mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 176,908 | C→A | P100Q (CCG→CAG) | erpA → | iron‑sulfur cluster insertion protein ErpA |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 552,641 | C→A | A154S (GCC→TCC) | purE ← | N(5)‑carboxyaminoimidazole ribonucleotide mutase |
| RA | 622,247 | G→T | intergenic (‑58/‑53) | fepD ← / → entS | ferric enterobactin ABC transporter membrane subunit FebD/enterobactin exporter EntS |
| RA | 858,282 | G→T | F260L (TTC→TTA) | ybiU ← | DUF1479 domain‑containing protein YbiU |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,278,153 | G→T | G66V (GGC→GTC) | narK → | nitrate:nitrite antiporter NarK |
| RA | 1,502,488 | C→A | A11D (GCT→GAT) | ydcL → | DUF3313 domain‑containing lipoprotein YdcL |
| RA | 1,520,236 | G→T | intergenic (+172/‑26) | curA → / → mcbR | NADPH‑dependent curcumin/dihydrocurcumin reductase/DNA‑binding transcriptional dual regulator McbR |
| RA | 1,542,316 | C→A | G92V (GGC→GTC) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,932,104 | C→T | intergenic (+45/+11) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase |
| RA | 1,942,030 | G→T | A185D (GCC→GAC) | znuA ← | Zn(2(+)) ABC transporter periplasmic binding protein |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,252,429 | C→A | L244M (CTG→ATG) | yeiI → | putative sugar kinase YeiI |
| RA | 2,286,879 | C→A | pseudogene (2036/2525 nt) | yejO ← | adhesin‑like autotransporter YejO |
| RA | 2,555,334 | G→T | A132D (GCC→GAC) | eutK ← | putative structural protein, ethanolamine utilization microcompartment |
| RA | 2,698,702 | C→A | intergenic (‑152/‑57) | pgpC ← / → yfhH | phosphatidylglycerophosphatase C/putative DNA‑binding transcriptional regulator YfhH |
| RA | 2,966,753 | C→A | S561I (AGC→ATC) | ptsP ← | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| RA | 3,067,165 | A→T | I3I (ATT→ATA) | ygfI ← | putative LysR‑type DNA‑binding transcriptional regulator YgfI |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,422,759 | C→A | N108K (AAC→AAA) | yhdZ → | putative ABC transporter ATP‑binding subunit YhdZ |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,920,441 | C→A | D150Y (GAT→TAT) | atpF ← | ATP synthase Fo complex subunit b |
| RA | 4,131,593 | C→A | H587N (CAC→AAC) | metL → | fused aspartate kinase/homoserine dehydrogenase 2 |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,332,933 | C→A | A114S (GCC→TCC) | basS ← | sensory histidine kinase BasS |
| RA | 4,497,700 | C→A | pseudogene (951/1191 nt) | intB → | KpLE2 phage‑like element; putative integrase |
| RA | 4,585,353 | G→T | A470E (GCG→GAG) | hsdR ← | type I restriction enzyme EcoKI endonuclease component |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102965 | 3104059 | 1095 | 18 [17] | [17] 18 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423785–3424234 | 3424530–3424241 | 8–746 | 20 [16] | [16] 18 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 67 (0.860) | 22 (0.320) | 20/244 | 1.9 | 24.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 79 (1.150) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 144 (1.910) | 72/268 | 0.0 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 126 (1.620) | 117 (1.520) | 63/274 | 0.1 | 65.0% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.010) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 88 (1.130) | 62/276 | 0.1 | 95.7% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 4 (0.050) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||