mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 7,713 | C→A | A83S (GCT→TCT) | yaaJ ← | putative transporter YaaJ |
| RA | 31,527 | C→A | F237L (TTC→TTA) | carB → | carbamoyl phosphate synthetase subunit beta |
| RA | 35,400 | C→A | D255Y (GAT→TAT) | caiD ← | crotonobetainyl‑CoA hydratase |
| RA | 51,892 | G→T | A180D (GCC→GAC) | rsmA ← | 16S rRNA m(6)2A1518,m(6)2A1519 dimethyltransferase |
| RA | 80,367 | C→A | M166I (ATG→ATT) | leuC ← | 3‑isopropylmalate dehydratase subunit LeuC |
| RA | 83,714 | C→A | intergenic (‑6/‑654) | leuL ← / → leuO | leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO |
| RA | 92,024 | G→T | P204P (CCG→CCT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 94,294 | G→T | A377S (GCG→TCG) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
| RA | 102,290 | C→A | L20M (CTG→ATG) | ddlB → | D‑alanine‑‑D‑alanine ligase B |
| RA | 131,516 | C→A | intergenic (‑256/‑99) | yacH ← / → acnB | DUF3300 domain‑containing protein YacH/hypothetical protein |
| RA | 131,569 | G→T | intergenic (‑309/‑46) | yacH ← / → acnB | DUF3300 domain‑containing protein YacH/hypothetical protein |
| RA | 147,151 | G→T | D62Y (GAC→TAC) | rpnC → | recombination‑promoting nuclease RpnC |
| RA | 150,831 | G→T | S41S (TCC→TCA) | yadC ← | fimbrial tip‑adhesin YadC |
| RA | 155,025 | G→T | I134I (ATC→ATA) | htrE ← | putative fimbrial usher protein HtrE |
| RA | 157,851 | A→G | F426L (TTC→CTC) | pcnB ← | poly(A) polymerase I |
| RA | 163,722 | G→T | G540C (GGC→TGC) | hrpB → | putative ATP‑dependent RNA helicase HrpB |
| RA | 171,824 | G→T | A121A (GCG→GCT) | fhuB → | iron(III) hydroxamate ABC transporter membrane subunit |
| RA | 177,462 | G→T | P55T (CCG→ACG) | yadS ← | conserved inner membrane protein YadS |
| RA | 205,377 | G→T | L84L (CTG→CTT) | dnaE → | DNA polymerase III subunit alpha |
| RA | 214,351 | C→A | Q21K (CAG→AAG) | yaeQ → | uncharacterized protein YaeQ |
| RA | 230,858 | G→T | L8L (CTC→CTA) | yafC ← | putative LysR family transcriptional regulator YafC |
| RA | 233,752 | C→A | K68N (AAG→AAT) | mltD ← | membrane‑bound lytic murein transglycosylase D |
| RA | 235,184 | G→T | L123L (CTG→CTT) | yafS → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 237,429 | C→A | A32D (GCT→GAT) | yafT → | lipoprotein YafT |
| RA | 238,152 | G→A | intergenic (+32/+105) | yafT → / ← ykfM | lipoprotein YafT/uncharacterized protein YkfM |
| RA | 244,109 | G→T | E189D (GAG→GAT) | lpcA → | D‑sedoheptulose 7‑phosphate isomerase |
| RA | 248,985 | G→T | pseudogene (1086/1713 nt) | lfhA ← | flagellar system protein, promoterless fragment |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 269,189 | G→T | intergenic (‑229/+100) | ykfA ← / ← perR | CP4‑6 prophage; putative GTP‑binding protein YkfA/putative transcriptional regulator PerR |
| RA | 269,754 | G→T | L143L (CTC→CTA) | perR ← | putative transcriptional regulator PerR |
| RA | 271,571 | G→T | R323R (CGG→CGT) | insI‑1 → | IS30 transposase |
| RA | 281,031 | C→A | G318V (GGG→GTG) | yagA ← | CP4‑6 prophage; integrase core domain‑containing protein YagA |
| RA | 283,350 | C→A | A50A (GCC→GCA) | yagF → | CP4‑6 prophage; D‑xylonate dehydratase |
| RA | 284,596 | G→T | V466L (GTA→TTA) | yagF → | CP4‑6 prophage; D‑xylonate dehydratase |
| RA | 286,228 | C→A | G278G (GGC→GGA) | yagG → | putative D‑xylonate transporter YagG |
| RA | 286,452 | G→T | S353I (AGC→ATC) | yagG → | putative D‑xylonate transporter YagG |
| RA | 287,001 | C→A | G71G (GGC→GGA) | yagH → | CP4‑6 prophage; putative xylosidase/arabinosidase |
| RA | 293,471 | C→A | E150* (GAG→TAG) | yagL ← | CP4‑6 prophage; resolvase‑like catalytic domain‑containing protein YagL |
| RA | 305,693 | C→A | L375L (CTG→CTT) | ecpD ← | fimbrial adhesin EcpD |
| RA | 308,482 | G→T | A284D (GCC→GAC) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 340,879 | G→T | E239* (GAA→TAA) | yahI → | carbamate kinase‑like protein YahI |
| RA | 353,810 | C→A | P369T (CCG→ACG) | prpE → | propionyl‑CoA synthetase |
| RA | 354,948 | G→A | Q9Q (CAG→CAA) | codB → | cytosine transporter |
| RA | 364,437 | G→T | H623Q (CAC→CAA) | lacZ ← | beta‑galactosidase |
| RA | 368,563 | C→A | intergenic (‑143/‑48) | mhpR ← / → mhpA | DNA‑binding transcriptional activator MhpR/putative 3‑(3‑hydroxyphenyl)propanoate/3‑hydroxycinnamate hydroxylase |
| RA | 380,146 | C→A | G233C (GGT→TGT) | yaiO ← | outer membrane protein YaiO |
| RA | 390,146 | C→A | intergenic (‑419/‑105) | hemB ← / → yaiT | porphobilinogen synthase/putative autotransporter YaiT |
| RA | 402,172 | G→T | L142L (CTG→CTT) | phoA → | alkaline phosphatase |
| RA | 415,950 | C→A | V335L (GTA→TTA) | sbcD ← | ATP dependent, structure specific DNA nuclease ‑ SbcD subunit |
| RA | 429,195 | G→T | A517S (GCG→TCG) | secD → | Sec translocon accessory complex subunit SecD |
| RA | 429,482 | G→T | K612N (AAG→AAT) | secD → | Sec translocon accessory complex subunit SecD |
| RA | 431,143 | C→A | G291C (GGT→TGT) | tsx ← | nucleoside‑specific channel‑forming protein Tsx |
| RA | 434,183 | C→A | R243R (CGC→CGA) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| RA | 436,977 | C→A | P130Q (CCG→CAG) | pgpA → | phosphatidylglycerophosphatase A |
| RA | 444,851 | C→A | Q57K (CAG→AAG) | yajQ → | nucleotide binding protein |
| RA | 453,438 | C→A | Q36H (CAG→CAT) | ampG ← | muropeptide:H(+) symporter |
| RA | 453,594 | G→T | R192S (CGT→AGT) | yajG ← | putative lipoprotein YajG |
| RA | 459,610 | C→A | L241L (CTC→CTA) | lon → | Lon protease |
| RA | 483,348 | G→T | F352L (TTC→TTA) | acrB ← | multidrug efflux pump RND permease AcrB |
| RA | 485,860 | C→A | L34M (CTG→ATG) | acrR → | DNA‑binding transcriptional repressor AcrR |
| RA | 495,508 | C→A | A130E (GCG→GAG) | htpG → | chaperone protein HtpG |
| RA | 500,138 | G→T | G5V (GGT→GTT) | gsk → | inosine/guanosine kinase |
| RA | 512,156 | C→A | A172A (GCC→GCA) | glsA → | glutaminase 1 |
| RA | 515,074 | G→T | R234S (CGC→AGC) | qmcA ← | PHB domain‑containing protein |
| RA | 524,757 | G→T | L499L (CTG→CTT) | rhsD → | protein RhsD |
