | 1,874,336 | (T)6→5 | intergenic (‑154/‑16) | yoaI ← / → yeaL | protein YoaI/conserved inner membrane protein YeaL |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,909,860 | G→A | G80G (GGC→GGT) | kdgR ← | DNA‑binding transcriptional repressor KdgR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,986,976 | T→C | F18L (TTT→CTT) | ftnB → | putative ferritin‑like protein |
| RA | 2,160,544 | T→C | V720A (GTA→GCA) | mdtC → | multidrug efflux pump RND permease subunit MdtC |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,183,318 | A→G | F112L (TTT→CTT) | yegX ← | putative hydrolase |
| RA | 2,211,175 | G→C | intergenic (+231/‑50) | yehQ → / → yehR | SWIM zinc finger domains‑containing protein YehQ/DUF1307 domain‑containing lipoprotein YehR |
| RA | 2,242,173 | T→C | L265L (TTA→TTG) | yeiB ← | DUF418 domain‑containing protein YeiB |
| RA | 2,290,997 | A→G | A166A (GCA→GCG) | narP → | DNA‑binding transcriptional dual regulator NarP |
| RA | 2,351,935 | T→C | H147R (CAC→CGC) | glpT ← | sn‑glycerol 3‑phosphate:phosphate antiporter |
| RA | 2,393,379 | A→G | I556I (ATT→ATC) | nuoL ← | NADH:quinone oxidoreductase subunit L |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,457,767 | T→C | T465A (ACA→GCA) | fadJ ← | 3‑hydroxyacyl‑CoA dehydrogenase FadJ |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,576,004 | (T)8→7 | intergenic (‑199/+94) | eutS ← / ← maeB | putative structural protein, ethanolamine utilization microcompartment/malate dehydrogenase |
| RA | 2,729,138 | G→A | noncoding (47/2904 nt) | rrlG ← | 23S ribosomal RNA |
| RA | 2,749,698 | T→C | Y309H (TAT→CAT) | yfjD → | putative inner membrane protein |
| RA | 2,772,330 | Δ1 bp | pseudogene (853/1016 nt) | yfjV ← | CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,871,269 | A→G | G12G (GGT→GGC) | truD ← | tRNA pseudouridine(13) synthase |
| RA | 2,878,540 | A→G | intergenic (+922/+29) | iap → / ← cas2 | alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2 |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,964,353 | T→C | intergenic (‑176/+8) | ppdA ← / ← thyA | conserved protein PpdA/thymidylate synthase |
| RA | 2,965,822 | T→C | G72G (GGA→GGG) | lgt ← | phosphatidylglycerol‑‑prolipoprotein diacylglyceryl transferase |
| RA | 2,975,047 | T→C | E323G (GAG→GGG) | aas ← | acyltransferase |
| RA | 2,981,789 | T→C | T132A (ACC→GCC) | araE ← | arabinose:H(+) symporter |
| RA | 2,999,680 | (G)7→8 | coding (212/756 nt) | ygeR ← | LysM domain‑containing putative peptidase lipoprotein YgeR |
| RA | 3,015,247 | A→G | T30A (ACA→GCA) | mocA → | molybdenum cofactor cytidylyltransferase |
| RA | 3,037,675 | (C)5→4 | coding (432/1734 nt) | recJ ← | ssDNA‑specific exonuclease RecJ |
| RA | 3,053,565 | (T)5→4 | coding (1276/1326 nt) | pepP ← | proline aminopeptidase P II |
| RA | 3,065,625 | Δ1 bp | coding (824/1479 nt) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,066,576 | T→C | N200D (AAC→GAC) | ygfI ← | putative LysR‑type DNA‑binding transcriptional regulator YgfI |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,088,440 | A→G | T53A (ACG→GCG) | galP → | galactose:H(+) symporter |
| RA | 3,162,320 | G→A | A117V (GCA→GTA) | ftsP ← | cell division protein required during stress conditions |
| RA | 3,162,965 | G→A | P173S (CCG→TCG) | plsC ← | 1‑acylglycerol‑3‑phosphate O‑acyltransferase |
| RA | 3,224,233 | A→G | H534R (CAC→CGC) | ebgA → | evolved beta‑D‑galactosidase subunit alpha |
| RA | 3,227,107 | T→C | S292P (TCC→CCC) | ygjI → | putative transporter YgjI |
