mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 129,506 | A→G | R585R (CGT→CGC) | yacH ← | DUF3300 domain‑containing protein YacH |
| RA | 186,400 | T→C | T751A (ACC→GCC) | glnD ← | PII uridylyltransferase/uridylyl removing enzyme |
| RA | 202,994 | A→G | V145V (GTA→GTG) | lpxA → | UDP‑N‑acetylglucosamine acyltransferase |
| RA | 217,231 | A→G | R515R (CGT→CGC) | proS ← | proline‑‑tRNA ligase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 343,414 | (A)6→7 | coding (531/1050 nt) | yahK → | aldehyde reductase, NADPH‑dependent |
| RA | 380,614 | C→T | G77S (GGT→AGT) | yaiO ← | outer membrane protein YaiO |
| RA | 465,308 | C→T | P80P (CCG→CCA) | queC ← | 7‑cyano‑7‑deazaguanine synthase |
| RA | 476,557 | (C)5→4 | noncoding (110/114 nt) | ffs → | signal recognition particle 4.5S RNA |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 562,666 | T→C | F111L (TTC→CTC) | sfmH → | putative fimbrial adhesin protein SfmH |
| RA | 607,735 | A→G | noncoding (2/59 nt) | sokE → | small RNA SokE |
| RA | 629,961 | A→G | Y23C (TAC→TGC) | cstA → | carbon starvation protein A |
| RA | 702,125 | +C | coding (627/1149 nt) | nagA ← | N‑acetylglucosamine‑6‑phosphate deacetylase |
| RA | 760,304 | G→A | W533* (TGG→TGA) | sucA → | subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
| RA | 764,218 | C→T | C13C (TGC→TGT) | sucD → | succinyl‑CoA synthetase subunit alpha |
| RA | 766,957 | (G)6→5 | coding (974/1977 nt) | mngA → | 2‑O‑alpha‑mannosyl‑D‑glycerate specific PTS enzyme II |
| RA | 791,903 | A→G | H51H (CAT→CAC) | galE ← | UDP‑glucose 4‑epimerase |
| RA | 845,352 | T→G | E43D (GAA→GAC) | ybiO ← | moderate conductance mechanosensitive channel |
| RA | 851,764 | T→C | K278K (AAA→AAG) | opgE ← | phosphoethanolamine transferase |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 921,589 | (C)5→6 | coding (1243/1947 nt) | macB → | ABC‑type tripartite efflux pump ATP binding/membrane subunit |
| RA | 925,899 | (G)7→8 | noncoding (73/88 nt) | serW ← | tRNA‑Ser |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 991,778 | A→G | E386G (GAA→GGA) | pepN → | aminopeptidase N |
| RA | 1,004,737 | (C)5→6 | intergenic (+80/‑31) | ycbF → / → pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,021,483 | +C | coding (346/630 nt) | sxy → | transcriptional coactivator for CRP |
| RA | 1,089,919 | C→T | G791S (GGT→AGT) | pgaA ← | partially deacetylated poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine outer membrane porin |
| RA | 1,105,499 | (G)5→6 | coding (86/312 nt) | ymdA → | uncharacterized protein YmdA |
| RA | 1,108,721 | (A)7→6 | coding (221/1158 nt) | opgC ← | protein required for succinyl modification of osmoregulated periplasmic glucans |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,177,724 | C→T | G135G (GGC→GGT) | lolE → | lipoprotein release complex ‑ inner membrane subunit |
| RA | 1,185,344 | A→G | V84A (GTT→GCT) | potA ← | spermidine preferential ABC transporter ATP binding subunit |
| RA | 1,206,187 | T→C | C153R (TGT→CGT) pseudogene (57/792 nt) |
beeE → jayE → |
e14 prophage; putative protein BeeE e14 prophage; putative protein JayE |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,237,741 | A→G | A57A (GCA→GCG) | dadA → | D‑amino acid dehydrogenase |
| RA | 1,253,816 | C→T | G713S (GGC→AGC) | ycgV ← | putative autotransporter adhesin YcgV |
| RA | 1,272,165 | T→C | V16A (GTT→GCT) | chaB → | putative cation transport regulator ChaB |
| RA | 1,360,555 | A→C | G118G (GGT→GGG) | puuA ← | glutamate‑putrescine ligase |