| RA | 534,093 | G→T | G60C (GGT→TGT) | gcl → | glyoxylate carboligase |
| RA | 537,063 | G→T | G160C (GGC→TGC) | glxR → | tartronate semialdehyde reductase 2 |
| RA | 548,783 | G→T | D143Y (GAT→TAT) | ylbE → | DUF1116 domain‑containing protein YlbE |
| RA | 566,245 | G→T | pseudogene (117/264 nt) | exoD ← | DLP12 prophage; putative exonuclease ExoD |
| RA | 586,374 | G→T | L179I (CTC→ATC) | envY ← | DNA‑binding transcriptional activator EnvY |
| RA | 601,449 | C→A | I912I (ATC→ATA) | cusA → | copper/silver export system RND permease |
| RA | 602,118 | C→A | P54T (CCG→ACG) | pheP → | phenylalanine:H(+) symporter PheP |
| RA | 605,314 | G→T | S37R (AGC→AGA) | nfsB ← | NAD(P)H nitroreductase NfsB |
| RA | 607,689 | G→T | intergenic (‑306/‑45) | ybdK ← / → sokE | carboxylate‑amine ligase/small RNA SokE |
| RA | 620,401 | G→T | A263E (GCA→GAA) | fepG ← | ferric enterobactin ABC transporter membrane subunit FepG |
| RA | 633,676 | C→A | Q31K (CAG→AAG) | ybdL → | methionine‑oxo‑acid transaminase, PLP‑dependent |
| RA | 637,053 | G→T | T189N (ACT→AAT) | ybdO ← | putative LysR family DNA‑binding transcriptional regulator YbdO |
| RA | 654,798 | C→A | A391S (GCG→TCG) | dcuC ← | anaerobic C4‑dicarboxylate transporter DcuC |
| RA | 660,075 | C→A | D48Y (GAC→TAC) | lipA ← | lipoyl synthase |
| RA | 660,409 | C→A | intergenic (‑193/+16) | lipA ← / ← ybeF | lipoyl synthase/putative LysR‑type DNA‑binding transcriptional regulator YbeF |
| RA | 683,821 | G→T | H198N (CAC→AAC) | rihA ← | pyrimidine‑specific ribonucleoside hydrolase RihA |
| RA | 709,281 | G→T | K316N (AAG→AAT) | chiP → | chitobiose outer membrane channel |
| RA | 710,592 | G→T | R19S (CGT→AGT) | fur ← | DNA‑binding transcriptional dual regulator Fur |
| RA | 711,133 | C→A | P111P (CCG→CCT) | fldA ← | flavodoxin 1 |
| RA | 720,218 | G→T | V81V (GTC→GTA) | speF ← | ornithine decarboxylase, degradative |
| RA | 729,562 | C→A | intergenic (+222/‑21) | ybfA → / → rhsC | DUF2517 domain‑containing protein YbfA/rhs element protein RhsC |
| RA | 729,808 | C→A | R76S (CGC→AGC) | rhsC → | rhs element protein RhsC |
| RA | 731,365 | G→T | E595* (GAA→TAA) | rhsC → | rhs element protein RhsC |
| RA | 742,050 | C→A | M169I (ATG→ATT) | dtpD ← | dipeptide:H(+) symporter DtpD |
| RA | 744,002 | C→A | P137Q (CCG→CAG) | pxpB → | 5‑oxoprolinase component B |
| RA | 747,861 | G→T | intergenic (‑92/+60) | abrB ← / ← ybgO | putative regulator/putative fimbrial protein YbgO |
| RA | 753,875 | G→T | F198L (TTC→TTA) | gltA ← | citrate synthase |
| RA | 764,442 | C→A | A88E (GCA→GAA) | sucD → | succinyl‑CoA synthetase subunit alpha |
| RA | 766,404 | G→T | A141S (GCG→TCG) | mngA → | 2‑O‑alpha‑mannosyl‑D‑glycerate specific PTS enzyme II |
| RA | 782,216 | G→T | M44I (ATG→ATT) | nadA → | quinolinate synthase |
| RA | 796,755 | G→T | G68C (GGT→TGT) | modC → | molybdate ABC transporter ATP binding subunit |
| RA | 801,271 | C→A | T171T (ACC→ACA) | ybhH → | putative isomerase YbhH |
| RA | 803,877 | G→T | P125P (CCG→CCT) | ybhJ → | putative hydratase YbhJ |
| RA | 805,442 | C→A | A647E (GCG→GAG) | ybhJ → | putative hydratase YbhJ |
| RA | 812,883 | C→A | P205H (CCC→CAC) | bioD → | dethiobiotin synthetase |
| RA | 822,058 | G→T | T147T (ACC→ACA) | ybhN ← | conserved inner membrane protein YbhN |
| RA | 822,835 | G→C | T302R (ACA→AGA) | clsB ← | cardiolipin synthase B |
| RA | 832,481 | G→T | A157D (GCT→GAT) | ybiA ← | N‑glycosidase YbiA |
| RA | 839,929 | C→A | V535F (GTT→TTT) | fiu ← | putative iron siderophore outer membrane transporter |
| RA | 842,492 | C→A | A54E (GCG→GAG) | rlmF → | 23S rRNA m(6)A1618 methyltransferase |
| RA | 850,720 | G→T | G91C (GGT→TGT) | ompX → | outer membrane protein X |
| RA | 851,280 | C→A | D440Y (GAT→TAT) | opgE ← | phosphoethanolamine transferase |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 895,847 | C→A | S286* (TCG→TAG) | potG → | putrescine ABC transporter ATP binding subunit |
| RA | 929,362 | C→A | R534L (CGC→CTC) | cydD ← | glutathione/L‑cysteine ABC exporter subunit CydD |
| RA | 931,944 | G→T | T36N (ACC→AAC) | trxB ← | thioredoxin reductase |
| RA | 938,650 | G→T | A219A (GCG→GCT) | rarA → | recombination factor |
| RA | 948,861 | G→T | I236I (ATC→ATA) | ycaN ← | putative LysR‑type transcriptional regulator YcaN |
| RA | 951,898 | C→A | G553C (GGT→TGT) | pflB ← | pyruvate formate‑lyase |
| RA | 952,118 | G→T | R479R (CGC→CGA) | pflB ← | pyruvate formate‑lyase |
| RA | 953,891 | C→A | A192A (GCG→GCT) | focA ← | formate channel FocA |
| RA | 954,667 | C→A | intergenic (‑201/+205) | focA ← / ← ycaO | formate channel FocA/ribosomal protein S12 methylthiotransferase accessory factor YcaO |
| RA | 958,963 | G→T | R51L (CGC→CTC) | aroA → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| RA | 959,135 | G→T | L108L (CTG→CTT) | aroA → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| RA | 960,051 | C→A | P414T (CCG→ACG) | aroA → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| RA | 964,264 | C→A | intergenic (+152/‑56) | ihfB → / → ycaI | integration host factor subunit beta/conserved inner membrane protein YcaI |
| RA | 982,472 | G→T | A476S (GCC→TCC) | ldtD → | L,D‑transpeptidase LdtD |
| RA | 990,842 | G→T | W74L (TGG→TTG) | pepN → | aminopeptidase N |
| RA | 1,005,609 | G→T | R281L (CGC→CTC) | pyrD → | dihydroorotate dehydrogenase, type 2 |
| RA | 1,010,866 | G→T | V301V (GTG→GTT) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,011,436 | G→T | L491F (TTG→TTT) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,031,320 | G→T | A33A (GCC→GCA) | yccA ← | modulator of FtsH protease |
| RA | 1,035,812 | C→A | L15M (CTG→ATG) | hyaD → | putative hydrogenase 1 maturation protease HyaD |
| RA | 1,039,335 | C→A | L14M (CTG→ATG) | appB → | cytochrome bd‑II ubiquinol oxidase subunit II |
| RA | 1,050,622 | G→A | intergenic (+92/+341) | insB‑4 → / ← cspH | IS1 protein InsB/CspA family protein CspH |
| RA | 1,061,110 | G→T | E619* (GAG→TAG) | torA → | trimethylamine N‑oxide reductase 1 |
| RA | 1,072,686 | C→A | A60S (GCG→TCG) | rutB ← | peroxyureidoacrylate/ureidoacrylate amidohydrolase |