| RA | 3,231,325 | T→C | intergenic (+86/‑340) | ygjK → / → fadH | glycoside hydrolase/2,4‑dienoyl‑CoA reductase |
| RA | 3,231,336 | A→T | intergenic (+97/‑329) | ygjK → / → fadH | glycoside hydrolase/2,4‑dienoyl‑CoA reductase |
| RA | 3,231,367 | A→G | intergenic (+128/‑298) | ygjK → / → fadH | glycoside hydrolase/2,4‑dienoyl‑CoA reductase |
| RA | 3,231,411 | G→A | intergenic (+172/‑254) | ygjK → / → fadH | glycoside hydrolase/2,4‑dienoyl‑CoA reductase |
| RA | 3,231,417 | A→G | intergenic (+178/‑248) | ygjK → / → fadH | glycoside hydrolase/2,4‑dienoyl‑CoA reductase |
| RA | 3,241,613 | (A)7→8 | coding (132/552 nt) | ygjV ← | inner membrane protein |
| RA | 3,270,481 | T→C | noncoding (112/377 nt) | rnpB ← | RNase P catalytic RNA component |
| RA | 3,277,388 | T→C | F18L (TTT→CTT) | yhaV → | ribosome‑dependent mRNA interferase toxin YhaV |
| RA | 3,294,582 | T→C | L395L (TTG→CTG) | lpoA → | outer membrane lipoprotein ‑ activator of MrcA activity |
| RA | 3,305,273 | T→C | N182S (AAC→AGC) | mtr ← | tryptophan:H(+) symporter Mtr |
| RA | 3,319,286 | T→C | V217A (GTC→GCC) | argG → | argininosuccinate synthetase |
| RA | 3,333,521 | C→A | intergenic (‑70/‑189) | rplU ← / → ispB | 50S ribosomal subunit protein L21/all‑trans‑octaprenyl‑diphosphate synthase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,393,568 | A→G | G897G (GGT→GGC) | yhdP ← | AsmA2 domain‑containing protein |
| RA | 3,432,086 | T→A | I127F (ATC→TTC) | smg ← | DUF494 domain‑containing protein Smg |
| RA | 3,441,433 | A→G | R81R (CGT→CGC) | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,454,255 | A→G | S382P (TCG→CCG) | gspA ← | Type II secretion system protein GspA |
| RA | 3,529,022 | G→A | A118A (GCG→GCA) | yrfG → | purine nucleotidase |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,607,656 | G→A | A402A (GCG→GCA) | zntA → | Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase |
| RA | 3,629,190 | A→G | F117L (TTC→CTC) | rbbA ← | ribosome‑associated ATPase |
| RA | 3,659,012 | T→C | noncoding (21/91 nt) | gadF → | small regulatory RNA GadF |
| RA | 3,661,184 | T→C | G257G (GGT→GGC) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | 3,685,631 | (C)6→7 | intergenic (‑13/+69) | pdeK ← / ← bcsC | putative c‑di‑GMP phosphodiesterase PdeK/cellulose biosynthesis protein BcsC |
| RA | 3,694,686 | (C)6→7 | coding (551/2619 nt) | bcsA ← | cellulose synthase catalytic subunit |
| RA | 3,724,669 | T→C | D217G (GAC→GGC) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,747,393 | C→T | R104C (CGC→TGC) | lyxK → | L‑xylulose kinase |
| RA | 3,798,171 | A→G | L408L (TTA→TTG) | waaL → | O‑antigen ligase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,829,426 | T→C | V161A (GTT→GCT) | xanP → | xanthine:H(+) symporter XanP |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,900,244 | T→C | T112A (ACC→GCC) | yieL ← | putative hydrolase YieL |
| RA | 3,915,508 | (A)8→9 | intergenic (‑308/+45) | glmU ← / ← atpC | fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase/ATP synthase F1 complex subunit epsilon |
| RA | 3,940,137 | A→G | V159A (GTC→GCC) | hsrA ← | putative transporter HsrA |
| RA | 3,950,707 | G→T | pseudogene (148/1645 nt) | ilvG → | acetolactate synthase II subunit IlvG, N‑terminal fragment (pseudogene) |
| RA | 3,964,151 | C→T | A27T (GCT→ACT) | gpp ← | guanosine‑5'‑triphosphate,3'‑diphosphate phosphatase |
| RA | 3,988,251 | C→T | A272A (GCG→GCA) | hemX ← | PF04375 family protein HemX |