| RA | 1,363,134 | A→G | Y131C (TAC→TGC) | puuC → | gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase |
| RA | 1,366,698 | G→A | L383L (CTG→CTA) | puuE → | 4‑aminobutyrate aminotransferase PuuE |
| RA | 1,432,087 | C→T | G1013G (GGC→GGT) | stfR → | Rac prophage; putative membrane protein |
| RA | 1,444,662 | A→G | T538A (ACC→GCC) | ydbH → | PF11739 family protein YdbH |
| RA | 1,485,816 | T→C | V919A (GTA→GCA) | hrpA → | ATP‑dependent RNA helicase HrpA |
| RA | 1,502,123 | C→T | R188C (CGT→TGT) | tehB → | tellurite methyltransferase |
| RA | 1,521,448 | T→C | K540E (AAA→GAA) | yncD ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,527,810 | A→G | intergenic (+658/‑80) | yncH → / → rhsE | DUF5445 domain‑containing protein YncH/RhsE protein in rhs element |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,572,646 | C→T | E853K (GAG→AAG) | pqqL ← | putative zinc peptidase |
| RA | 1,580,480 | G→A | A104V (GCC→GTC) | ydeM ← | putative anaerobic sulfatase maturation enzyme YdeM |
| RA | 1,594,053 | (C)6→8 | pseudogene (4034/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,594,256 | (C)8→9 | pseudogene (3831/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,694,465 | A→G | V536A (GTC→GCC) | uidA ← | beta‑glucuronidase |
| RA | 1,699,689 | T→C | V112A (GTA→GCA) | malX → | PTS enzyme IIBC component MalX |
| RA | 1,707,358 | T→C | L147P (CTG→CCG) | rsxC → | SoxR [2Fe‑2S] reducing system protein RsxC |
| RA | 1,709,721 | A→G | T194A (ACC→GCC) | rsxD → | SoxR [2Fe‑2S] reducing system protein RsxD |
| RA | 1,750,067 | A→G | N94N (AAT→AAC) | ydhU ← | putative cytochrome YdhU |
| RA | 1,763,454 | T→C | T186A (ACC→GCC) | sufB ← | Fe‑S cluster scaffold complex subunit SufB |
| RA | 1,765,157 | T→C | intergenic (‑35/+65) | ydiH ← / ← menI | protein YdiH/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase |
| RA | 1,798,394 | T→C | P183P (CCA→CCG) | pheS ← | phenylalanine‑‑tRNA ligase subunit alpha |
| RA | 1,818,550 | (C)7→6 | intergenic (‑50/+55) | chbF ← / ← chbR | monoacetylchitobiose‑6‑phosphate hydrolase/DNA‑binding transcriptional dual regulator ChbR |
| RA | 1,834,524 | Δ1 bp | coding (409/678 nt) | ydjY → | 4Fe‑4S ferredoxin‑type domain‑containing protein YdjY |
| RA | 1,840,056 | T→C | V197A (GTG→GCG) | ynjE → | molybdopterin synthase sulfurtransferase |
| RA | 1,869,913 | C→T | A320V (GCC→GTC) | yeaH → | DUF444 domain‑containing protein YeaH |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| RA | 1,878,046 | G→A | S111N (AGC→AAC) | dgcP → | diguanylate cyclase DgcP |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,888,839 | A→G | I303T (ATC→ACC) | fadD ← | fatty acyl‑CoA synthetase |
| RA | 1,892,882 | (C)6→7 | coding (354/1911 nt) | yoaA ← | putative 5' to 3' DNA helicase implicated in DNA repair |
| RA | 1,927,068 | T→C | Y591C (TAC→TGC) | ptrB ← | oligopeptidase B |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,981,454 | (T)6→7 | coding (159/1425 nt) | otsA ← | trehalose‑6‑phosphate synthase |
| RA | 2,038,915 | T→C | intergenic (‑92/‑41) | hprR ← / → yedX | DNA‑binding transcriptional dual regulator HprR/hydroxyisourate hydrolase/transthyretin‑related protein |
| RA | 2,055,267 | (C)6→7 | coding (207/1455 nt) | amn → | AMP nucleosidase |
| RA | 2,057,676 | (C)7→6 | intergenic (+102/+351) | yeeN → / ← asnW | putative transcriptional regulator YeeN/tRNA‑Asn |
| RA | 2,058,786 | G→A | T354I (ACC→ATC) | yeeO ← | FMN/FAD exporter |