| RA | 1,090,550 | C→A | A580A (GCG→GCT) | pgaA ← | partially deacetylated poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine outer membrane porin |
| RA | 1,091,722 | C→A | E190* (GAG→TAG) | pgaA ← | partially deacetylated poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine outer membrane porin |
| RA | 1,096,932 | C→A | intergenic (+103/+633) | ycdU → / ← serX | uncharacterized protein YcdU/tRNA‑Ser |
| RA | 1,097,681 | G→T | intergenic (‑29/‑205) | serX ← / → ghrA | tRNA‑Ser/glyoxylate/hydroxypyruvate reductase A |
| RA | 1,099,875 | G→T | R79L (CGT→CTT) | ycdY → | chaperone protein YcdY |
| RA | 1,101,564 | G→T | H41N (CAT→AAT) | csgG ← | curli secretion channel |
| RA | 1,102,321 | G→T | T74N (ACT→AAT) | csgE ← | curli transport specificity factor |
| RA | 1,102,882 | G→T | N105K (AAC→AAA) | csgD ← | DNA‑binding transcriptional dual regulator CsgD |
| RA | 1,104,052 | G→T | A34A (GCG→GCT) | csgB → | curlin, minor subunit |
| RA | 1,109,595 | G→T | M87I (ATG→ATT) | opgG → | osmoregulated periplasmic glucans (OPGs) biosynthesis protein G |
| RA | 1,111,156 | G→T | P98P (CCG→CCT) | opgH → | osmoregulated periplasmic glucans (OPGs) biosynthesis protein H |
| RA | 1,118,048 | C→A | Q143H (CAG→CAT) | yceI ← | protein YceI |
| RA | 1,118,680 | C→A | G123C (GGC→TGC) | yceJ ← | putative cytochrome b561 |
| RA | 1,131,020 | G→T | M1M (ATG→ATT) † | flgB → | flagellar basal‑body rod protein FlgB |
| RA | 1,133,946 | C→A | L49I (CTT→ATT) | flgF → | flagellar basal‑body rod protein FlgF |
| RA | 1,135,275 | G→T | G183W (GGG→TGG) | flgG → | flagellar basal‑body rod protein FlgG |
| RA | 1,139,017 | G→T | G214C (GGT→TGT) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,183,490 | G→T | T44N (ACC→AAC) | potC ← | spermidine preferential ABC transporter membrane subunit PotC |
| RA | 1,192,119 | C→A | L171L (CTG→CTT) | hflD ← | lysogenization regulator |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,229,904 | C→A | S164I (AGC→ATC) | hlyE ← | hemolysin E |
| RA | 1,232,159 | C→A | A325D (GCT→GAT) | umuC → | DNA polymerase V catalytic protein |
| RA | 1,238,641 | G→T | M357I (ATG→ATT) | dadA → | D‑amino acid dehydrogenase |
| RA | 1,239,274 | C→A | G132G (GGC→GGA) | dadX → | alanine racemase 2 |
| RA | 1,250,718 | G→T | P41T (CCT→ACT) | dhaK ← | dihydroxyacetone kinase subunit K |
| RA | 1,274,373 | G→T | W197L (TGG→TTG) | ychO → | putative invasin YchO |
| RA | 1,316,465 | G→T | A253E (GCG→GAG) | trpA ← | tryptophan synthase subunit alpha |
| RA | 1,319,732 | G→T | A19A (GCC→GCA) | trpC ← | fused indole‑3‑glycerol phosphate synthase/phosphoribosylanthranilate isomerase |
| RA | 1,320,760 | G→T | Q209K (CAG→AAG) | trpD ← | anthranilate synthase subunit TrpD |
| RA | 1,347,773 | C→A | E380D (GAG→GAT) | rnb ← | RNase II |
| RA | 1,350,622 | C→A | A140S (GCC→TCC) | fabI ← | enoyl‑[acyl‑carrier‑protein] reductase |
| RA | 1,351,219 | C→A | intergenic (‑180/+188) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD |
| RA | 1,359,414 | C→A | intergenic (‑73/+76) | ymjE ← / ← puuA | protein YmjE/glutamate‑putrescine ligase |
| RA | 1,361,760 | C→A | P214H (CCT→CAT) | puuD → | gamma‑glutamyl‑gamma‑aminobutyrate hydrolase |
| RA | 1,364,669 | C→A | R146R (CGC→CGA) | puuB → | gamma‑glutamylputrescine oxidase |
| RA | 1,373,627 | G→T | G136C (GGC→TGC) | ycjO → | putative ABC transporter membrane subunit YcjO |
| RA | 1,389,683 | G→T | G252W (GGG→TGG) | ycjG → | L‑Ala‑D/L‑Glu epimerase |
| RA | 1,401,775 | G→T | intergenic (‑2/+35) | abgT ← / ← abgB | p‑aminobenzoyl glutamate:H(+) symporter/p‑aminobenzoyl‑glutamate hydrolase subunit B |
| RA | 1,412,098 | C→A | G380W (GGG→TGG) | intR ← | Rac prophage; putative integrase |
| RA | 1,415,946 | C→A | G481W (GGG→TGG) | recE ← | Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific |
| RA | 1,439,233 | C→A | A518S (GCA→TCA) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,440,658 | C→A | G43C (GGC→TGC) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,459,527 | G→T | G158G (GGG→GGT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase |
| RA | 1,472,049 | C→A | pseudogene (1531/3495 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| RA | 1,516,109 | C→A | P178T (CCG→ACG) | patD → | gamma‑aminobutyraldehyde dehydrogenase |
| RA | 1,536,036 | G→T | T194T (ACC→ACA) | narV ← | nitrate reductase Z subunit gamma |
| RA | 1,540,430 | C→A | G721C (GGC→TGC) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,540,576 | G→T | A672D (GCC→GAC) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,552,210 | C→A | intergenic (+219/+188) | fdnI → / ← yddM | formate dehydrogenase N subunit gamma/putative DNA‑binding transcriptional regulator YddM |
| RA | 1,555,939 | G→T | H9N (CAT→AAT) | sra ← | 30S ribosomal subunit protein S22 |
| RA | 1,611,118 | C→A | R246L (CGT→CTT) | dgcF ← | putative diguanylate cyclase DgcF |
| RA | 1,620,221 | C→A | intergenic (+14/+17) | marB → / ← eamA | multiple antibiotic resistance protein/cysteine/O‑acetylserine exporter EamA |
| RA | 1,620,753 | C→A | V129L (GTG→TTG) | eamA ← | cysteine/O‑acetylserine exporter EamA |
| RA | 1,639,199 | G→T | A110D (GCC→GAC) P46T (CCG→ACG) |
rzpQ ← rzoQ ← |
Qin prophage; DUF2514 domain‑containing protein RzpQ Qin prophage; putative lipoprotein RzoQ |
| RA | 1,654,082 | G→T | P354T (CCG→ACG) | rspA ← | mandelate racemase/muconate lactonizing enzyme family protein RspA |
| RA | 1,656,007 | G→T | R67L (CGC→CTC) | ynfB → | DUF1283 domain‑containing protein YnfB |
| RA | 1,666,940 | G→T | L94I (CTC→ATC) | ynfK ← | putative dethiobiotin synthetase |
| RA | 1,668,590 | C→A | intergenic (‑26/+109) | mlc ← / ← ynfL | DNA‑binding transcriptional repressor Mlc/putative DNA‑binding transcriptional regulator |
| RA | 1,672,861 | C→G | V97L (GTC→CTC) | mdtI ← | multidrug/spermidine efflux pump membrane subunit MdtI |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,687,146 | G→T | P411Q (CCG→CAG) | fumA ← | fumarase A |
| RA | 1,700,171 | C→A | Q273K (CAA→AAA) | malX → | PTS enzyme IIBC component MalX |