| RA | 4,024,847 | Δ1 bp | intergenic (‑26/‑141) | rfaH ← / → ubiD | transcription antiterminator RfaH/3‑octaprenyl‑4‑hydroxybenzoate decarboxylase |
| RA | 4,032,963 | T→C | C158R (TGT→CGT) | yigZ → | IMPACT family member YigZ |
| RA | 4,093,648 | A→G | W209R (TGG→CGG) | rhaD ← | rhamnulose‑1‑phosphate aldolase |
| RA | 4,163,650 | (A)6→5 | coding (12/1845 nt) | btuB → | cobalamin/cobinamide outer membrane transporter |
| RA | 4,174,845 | A→C | L61W (TTG→TGG) | coaA ← | pantothenate kinase |
| RA | 4,201,418 | C→T | A91T (GCC→ACC) | zraP ← | zinc responsive, periplasmic protein with chaperone activity |
| RA | 4,246,949 | A→G | T56A (ACC→GCC) | malK → | maltose ABC transporter ATP binding subunit |
| RA | 4,281,489 | T→C | F504L (TTC→CTC) | yjcE → | putative transporter YjcE |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,300,240 | C→T | R264H (CGT→CAT) | mdtP ← | putative multidrug efflux pump outer membrane channel |
| RA | 4,303,881 | A→G | F77L (TTC→CTC) | mdtN ← | putative multidrug efflux pump membrane fusion protein |
| RA | 4,326,188 | G→T | intergenic (‑447/+211) | yjdN ← / ← yjdM | conserved protein YjdN/conserved protein YjdM |
| RA | 4,330,134 | A→G | T259A (ACC→GCC) | yjcZ → | uncharacterized protein YjcZ |
| RA | 4,336,361 | A→G | V224A (GTC→GCC) | adiC ← | arginine:agmatine antiporter |
| RA | 4,392,591 | A→G | noncoding (9/76 nt) | glyY → | tRNA‑Gly |
| RA | 4,410,053 | (T)9→8 | intergenic (+47/‑80) | rlmB → / → yjfI | 23S rRNA 2'‑O‑ribose G2251 methyltransferase/conserved protein YjfI |
| RA | 4,422,800 | T→C | R205R (CGT→CGC) | ulaD → | 3‑keto‑L‑gulonate‑6‑phosphate decarboxylase UlaD |
| RA | 4,436,066 | C→T | G167E (GGA→GAA) | cpdB ← | 2'3' cyclic nucleotide phosphodiesterase/3' nucleotidase |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,453,453 | A→G | M295V (ATG→GTG) | ytfT → | galactofuranose ABC transporter putative membrane subunit YtfT |
| RA | 4,457,334 | A→G | L178L (TTA→CTA) | yjgA ← | DUF615 domain‑containing protein YjgA |
| RA | 4,484,244 | T→C | T13A (ACC→GCC) | holC ← | DNA polymerase III subunit chi |
| RA | 4,496,872 | A→G | pseudogene (123/1191 nt) | intB → | KpLE2 phage‑like element; putative integrase |
| RA | 4,502,600 | T→C | T278A (ACC→GCC) | insG ← | KpLE2 phage‑like element; IS4 putative transposase |
| RA | 4,515,272 | T→C | Y469C (TAC→TGC) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,553,276 | A→G | T126A (ACG→GCG) | uxuB → | D‑mannonate oxidoreductase |
| RA | 4,556,318 | C→T | M1M (ATG→ATA) † | yjiC ← | uncharacterized protein YjiC |
| RA | 4,574,754 | T→C | pseudogene (620/2721 nt) | yjiV → | putative uncharacterized protein YjiV |
| RA | 4,583,658 | A→G | L1035P (CTC→CCC) | hsdR ← | type I restriction enzyme EcoKI endonuclease component |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196275 | 1211426 | 15152 | 21 [15] | [19] 20 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |
| * | * | ÷ | NC_000913 | 1432396–1432653 | 1433541–1433373 | 721–1146 | 20 [19] | [15] 20 | [stfR]–[pinR] | [stfR],tfaR,[pinR] |
| * | * | ÷ | NC_000913 | 3423770–3424234 | 3424525–3424238 | 5–756 | 22 [16] | [19] 27 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 82 (1.010) | 58/268 | 0.2 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 148 (1.770) | 124 (1.490) | 78/274 | 0.0 | 62.6% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.010) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 109 (1.300) | 68/276 | 0.1 | 95.6% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 5 (0.060) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||