| RA | 2,135,590 | A→C | G21G (GGT→GGG) | wzc ← | protein‑tyrosine kinase Wzc |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,185,875 | (G)7→8 | intergenic (‑79/‑42) | rcnR ← / → rcnA | DNA‑binding transcriptional repressor RcnR/Ni(2(+))/Co(2(+)) exporter |
| RA | 2,208,573 | (C)6→7 | coding (607/1137 nt) | yehP → | VWA domain‑containing protein YehP |
| RA | 2,245,037 | T→C | D578G (GAC→GGC) | cirA ← | ferric dihyroxybenzoylserine outer membrane transporter |
| RA | 2,281,654 | T→C | G341G (GGT→GGC) | radD → | putative DNA repair helicase RadD |
| RA | 2,288,561 | (C)7→8 | pseudogene (354/2525 nt) | yejO ← | adhesin‑like autotransporter YejO |
| RA | 2,306,423 | G→A | A111V (GCA→GTA) | mqo ← | malate:quinone oxidoreductase |
| RA | 2,338,174 | T→C | Q416R (CAG→CGG) | gyrA ← | DNA gyrase subunit A |
| RA | 2,372,484 | A→G | N526S (AAC→AGC) | arnT → | lipid IVA 4‑amino‑4‑deoxy‑L‑arabinosyltransferase |
| RA | 2,414,396 | C→T | R309R (CGC→CGT) | ackA → | acetate kinase |
| RA | 2,432,759 | T→C | T62A (ACC→GCC) | folC ← | bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,458,416 | T→C | E248E (GAA→GAG) | fadJ ← | 3‑hydroxyacyl‑CoA dehydrogenase FadJ |
| RA | 2,462,889 | (C)9→10 | intergenic (+243/‑123) | fadL → / → yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| RA | 2,511,736 | A→G | L324P (CTG→CCG) | mntH ← | Mn(2(+))/Fe(2(+)): H(+) symporter MntH |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,528,455 | G→A | S574S (AGC→AGT) | ligA ← | DNA ligase |
| RA | 2,571,434 | G→A | C106C (TGC→TGT) | eutE ← | putative aldehyde dehydrogenase, ethanolamine utilization protein |
| RA | 2,577,767 | T→C | N204S (AAC→AGC) | maeB ← | malate dehydrogenase |
| JC | 2,602,017 | (C)7→10 | coding (200/2019 nt) | hyfB → | hydrogenase 4 component B |
| RA | 2,620,297 | G→A | Y192Y (TAC→TAT) | upp ← | uracil phosphoribosyltransferase |
| RA | 2,620,907 | (A)8→9 | intergenic (‑35/‑290) | upp ← / → purM | uracil phosphoribosyltransferase/phosphoribosylformylglycinamide cyclo‑ligase |
| RA | 2,630,207 | T→C | V139A (GTG→GCG) | yfgH → | lipoprotein YfgH |
| RA | 2,638,691 | T→C | Q198R (CAG→CGG) | yfgM ← | ancillary SecYEG translocon subunit |
| RA | 2,641,969 | T→C | A292A (GCA→GCG) | rodZ ← | transmembrane component of cytoskeleton |
| RA | 2,672,246 | G→A | W67* (TGG→TAG) | hcaD → | putative 3‑phenylpropionate/cinnamate dioxygenase ferredoxin reductase subunit |
| RA | 2,688,029 | G→A | P259S (CCG→TCG) | glrR ← | DNA‑binding transcriptional activator GlrR |
| RA | 2,704,509 | T→C | G267G (GGA→GGG) | lepB ← | signal peptidase I |
| RA | 2,715,394 | A→G | intergenic (‑74/‑29) | yfiE ← / → eamB | putative LysR‑type DNA‑binding transcriptional regulator YfiE/cysteine/O‑acetylserine exporter EamB |
| RA | 2,723,268 | A→G | D181G (GAC→GGC) | pssA → | phosphatidylserine synthase |
| RA | 2,747,954 | A→G | intergenic (‑159/‑8) | ffh ← / → ypjD | signal recognition particle protein component/cytochrome c assembly family protein |
| JC | 2,767,445 | (C)7→10 | intergenic (+90/‑265) | rnlB → / → yfjP | CP4‑57 prophage; antitoxin RnlB/CP4‑57 prophage; putative GTP‑binding protein YfjP |
| RA | 2,768,019 | T→C | Y104H (TAT→CAT) | yfjP → | CP4‑57 prophage; putative GTP‑binding protein YfjP |
| RA | 2,778,930 | (C)6→7 | coding (3797/4581 nt) | ypjA ← | adhesin‑like autotransporter YpjA |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,824,478 | (C)6→7 | intergenic (‑132/+13) | pncC ← / ← mltB | NMN aminohydrolase/membrane‑bound lytic murein transglycosylase B |
| RA | 2,841,806 | A→G | T273A (ACG→GCG) | ascB → | 6‑phospho‑beta‑glucosidase AscB |