| RA | 1,702,202 | G→T | intergenic (+73/‑31) | malY → / → add | negative regulator of MalT activity/cystathionine beta‑lyase/adenosine deaminase |
| RA | 1,704,512 | C→A | intergenic (‑204/‑39) | ydgJ ← / → blr | putative oxidoreductase YdgJ/beta‑lactam resistance protein |
| RA | 1,715,551 | C→A | P113P (CCG→CCT) | pdxY ← | pyridoxal kinase 2 |
| RA | 1,721,115 | G→T | A31S (GCG→TCG) | ydhI → | DUF1656 domain‑containing protein YdhI |
| RA | 1,725,732 | G→T | R63R (CGC→CGA) | ydhL ← | conserved protein YdhL |
| RA | 1,731,633 | C→G | N849K (AAC→AAG) | lhr → | putative ATP‑dependent helicase Lhr |
| RA | 1,737,142 | G→A | A50V (GCA→GTA) | ydhP ← | putative transporter YdhP |
| RA | 1,737,816 | C→A | intergenic (‑271/‑28) | ynhF ← / → purR | stress response membrane protein YnhF/DNA‑binding transcriptional repressor PurR |
| RA | 1,738,845 | C→A | G334G (GGC→GGA) | purR → | DNA‑binding transcriptional repressor PurR |
| RA | 1,748,651 | G→T | T507T (ACG→ACT) | ydhS → | FAD/NAD(P) binding domain‑containing protein YdhS |
| RA | 1,786,808 | G→T | P102H (CCT→CAT) | ppsA ← | phosphoenolpyruvate synthetase |
| RA | 1,810,978 | G→T | L15L (CTG→CTT) | tcyP → | cystine/sulfocysteine:cation symporter |
| RA | 1,815,884 | C→A | A673E (GCG→GAG) | katE → | catalase II |
| RA | 1,831,404 | C→A | Q193H (CAG→CAT) | astC ← | succinylornithine transaminase |
| RA | 1,833,808 | C→A | T136T (ACC→ACA) | ydjX → | DedA family protein YdjX |
| RA | 1,834,658 | G→T | P181P (CCG→CCT) | ydjY → | 4Fe‑4S ferredoxin‑type domain‑containing protein YdjY |
| RA | 1,843,481 | G→T | A371S (GCG→TCG) | gdhA → | glutamate dehydrogenase |
| RA | 1,844,764 | G→T | A36A (GCC→GCA) | ynjI ← | DUF1266 domain‑containing protein YnjI |
| RA | 1,853,608 | C→A | M124I (ATG→ATT) | ydjE ← | putative transporter YdjE |
| RA | 1,872,190 | T→C | F50F (TTT→TTC) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,885,920 | C→A | L26M (CTG→ATG) | yeaX → | carnitine monooxygenase subunit YeaX |
| RA | 1,901,553 | C→A | A11A (GCG→GCT) | yoaE ← | putative inner membrane protein |
| RA | 1,906,405 | G→T | P219Q (CCG→CAG) | rlmA ← | 23S rRNA m(1)G745 methyltransferase |
| RA | 1,909,124 | C→A | P67Q (CCG→CAG) | yobH → | protein YobH |
| RA | 1,909,663 | G→T | A146E (GCG→GAG) | kdgR ← | DNA‑binding transcriptional repressor KdgR |
| RA | 1,932,177 | C→A | A194S (GCG→TCG) | eda ← | KHG/KDPG aldolase |
| RA | 1,938,540 | C→A | R298S (CGT→AGT) | pykA → | pyruvate kinase II |
| RA | 1,942,365 | C→A | Q73H (CAG→CAT) | znuA ← | Zn(2(+)) ABC transporter periplasmic binding protein |
| RA | 1,947,067 | C→A | A104S (GCA→TCA) | ruvC ← | crossover junction endodeoxyribonuclease RuvC |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,994,191 | C→A | G172G (GGG→GGT) | uvrC ← | excision nuclease subunit C |
| RA | 1,998,875 | C→T | L202L (CTG→CTA) | dcyD ← | D‑cysteine desulfhydrase |
| RA | 2,004,452 | C→A | S194* (TCG→TAG) | fliD → | flagellar filament capping protein |
| RA | 2,017,968 | C→A | A8E (GCG→GAG) | fliJ → | flagellar biosynthesis protein FliJ |
| RA | 2,022,865 | C→A | L84M (CTG→ATG) | fliQ → | flagellar biosynthesis protein FliQ |
| RA | 2,028,701 | C→A | L222F (TTG→TTT) | yedI ← | conserved inner membrane protein YedI |
| RA | 2,029,806 | G→T | E90* (GAA→TAA) | yedA → | putative transporter YedA |
| RA | 2,037,957 | G→T | P66T (CCT→ACT) | hprS ← | sensory histidine kinase HprS |
| RA | 2,050,545 | G→T | G1870C (GGT→TGT) | yeeJ → | inverse autotransporter adhesin |
| RA | 2,068,788 | C→A | pseudogene (154/306 nt) | yoeA → | CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA |
| RA | 2,091,585 | G→T | P163P (CCG→CCT) | hisD → | histidinal/histidinol dehydrogenase |
| RA | 2,092,728 | G→T | G111C (GGC→TGC) | hisC → | histidinol‑phosphate aminotransferase |
| RA | 2,094,525 | G→T | G353V (GGA→GTA) | hisB → | imidazoleglycerol‑phosphate dehydratase/histidinol‑phosphatase |
| RA | 2,120,829 | G→T | T242T (ACC→ACA) | wcaJ ← | undecaprenyl‑phosphate glucose phosphotransferase |
| RA | 2,123,025 | C→A | intergenic (‑46/+59) | cpsG ← / ← cpsB | phosphomannomutase/mannose‑1‑phosphate guanylyltransferase |
| RA | 2,126,359 | C→A | D278Y (GAT→TAT) | fcl ← | GDP‑L‑fucose synthase |
| RA | 2,136,902 | G→T | S114R (AGC→AGA) | wza ← | outer membrane polysaccharide export protein Wza |
| RA | 2,139,597 | C→A | intergenic (+112/+162) | yegH → / ← asmA | inner membrane protein YegH/putative assembly protein AsmA |
| RA | 2,140,635 | C→A | S326S (TCG→TCT) | asmA ← | putative assembly protein AsmA |
| RA | 2,157,867 | C→A | L869M (CTG→ATG) | mdtB → | multidrug efflux pump RND permease subunit MdtB |
| RA | 2,160,183 | G→T | G600C (GGC→TGC) | mdtC → | multidrug efflux pump RND permease subunit MdtC |
| RA | 2,165,292 | C→A | S35* (TCA→TAA) | yegP → | DUF1508 domain‑containing protein YegP |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,180,084 | G→T | G422W (GGG→TGG) | yegT → | putative transporter YegT |
| RA | 2,185,030 | C→A | S91I (AGC→ATC) | thiM ← | hydroxyethylthiazole kinase |
| RA | 2,190,155 | C→A | Q252H (CAG→CAT) | yehB ← | putative fimbrial usher protein YehB |
| RA | 2,197,614 | C→A | intergenic (+316/‑2665) | yehF → / → yehI | putative protein YehF/DUF4132 domain‑containing protein YehI |
| RA | 2,233,055 | G→T | G60C (GGC→TGC) | sanA → | DUF218 domain‑containing protein SanA |
| RA | 2,260,516 | G→T | L299I (CTC→ATC) | fruA ← | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| RA | 2,267,177 | C→A | F311L (TTC→TTA) | yeiQ → | putative dehydrogenase, NAD‑dependent |
| RA | 2,267,575 | C→A | A444D (GCC→GAC) | yeiQ → | putative dehydrogenase, NAD‑dependent |
| RA | 2,280,276 | C→A | G70C (GGC→TGC) | rsuA ← | 16S rRNA pseudouridine(516) synthase |
| RA | 2,282,132 | G→T | G501C (GGC→TGC) | radD → | putative DNA repair helicase RadD |
| RA | 2,291,925 | G→T | G162G (GGC→GGA) | ccmH ← | holocytochrome c synthetase ‑ thiol:disulfide oxidoreductase CcmH |
| RA | 2,305,506 | G→T | Q417K (CAA→AAA) | mqo ← | malate:quinone oxidoreductase |
| RA | 2,307,377 | C→A | L413L (CTG→CTT) | yojI ← | ABC transporter family protein/microcin J25 efflux protein |
| RA | 2,308,412 | C→A | S68S (TCG→TCT) | yojI ← | ABC transporter family protein/microcin J25 efflux protein |
| RA | 2,313,744 | C→A | S86Y (TCC→TAC) | rcsD → | RcsD phosphotransferase |
| RA | 2,321,479 | G→T | R479R (CGG→CGT) | atoS → | sensory histidine kinase AtoS |
| RA | 2,323,977 | G→T | L177L (CTG→CTT) | atoD → | acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha |
| RA | 2,342,926 | C→A | G415V (GGC→GTC) | yfaL ← | putative autotransporter adhesin YfaL |
| RA | 2,348,571 | C→A | P20T (CCT→ACT) | yfaE → | ferredoxin‑like diferric‑tyrosyl radical cofactor maintenance protein YfaE |
| RA | 2,358,557 | G→T | P97T (CCG→ACG) | yfaU ← | 2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| RA | 2,360,580 | C→A | G279C (GGC→TGC) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,362,685 | C→A | A317S (GCC→TCC) | yfaY ← | IPR008135 CinA family protein YfaY |
| RA | 2,364,101 | C→A | G59C (GGT→TGT) | yfaZ ← | putative porin YfaZ |
| RA | 2,369,610 | G→T | P524P (CCG→CCT) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| RA | 2,371,042 | C→A | S45S (TCC→TCA) | arnT → | lipid IVA 4‑amino‑4‑deoxy‑L‑arabinosyltransferase |
| RA | 2,373,188 | G→T | G99G (GGG→GGT) | arnF → | undecaprenyl‑phosphate‑alpha‑L‑Ara4N flippase ‑ ArnF subunit |
| RA | 2,378,088 | C→A | S391I (AGC→ATC) | menD ← | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase |
| RA | 2,379,773 | C→A | D291Y (GAT→TAT) | menF ← | isochorismate synthase MenF |
| RA | 2,381,441 | G→T | P35T (CCT→ACT) | elaA ← | putative N‑acetyltransferase ElaA |
| RA | 2,387,455 | G→T | intergenic (+18/+255) | yfbM → / ← yfbN | DUF1877 domain‑containing protein YfbM/uncharacterized protein YfbN |
| RA | 2,392,703 | C→A | Q113H (CAG→CAT) | nuoM ← | NADH:quinone oxidoreductase subunit M |
| RA | 2,394,378 | C→A | L223L (CTG→CTT) | nuoL ← | NADH:quinone oxidoreductase subunit L |
| RA | 2,411,285 | C→A | R23I (AGA→ATA) | yfbS ← | putative transporter YfbS |
| RA | 2,412,050 | G→T | L14M (CTG→ATG) | hxpA ← | hexitol phosphatase A |
| RA | 2,421,126 | G→T | W169L (TGG→TTG) | yfcG → | disulfide reductase |
| RA | 2,422,882 | C→A | G220W (GGG→TGG) | rpnB ← | recombination‑promoting nuclease RpnB |
| RA | 2,424,291 | G→T | R73R (CGC→CGA) | hisP ← | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit |
| RA | 2,437,347 | C→A | D169Y (GAT→TAT) | pdxB ← | erythronate‑4‑phosphate dehydrogenase |
| RA | 2,439,467 | G→T | I218I (ATC→ATA) | yfcJ ← | putative transporter YfcJ |
| RA | 2,443,681 | C→A | P640T (CCG→ACG) | mnmC → | fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,449,995 | C→A | A19S (GCT→TCT) | yfcO ← | DUF2544 domain‑containing protein YfcO |
| RA | 2,450,884 | C→A | V64V (GTG→GTT) | yfcQ ← | putative fimbrial protein YfcQ |
| RA | 2,484,593 | G→T | D74Y (GAT→TAT) | evgS → | sensory histidine kinase EvgS |
| RA | 2,489,823 | C→A | G122C (GGT→TGT) | yfdV ← | putative transport protein YfdV |
| RA | 2,493,524 | G→T | intergenic (‑270/+243) | frc ← / ← yfdX | formyl‑CoA transferase/protein YfdX |
| RA | 2,499,366 | C→A | C232* (TGC→TGA) | ypdA → | sensory histidine kinase YpdA |
| RA | 2,505,238 | C→A | E104* (GAG→TAG) | ypdE ← | broad‑specificity exoaminopeptidase |
| RA | 2,509,514 | C→A | intergenic (‑88/‑116) | glk ← / → yfeO | glucokinase/putative transport protein YfeO |
| RA | 2,518,871 | C→A | A20D (GCT→GAT) | yfeD → | putative DNA‑binding transcriptional regulator YfeD |
| RA | 2,523,024 | G→T | A321E (GCA→GAA) | xapB ← | xanthosine:H(+) symporter XapB |
| RA | 2,539,504 | A→G | V27A (GTG→GCG) | cysM ← | cysteine synthase B |
| RA | 2,540,607 | G→T | H70N (CAC→AAC) | cysA ← | sulfate/thiosulfate ABC transporter ATP binding subunit |
| RA | 2,543,931 | C→A | A231A (GCG→GCT) | ucpA ← | putative oxidoreductase |
| RA | 2,555,739 | C→A | intergenic (‑11/+2) | eutK ← / ← eutL | putative structural protein, ethanolamine utilization microcompartment/putative structural protein, ethanolamine utilization microcompartment |
| RA | 2,560,851 | G→T | E199* (GAG→TAG) | yffL → | CPZ‑55 prophage; uncharacterized protein YffL |
| RA | 2,571,411 | C→A | G114V (GGC→GTC) | eutE ← | putative aldehyde dehydrogenase, ethanolamine utilization protein |
| RA | 2,587,746 | G→T | G51V (GGC→GTC) | acrD → | multidrug efflux pump RND permease AcrD |
| RA | 2,609,668 | C→A | P394P (CCC→CCA) | hyfG → | hydrogenase 4 catalytic subunit HyfG |
| RA | 2,611,383 | C→A | T226T (ACC→ACA) | hyfI → | hydrogenase 4 catalytic subunit HyfI |
| RA | 2,635,711 | G→T | P35Q (CCA→CAA) | yfgJ ← | zinc ribbon domain‑containing protein YfgJ |
| RA | 2,660,551 | G→T | A327A (GCC→GCA) | iscS ← | cysteine desulfurase |
| RA | 2,662,341 | G→T | intergenic (‑210/+242) | iscR ← / ← trmJ | DNA‑binding transcriptional dual regulator IscR/tRNA Cm32/Um32 methyltransferase |
| RA | 2,667,286 | G→T | R187R (CGC→CGA) | hcaT ← | putative 3‑phenylpropionate transporter |
| RA | 2,667,603 | G→T | L82I (CTC→ATC) | hcaT ← | putative 3‑phenylpropionate transporter |
| RA | 2,670,155 | G→T | W375L (TGG→TTG) | hcaE → | putative 3‑phenylpropionate/cinnamate dioxygenase subunit alpha |
| RA | 2,672,017 | G→T | A265S (GCG→TCG) | hcaB → | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
| RA | 2,675,353 | C→A | E137* (GAA→TAA) | yphC ← | putative zinc‑binding dehydrogenase YphC |
| RA | 2,677,008 | C→A | A452S (GCC→TCC) | yphE ← | putative ABC transporter ATP‑binding protein YphE |
| RA | 2,689,088 | C→A | R140L (CGC→CTC) | qseG ← | outer membrane lipoprotein QseG |
| RA | 2,694,508 | C→A | E346* (GAA→TAA) | purL ← | phosphoribosylformylglycinamide synthetase |
| RA | 2,695,621 | C→A | intergenic (‑78/‑180) | purL ← / → mltF | phosphoribosylformylglycinamide synthetase/membrane‑bound lytic murein transglycosylase F |
| RA | 2,703,619 | G→T | P149T (CCA→ACA) | rnc ← | RNase III |
| RA | 2,708,988 | C→A | L139L (CTG→CTT) | rseA ← | anti‑sigma factor |