| RA | 2,847,474 | G→A | R590W (CGG→TGG) | hycC ← | formate hydrogenlyase subunit HycC |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,884,953 | G→T | A756D (GCC→GAC) | cas3 ← | CRISPR‑associated endonuclease/helicase Cas3 |
| RA | 2,901,604 | A→G | Y338C (TAC→TGC) | yqcE → | putative transport protein YqcE |
| RA | 2,924,974 | T→C | T103A (ACC→GCC) | syd ← | SecY‑interacting protein |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 3,009,574 | A→G | T271A (ACC→GCC) | ygeY → | putative peptidase YgeY |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,074,643 | T→C | Y16C (TAC→TGC) | yggC ← | P‑loop NTPase domain‑containing protein YggC |
| RA | 3,076,546 | A→G | V304A (GTC→GCC) | yggP ← | putative zinc‑binding dehydrogenase YggP |
| RA | 3,096,970 | +A | coding (290/594 nt) | rdgB → | dITP/XTP pyrophosphatase |
| RA | 3,119,166 | T→C | intergenic (‑54/+431) | yghJ ← / ← glcA | putative lipoprotein YghJ/glycolate/lactate:H(+) symporter GlcA |
| RA | 3,136,101 | T→G | T91P (ACC→CCC) | pitB ← | metal phosphate:H(+) symporter PitB |
| RA | 3,138,494 | Δ1 bp | coding (29/1860 nt) | gss ← | fused glutathionylspermidine amidase/glutathionylspermidine synthetase |
| RA | 3,213,013 | A→G | intergenic (+161/‑34) | dnaG → / → rpoD | DNA primase/RNA polymerase, sigma 70 (sigma D) factor |
| RA | 3,221,621 | C→T | A52A (GCC→GCT) | ebgR → | DNA‑binding transcriptional repressor EbgR |
| RA | 3,253,881 | (A)5→4 | coding (334/897 nt) | yhaJ ← | DNA‑binding transcriptional activator YhaJ |
| RA | 3,270,488 | (C)7→8 | noncoding (105/377 nt) | rnpB ← | RNase P catalytic RNA component |
| RA | 3,271,805 | T→C | intergenic (‑35/+62) | garK ← / ← garR | glycerate 2‑kinase 1/tartronate semialdehyde reductase |
| RA | 3,303,065 | T→C | C193R (TGT→CGT) | yhbV → | putative peptidase YhbV |
| RA | 3,342,107 | (G)6→7 | coding (842/987 nt) | kdsD → | D‑arabinose 5‑phosphate isomerase KdsD |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,373,657 | T→C | intergenic (‑81/+41) | nanA ← / ← nanR | N‑acetylneuraminate lyase/DNA‑binding transcriptional dual regulator NanR |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,410,337 | A→G | I20V (ATT→GTT) | dusB → | tRNA‑dihydrouridine synthase B |
| RA | 3,420,850 | A→G | L239L (CTA→CTG) | yhdX → | putative ABC transporter membrane subunit YhdX |
| RA | 3,421,841 | (G)5→4 | coding (517/1104 nt) | yhdY → | putative ABC transporter membrane subunit YhdY |
| RA | 3,431,645 | (G)5→4 | coding (318/543 nt) | yrdD ← | putative DNA topoisomerase |
| RA | 3,461,922 | T→C | V152A (GTC→GCC) | gspH → | Type II secretion system protein GspH |
| RA | 3,462,844 | (G)6→5 | coding (501/588 nt) | gspJ → | Type II secretion system protein GspJ |
| RA | 3,495,416 | T→C | V469A (GTA→GCA) | nirB → | nitrite reductase catalytic subunit NirB |
| RA | 3,513,370 | T→C | Q90R (CAG→CGG) | trpS ← | tryptophan‑‑tRNA ligase |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,658,278 | G→A | intergenic (‑224/‑88) | arrS ← / → gadE | small regulatory RNA ArrS/DNA‑binding transcriptional activator GadE |
| RA | 3,750,580 | G→A | A165A (GCG→GCA) | sgbE → | L‑ribulose‑5‑phosphate 4‑epimerase SgbE |
| RA | 3,795,673 | (G)5→6 | coding (745/1047 nt) | waaF → | ADP‑heptose‑‑LPS heptosyltransferase 2 |
| RA | 3,815,783 | T→C | intergenic (‑15/+80) | pyrE ← / ← rph | orotate phosphoribosyltransferase/truncated RNase PH |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,846,817 | G→A | G117G (GGC→GGT) | uhpT ← | hexose‑6‑phosphate:phosphate antiporter |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,905,015 | T→C | K195E (AAA→GAA) | bglF ← | beta‑glucoside specific PTS enzyme II/BglG kinase/BglG phosphatase |