| RA | 2,714,194 | C→A | S433R (AGC→AGA) | srmB → | ATP‑dependent RNA helicase SrmB |
| RA | 2,720,344 | C→A | A131D (GCT→GAT) | patZ → | peptidyl‑lysine acetyltransferase |
| RA | 2,725,813 | G→T | intergenic (‑67/+256) | kgtP ← / ← rrfG | alpha‑ketoglutarate:H(+) symporter/5S ribosomal RNA |
| RA | 2,739,856 | C→A | E72* (GAG→TAG) | tyrA ← | fused chorismate mutase/prephenate dehydrogenase |
| RA | 2,776,951 | C→A | C25* (TGC→TGA) | ypjJ → | CP4‑57 prophage; DUF987 domain‑containing protein YpjJ |
| RA | 2,791,581 | C→A | A103A (GCC→GCA) | gabD → | NADP(+)‑dependent succinate‑semialdehyde dehydrogenase |
| RA | 2,808,449 | C→A | pseudogene (134/1178 nt) | ygaY → | putative transporter YgaY, N‑terminal fragment |
| RA | 2,813,757 | C→A | P381Q (CCG→CAG) | emrB → | multidrug efflux pump membrane subunit EmrB |
| RA | 2,821,852 | G→T | L54I (CTC→ATC) | alaS ← | alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor |
| RA | 2,834,627 | C→A | P239Q (CCG→CAG) | norW → | NADH:flavorubredoxin reductase |
| RA | 2,847,236 | G→T | A59A (GCC→GCA) | hycD ← | formate hydrogenlyase subunit HycD |
| RA | 2,868,229 | G→T | G175G (GGC→GGA) | nlpD ← | murein hydrolase activator NlpD |
| RA | 2,889,937 | G→T | H55N (CAC→AAC) | cysI ← | sulfite reductase, hemoprotein subunit |
| RA | 2,891,477 | G→T | P141Q (CCA→CAA) | cysJ ← | sulfite reductase, flavoprotein subunit |
| RA | 2,896,462 | C→A | D32Y (GAT→TAT) | ygcR ← | putative flavoprotein |
| RA | 2,904,135 | C→A | intergenic (+761/+612) | ygcE → / ← queE | putative sugar kinase YgcE/putative 7‑carboxy‑7‑deazaguanine synthase QueE |
| RA | 2,905,665 | G→T | D37Y (GAT→TAT) | yqcG → | cell envelope stress response protein YqcG |
| RA | 2,907,284 | C→A | A220S (GCT→TCT) | eno ← | enolase |
| RA | 2,910,067 | G→T | H207N (CAT→AAT) | mazG ← | nucleoside triphosphate pyrophosphohydrolase |
| RA | 2,914,360 | G→T | A214E (GCA→GAA) | rlmD ← | 23S rRNA m(5)U1939 methyltransferase |
| RA | 2,918,457 | G→T | P310Q (CCG→CAG) | gudD ← | D‑glucarate dehydratase |
| RA | 2,919,815 | G→T | A311D (GCC→GAC) | gudX ← | glucarate dehydratase‑related protein |
| RA | 2,923,153 | G→T | P211H (CCT→CAT) | truC ← | tRNA pseudouridine(65) synthase |
| RA | 2,942,008 | G→T | A187D (GCT→GAT) | gcvA ← | DNA‑binding transcriptional dual regulator GcvA |
| RA | 2,943,247 | C→A | intergenic (‑102/‑90) | ygdI ← / → csdA | DUF903 domain‑containing lipoprotein YgdI/cysteine sulfinate desulfinase |
| RA | 2,949,209 | C→A | intergenic (‑199/‑33) | amiC ← / → argA | N‑acetylmuramoyl‑L‑alanine amidase C/N‑acetylglutamate synthase |
| RA | 2,968,839 | C→A | E47* (GAG→TAG) | rppH ← | RNA pyrophosphohydrolase |
| RA | 2,970,684 | G→T | D89Y (GAT→TAT) | ygdQ → | UPF0053 inner membrane protein YgdQ |
| RA | 2,986,816 | G→T | G324C (GGT→TGT) | yqeG → | putative transporter YqeG |
| RA | 3,006,484 | C→A | R75S (CGC→AGC) | ygeW → | putative carbamoyltransferase YgeW |
| RA | 3,012,347 | C→A | A296E (GCG→GAG) | yqeA → | putative amino acid kinase YqeA |
| RA | 3,031,883 | G→T | G173C (GGT→TGT) | uacT → | urate:H(+) symporter |
| RA | 3,040,706 | G→T | P40T (CCG→ACG) | ygfX ← | protein YgfX |
| RA | 3,043,834 | G→T | G58V (GGA→GTA) | bglA → | 6‑phospho‑beta‑glucosidase A |
| RA | 3,043,887 | G→T | D76Y (GAC→TAC) | bglA → | 6‑phospho‑beta‑glucosidase A |
| RA | 3,054,283 | G→T | R186R (CGC→CGA) | pepP ← | proline aminopeptidase P II |
| RA | 3,054,775 | G→T | P22P (CCC→CCA) | pepP ← | proline aminopeptidase P II |
| RA | 3,059,554 | G→T | pseudogene (58/231 nt) | yqfE ← | conserved protein YqfE |
| RA | 3,075,430 | C→A | E251D (GAG→GAT) | yggF ← | fructose 1,6‑bisphosphatase YggF |
| RA | 3,075,796 | C→A | A129A (GCG→GCT) | yggF ← | fructose 1,6‑bisphosphatase YggF |
| RA | 3,089,555 | G→T | L424L (CTG→CTT) | galP → | galactose:H(+) symporter |
| RA | 3,089,989 | G→T | E79* (GAA→TAA) | yggI → | conserved protein YggI |
| RA | 3,091,547 | C→A | A138A (GCC→GCA) | rsmE → | 16S rRNA m(3)U1498 methyltransferase |
| RA | 3,096,891 | G→T | G71C (GGT→TGT) | rdgB → | dITP/XTP pyrophosphatase |
| RA | 3,115,928 | C→A | G1062V (GGA→GTA) | yghJ ← | putative lipoprotein YghJ |
| RA | 3,118,935 | G→C | P60A (CCT→GCT) | yghJ ← | putative lipoprotein YghJ |
| RA | 3,122,299 | G→T | Q503K (CAA→AAA) | glcB ← | malate synthase G |
| RA | 3,139,723 | C→A | S81I (AGC→ATC) | hybG ← | hydrogenase 2 accessory protein |
| RA | 3,150,149 | C→A | A163E (GCG→GAG) | yghA → | NADP(+)‑dependent aldehyde reductase |
| RA | 3,156,876 | C→A | P85H (CCC→CAC) | dkgA → | methylglyoxal reductase DkgA |
| RA | 3,171,273 | C→A | L264I (CTC→ATC) | qseC → | sensory histidine kinase QseC |
| RA | 3,181,261 | C→A | P281T (CCG→ACG) | ygiC → | putative enzyme with ATPase activity |
| RA | 3,202,092 | G→T | G68C (GGT→TGT) | cca → | fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase |
| RA | 3,217,945 | G→T | R378S (CGT→AGT) | aer ← | aerotaxis sensor receptor, flavoprotein |
| RA | 3,219,441 | C→A | intergenic (‑365/‑53) | aer ← / → patA | aerotaxis sensor receptor, flavoprotein/putrescine aminotransferase |
| RA | 3,219,701 | G→T | A70S (GCG→TCG) | patA → | putrescine aminotransferase |
| RA | 3,227,142 | G→T | W303C (TGG→TGT) | ygjI → | putative transporter YgjI |
| RA | 3,231,072 | C→A | L729M (CTG→ATG) | ygjK → | glycoside hydrolase |
| RA | 3,232,088 | G→T | D142Y (GAC→TAC) | fadH → | 2,4‑dienoyl‑CoA reductase |
| RA | 3,243,481 | G→T | R421S (CGT→AGT) | uxaC ← | D‑glucoronate/D‑galacturonate isomerase |
| RA | 3,270,175 | C→A | intergenic (+573/+41) | yhaC → / ← rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| RA | 3,270,969 | C→A | G268C (GGT→TGT) | garK ← | glycerate 2‑kinase 1 |
| RA | 3,288,425 | C→A | A112A (GCC→GCA) | yraI → | putative fimbrial chaperone YraI |
| RA | 3,322,484 | C→A | V8F (GTT→TTT) | secG ← | Sec translocon subunit SecG |
| RA | 3,329,074 | C→A | L38M (CTG→ATG) | dacB → | peptidoglycan DD‑endopeptidase DacB |
| RA | 3,345,580 | A→G | E288E (GAA→GAG) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| RA | 3,348,103 | C→A | A46A (GCC→GCA) | npr → | phosphorelay protein Npr |
| RA | 3,352,163 | G→T | S288Y (TCC→TAC) | arcB ← | sensory histidine kinase ArcB |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,355,867 | G→T | Q381H (CAG→CAT) | gltB → | glutamate synthase subunit GltB |
| RA | 3,372,764 | G→T | R271R (CGC→CGA) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,381,551 | G→T | G270V (GGC→GTC) | degQ → | periplasmic serine endoprotease |
| RA | 3,384,473 | G→T | intergenic (‑205/‑230) | mdh ← / → argR | malate dehydrogenase/DNA‑binding transcriptional dual regulator ArgR |
| RA | 3,408,306 | C→A | L234M (CTG→ATG) | panF → | pantothenate:Na(+) symporter |
| RA | 3,454,763 | C→A | E212D (GAG→GAT) | gspA ← | Type II secretion system protein GspA |
| RA | 3,465,252 | G→T | W57C (TGG→TGT) | gspM → | Type II secretion system protein GspM |
| RA | 3,469,513 | G→T | S114* (TCG→TAG) | chiA ← | endochitinase |
| RA | 3,479,030 | C→A | L526L (CTG→CTT) | kefB ← | K(+) : H(+) antiporter KefB |
| RA | 3,486,115 | C→A | intergenic (‑297/‑5) | yhfA ← / → crp | OsmC family protein/DNA‑binding transcriptional dual regulator CRP |
| RA | 3,491,835 | C→A | G155C (GGC→TGC) | ppiA ← | peptidyl‑prolyl cis‑trans isomerase A |
| RA | 3,497,064 | C→A | A21E (GCA→GAA) | nirC → | nitrite transporter NirC |
| RA | 3,497,937 | G→T | R37L (CGC→CTC) | cysG → | siroheme synthase |
| RA | 3,499,372 | C→A | intergenic (+171/‑76) | cysG → / → yhfL | siroheme synthase/DUF4223 domain‑containing lipoprotein YhfL |
| RA | 3,503,770 | G→T | D202Y (GAT→TAT) | frlD → | fructoselysine 6‑kinase |
| RA | 3,535,340 | G→T | L177M (CTG→ATG) | envZ ← | sensory histidine kinase EnvZ |
| RA | 3,541,735 | G→T | A443A (GCG→GCT) | feoB → | Fe(2(+)) transporter FeoB |
| RA | 3,545,026 | C→A | L49I (CTT→ATT) | yhgH → | DNA utilization protein YhgH |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,573,232 | G→T | Q91K (CAG→AAG) | glgB ← | 1,4‑alpha‑glucan branching enzyme |
| RA | 3,580,541 | C→A | G89W (GGG→TGG) | yhhX ← | putative oxidoreductase YhhX |
| RA | 3,592,763 | C→A | L225L (CTG→CTT) | livF ← | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| RA | 3,599,518 | G→T | T47T (ACC→ACA) | livJ ← | branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein |
| RA | 3,617,503 | C→A | I163I (ATC→ATA) | nikD → | Ni(2(+)) ABC transporter ATP binding subunit NikD |
| RA | 3,627,428 | C→A | R704L (CGC→CTC) | rbbA ← | ribosome‑associated ATPase |
| RA | 3,629,279 | G→T | P87Q (CCG→CAG) | rbbA ← | ribosome‑associated ATPase |
| RA | 3,645,155 | C→A | E10* (GAA→TAA) | prlC ← | oligopeptidase A |
| RA | 3,659,143 | C→A | intergenic (+61/‑89) | gadF → / → mdtE | small regulatory RNA GadF/multidrug efflux pump membrane fusion protein MdtE |
| RA | 3,677,840 | C→A | G171W (GGG→TGG) | yhjG ← | AsmA family protein YhjG |
| RA | 3,686,554 | G→T | R874R (CGA→AGA) | bcsC ← | cellulose biosynthesis protein BcsC |
| RA | 3,698,989 | C→A | P259Q (CCA→CAA) | bcsG → | cellulose phosphoethanolamine transferase |
| RA | 3,708,293 | C→A | intergenic (‑588/+323) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,715,525 | C→A | A290A (GCG→GCT) | bisC ← | biotin sulfoxide reductase |
| RA | 3,719,142 | C→A | intergenic (‑98/‑336) | yiaF ← / → yiaG | DUF3053 domain‑containing protein YiaF/putative DNA‑binding transcriptional regulator YiaG |
| RA | 3,739,739 | G→T | R12L (CGC→CTC) | avtA → | valine‑‑pyruvate aminotransferase |
| RA | 3,747,680 | G→T | L199L (CTG→CTT) | lyxK → | L‑xylulose kinase |
| RA | 3,754,492 | C→A | intergenic (‑64/+481) | yiaW ← / ← aldB | DUF3302 domain‑containing protein YiaW/aldehyde dehydrogenase B |
| RA | 3,810,634 | G→T | S173R (AGC→AGA) | mutM ← | DNA‑formamidopyrimidine glycosylase |
| RA | 3,812,882 | G→T | S51I (AGC→ATC) | dfp → | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,836,647 | C→A | intergenic (+331/‑306) | selC → / → setC | tRNA‑Sec/putative arabinose exporter |
| RA | 3,852,821 | G→T | intergenic (‑37/+69) | ilvB ← / ← ivbL | acetohydroxy acid synthase I subunit IlvB/ilvBN operon leader peptide |
| RA | 3,853,358 | G→T | intergenic (‑101/‑195) | istR ← / → tisB | small RNA IstR‑2/membrane‑depolarizing toxin TisB |
| RA | 3,857,812 | G→A | T198I (ACC→ATC) | yidJ ← | putative sulfatase/phosphatase |
| RA | 3,889,637 | G→T | G303V (GGC→GTC) | tnaA → | tryptophanase |
| RA | 3,897,131 | G→T | G120C (GGC→TGC) | yieH → | 6‑phosphogluconate phosphatase |
| RA | 3,904,749 | C→A | Q283H (CAG→CAT) | bglF ← | beta‑glucoside specific PTS enzyme II/BglG kinase/BglG phosphatase |
| RA | 3,927,192 | G→T | S13I (AGC→ATC) | asnA → | asparagine synthetase A |
| RA | 3,934,676 | G→T | G300V (GGC→GTC) | rbsA → | ribose ABC transporter ATP binding subunit |
| RA | 3,939,909 | C→A | S235I (AGC→ATC) | hsrA ← | putative transporter HsrA |
| RA | 3,946,226 | G→T | noncoding (2523/2904 nt) | rrlC → | 23S ribosomal RNA |
| RA | 3,951,284 | C→A | pseudogene (725/1645 nt) | ilvG → | acetolactate synthase II subunit IlvG, N‑terminal fragment (pseudogene) |
| RA | 3,956,411 | G→T | G361W (GGG→TGG) | ilvA → | threonine deaminase |
| RA | 3,964,684 | G→T | A316D (GCC→GAC) | rhlB ← | ATP‑dependent RNA helicase RhlB |
| RA | 3,973,142 | C→A | N207K (AAC→AAA) | rffG → | dTDP‑glucose 4,6‑dehydratase 2 |
| RA | 3,973,850 | C→A | P81P (CCC→CCA) | rffH → | dTDP‑glucose pyrophosphorylase 2 |
| RA | 3,979,233 | C→A | F211L (TTC→TTA) | wzyE → | enterobacterial common antigen polymerase |
| RA | 3,995,635 | G→T | R18L (CGG→CTG) | yigA → | conserved protein YigA |
| RA | 4,007,741 | C→A | intergenic (+48/‑16) | recQ → / → rhtC | ATP‑dependent DNA helicase RecQ/L‑threonine exporter |
| RA | 4,035,811 | G→T | noncoding (281/1542 nt) | rrsA → | 16S ribosomal RNA |
| RA | 4,047,707 | C→A | Q248K (CAG→AAG) | polA → | DNA polymerase I |
| RA | 4,054,697 | C→A | A194A (GCG→GCT) | glnG ← | DNA‑binding transcriptional dual regulator NtrC |
| RA | 4,061,216 | C→A | P18T (CCT→ACT) | yihM → | putative TIM barrel domain‑containing protein YihM |
| RA | 4,069,904 | C→A | V166V (GTG→GTT) | yihR ← | putative aldose 1‑epimerase YihR |