| RA | 3,957,643 | C→T | A60T (GCG→ACG) | ilvY ← | DNA‑binding transcriptional dual regulator IlvY |
| RA | 4,012,504 | T→C | T105A (ACA→GCA) | metR ← | DNA‑binding transcriptional dual regulator MetR |
| RA | 4,060,280 | (T)9→8 | intergenic (+50/‑167) | bipA → / → yihL | ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL |
| RA | 4,180,135 | A→G | E47G (GAA→GGA) | rplJ → | 50S ribosomal subunit protein L10 |
| RA | 4,187,132 | G→A | A595T (GCG→ACG) | rpoC → | RNA polymerase subunit beta' |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,348,424 | A→G | G107G (GGT→GGC) | dcuB ← | anaerobic C4‑dicarboxylate transporter DcuB |
| RA | 4,359,603 | Δ1 bp | coding (429/1335 nt) | cadB ← | lysine:cadaverine antiporter |
| RA | 4,377,958 | T→C | V329V (GTA→GTG) | ampC ← | beta‑lactamase |
| RA | 4,397,392 | T→C | L443P (CTG→CCG) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,412,538 | (T)6→5 | coding (152/639 nt) | yjfM → | DUF1190 domain‑containing protein YjfM |
| RA | 4,429,216 | (A)6→7 | coding (282/621 nt) | fklB → | FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB |
| RA | 4,439,105 | T→C | N53S (AAC→AGC) | ytfJ ← | protein YtfJ |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,455,326 | A→G | V95A (GTC→GCC) | fbp ← | fructose‑1,6‑bisphosphatase 1 |
| RA | 4,479,598 | T→C | intergenic (‑61/‑132) | yjgM ← / → yjgN | putative acetyltransferase YjgM/conserved inner membrane protein YjgN |
| RA | 4,505,662 | Δ1 bp | coding (376/1119 nt) | yjhC → | KpLE2 phage‑like element; putative oxidoreductase YjhC |
| RA | 4,505,976 | (G)5→6 | coding (690/1119 nt) | yjhC → | KpLE2 phage‑like element; putative oxidoreductase YjhC |
| RA | 4,538,189 | C→T | D193N (GAT→AAT) | nanM ← | N‑acetylneuraminate mutarotase |
| RA | 4,561,358 | A→G | R143R (AGA→AGG) | kptA → | RNA 2'‑phosphotransferase |
| RA | 4,567,801 | A→G | V240A (GTG→GCG) | mdtM ← | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| RA | 4,589,056 | (T)7→8 | coding (24/204 nt) | yjiX ← | conserved protein YjiX |
| RA | 4,606,094 | (G)8→9 | noncoding (72/87 nt) | leuV ← | tRNA‑Leu |
| RA | 4,606,331 | A→G | noncoding (71/87 nt) | leuQ ← | tRNA‑Leu |
| RA | 4,630,406 | A→C | G39G (GGT→GGG) | ettA ← | energy‑dependent translational throttle protein EttA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 780894–780898 | 781160–781153 | 256–267 | 31 [27] | [26] 30 | [lysW]–[lysY] | [lysW],valZ,[lysY] |
| * | * | ÷ | NC_000913 | 3423759–3424234 | 3424527–3424239 | 6–769 | 30 [29] | [28] 31 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 4037509–4038688 | 4039293–4038729 | 42–1785 | 30 [29] | [29] 34 | [rrlA] | [rrlA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 10 (0.100) | 149 (1.710) | 79/244 | 0.0 | 94.7% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 8 (0.090) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 10 (0.100) | 81 (0.930) | 52/244 | 0.3 | 90.6% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 8 (0.090) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 105 (1.100) | 63/268 | 0.2 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 177 (1.800) | 140 (1.430) | 79/274 | 0.0 | 60.6% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 6 (0.060) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 101 (1.030) | 62/276 | 0.3 | 97.1% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.030) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||