| RA | 4,094,938 | G→T | L349M (CTG→ATG) | rhaA ← | L‑rhamnose isomerase |
| RA | 4,100,835 | C→A | P9Q (CCG→CAG) | sodA → | superoxide dismutase (Mn) |
| RA | 4,113,756 | C→A | P239P (CCG→CCT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,133,316 | G→T | W234L (TGG→TTG) | metF → | 5,10‑methylenetetrahydrofolate reductase |
| RA | 4,138,141 | G→T | L299I (CTT→ATT) | gldA ← | L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase |
| RA | 4,141,196 | C→A | E342D (GAG→GAT) | ptsA ← | putative PTS multiphosphoryl transfer protein PtsA |
| RA | 4,150,741 | C→A | L786L (CTG→CTT) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,175,375 | C→A | intergenic (‑349/‑13) | coaA ← / → thrU | pantothenate kinase/tRNA‑Thr |
| RA | 4,183,798 | G→T | A852S (GCT→TCT) | rpoB → | RNA polymerase subunit beta |
| RA | 4,194,194 | G→T | P4H (CCT→CAT) | thiE ← | thiamine phosphate synthase |
| RA | 4,225,958 | G→T | G711W (GGG→TGG) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,263,253 | G→T | P327T (CCA→ACA) | qorA ← | putative quinone oxidoreductase 1 |
| RA | 4,265,940 | C→T | D53D (GAC→GAT) | alr → | alanine racemase 1 |
| RA | 4,270,342 | C→A | I35I (ATC→ATA) | yjbQ → | UPF0047 protein YjbQ |
| RA | 4,279,933 | C→G | intergenic (+105/‑47) | ghxP → / → yjcE | guanine/hypoxanthine transporter GhxP/putative transporter YjcE |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,309,977 | G→T | A335D (GCC→GAC) | alsA ← | D‑allose ABC transporter ATP binding subunit |
| RA | 4,320,740 | G→T | L170I (CTC→ATC) | phnH ← | carbon‑phosphorus lyase core complex subunit PhnH |
| RA | 4,324,701 | G→T | G155G (GGC→GGA) | phnC ← | phosphonate ABC transporter ATP binding subunit |
| RA | 4,326,253 | C→A | intergenic (‑512/+146) | yjdN ← / ← yjdM | conserved protein YjdN/conserved protein YjdM |
| RA | 4,337,675 | C→A | T85T (ACG→ACT) | adiY ← | DNA‑binding transcriptional activator AdiY |
| RA | 4,356,412 | G→T | intergenic (‑1/+58) | dtpC ← / ← cadA | dipeptide/tripeptide:H(+) symporter DtpC/lysine decarboxylase 1 |
| RA | 4,358,521 | T→C | I33V (ATT→GTT) | cadA ← | lysine decarboxylase 1 |
| RA | 4,361,266 | C→A | V223V (GTG→GTT) | cadC ← | DNA‑binding transcriptional activator CadC |
| RA | 4,362,098 | G→T | intergenic (‑164/+453) | cadC ← / ← pheU | DNA‑binding transcriptional activator CadC/tRNA‑Phe |
| RA | 4,364,660 | C→A | C128F (TGT→TTT) | dsbD ← | protein disulfide oxidoreductase ‑ DsbDreduced |
| RA | 4,364,787 | C→A | E86* (GAA→TAA) | dsbD ← | protein disulfide oxidoreductase ‑ DsbDreduced |
| RA | 4,372,597 | C→A | P525T (CCG→ACG) | groL → | chaperonin GroEL |
| RA | 4,381,573 | C→A | R249L (CGC→CTC) | frdA ← | fumarate reductase flavoprotein subunit |
| RA | 4,383,500 | C→A | A286A (GCC→GCA) | epmA → | EF‑P‑lysine lysyltransferase |
| RA | 4,387,485 | A→C | L629R (CTG→CGG) | mscM ← | miniconductance mechanosensitive channel MscM |
| RA | 4,426,293 | G→T | L62L (CTG→CTT) | rplI → | 50S ribosomal subunit protein L9 |
| RA | 4,456,746 | C→A | A321E (GCG→GAG) | mpl → | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| RA | 4,472,141 | C→A | K85N (AAG→AAT) | pyrB ← | aspartate carbamoyltransferase catalytic subunit |
| RA | 4,476,042 | G→T | Q202H (CAG→CAT) | yjgL → | protein YjgL |
| RA | 4,486,033 | C→A | intergenic (‑82/‑185) | pepA ← / → lptF | aminopeptidase A/I/lipopolysaccharide transport system protein LptF |
| RA | 4,502,521 | C→A | G304V (GGG→GTG) | insG ← | KpLE2 phage‑like element; IS4 putative transposase |
| RA | 4,509,976 | G→T | pseudogene (173/330 nt) | yjhV → | KpLE2 phage‑like element; putative uncharacterized protein YjhV |
| RA | 4,512,019 | G→T | T132T (ACC→ACA) | fecD ← | ferric citrate ABC transporter membrane subunit FecD |
| RA | 4,512,726 | G→T | A228A (GCC→GCA) | fecC ← | ferric citrate ABC transporter membrane subunit FecC |
| RA | 4,516,311 | C→A | G123C (GGT→TGT) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,527,038 | C→A | W167L (TGG→TTG) | sgcE ← | KpLE2 phage‑like element; putative epimerase SgcE |
| RA | 4,535,268 | C→A | pseudogene (254/1017 nt) | yjhR → | KpLE2 phage‑like element; PLD‑like domain‑containing protein YjhR |
| RA | 4,535,443 | C→A | pseudogene (429/1017 nt) | yjhR → | KpLE2 phage‑like element; PLD‑like domain‑containing protein YjhR |
| RA | 4,560,434 | C→A | A83S (GCG→TCG) | yjiH ← | Gate family protein YjiH |
| RA | 4,571,472 | C→A | E35* (GAG→TAG) | yjiR ← | fused putative DNA‑binding transcriptional regulator/putative aminotransferase YjiR |
| RA | 4,582,005 | C→A | Q348H (CAG→CAT) | hsdM ← | type I restriction enzyme EcoKI methyltransferase component |
| RA | 4,592,967 | C→A | S437R (AGC→AGA) | tsr → | methyl‑accepting chemotaxis protein Tsr |
| RA | 4,606,224 | C→A | noncoding (63/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,617,658 | G→T | A112A (GCG→GCT) | deoC → | deoxyribose‑phosphate aldolase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196270 | 1211433 | 15164 | 39 [34] | [34] 39 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |
| * | * | ÷ | NC_000913 | 3102949 | 3104052 | 1104 | 37 [34] | [36] 37 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423770–3424234 | 3424538–3424240 | 7–769 | 40 [35] | [36] 38 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 181 (1.460) | 94/270 | 0.0 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 219 (1.720) | 174 (1.370) | 78/276 | 0.1 | 61.0% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 5 (0.040) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 146 (1.140) | 75/278 | 0.1 | 94.2% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 9 (0.070) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | 4542682 = | 95 (0.740) | 37 (0.310) | 29/260 | 2.3 | 27.4% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 107 (0.900) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 95 (0.740) | 38 (0.320) | 26/260 | 2.6 | 28.0% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 107 (0.900) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||