Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F9 I0 R1
|
105 |
139.1 |
2894862 |
97.5% |
2822490 |
224.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
989,945 |
A→G |
17.2% |
S138P (TCA→CCA) |
pncB ← |
nicotinate phosphoribosyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 989,945 | 0 | A | G | 17.2%
| 123.5
/ 2.5
| 71 | S138P (TCA→CCA) | pncB | nicotinate phosphoribosyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (24/32); new base G (7/6); total (32/39) |
| Fisher's exact test for biased strand distribution p-value = 5.45e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCATCGCCTG > NC_000913/989709‑990182
|
tCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGagc < 2:66118/239‑1 (MQ=255)
ccATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGagcga < 1:956577/239‑1 (MQ=255)
ccATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGagcga < 1:1240384/239‑1 (MQ=255)
cATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGagcgat < 2:4742/239‑1 (MQ=255)
tCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGagcgatag < 1:532502/239‑1 (MQ=255)
tCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGagcgatag < 1:675118/239‑1 (MQ=255)
ggCGTGAGGGAAAGCCGACGCGGCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGagcgatagcg < 1:800664/239‑1 (MQ=255)
cGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGagcgatggcga < 2:1266383/238‑1 (MQ=255)
cGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGTACCATTTCAc < 1:333845/238‑1 (MQ=255)
gATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCAACAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGAGCTATAGCGATGTACCATTTCAc < 1:190770/228‑1 (MQ=255)
gCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGGGGGCGGTAGCGATGTACCATTTCACTGATAACC‑GCCAGCaaaagga > 1:1288675/1‑235 (MQ=255)
gCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGGTAACGGCGAGAAGTGGACTAATTTGCTTTCCTGCGGGGCGGGGGGGTGGGCC‑ACC‑TCGGCCAGCGGAGGGCGATAGGCATGGAACATTTCTCTGATACAC‑Gccccggcactta > 2:190770/1‑229 (MQ=255)
gTGCCCACAAACAAGGATTCGTGTGGAAGACGCTTAACGAGGGTTTTTTGTACTTCGCGAAAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATACCAAGACCGGCGGTTACCCCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCGGCGGTGGGCGATAGCGATGTACCATTCCACGGATAACC‑GCCAGCAAAGGAACtt < 2:194986/238‑1 (MQ=255)
cccACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGACGACTAATTTTCTTTCCCGCGTGTCGGGGGGTTGCGCA‑ACC‑TCGGCCTGCGGGGAGCGGTAGCGATGTACCCTTTCACTGATAACC‑GCCCGCAAAGGAACTTcccc > 1:964644/1‑238 (MQ=255)
cacaAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCCGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCaga > 1:213677/1‑239 (MQ=255)
aaaccgggtctctggTTGCAGATGCTTACGTGTGGTTTGTGGTACACCGCGAGAAAACCGGCGCCGGGTGCCAAAACCCTCCAGATGGAACCGCGACATACCAAGCCCGGCGTTTCGCGCCGGGAGGGCGACTATTTTGCTTTCCCGCGTGTGGAGGGCTTGCAAA‑ACG‑TCGGCCTGCGGTGGGCGACGGAGATGTTCCATTGCCCGGATAGCC‑GCCAGCAAAGGAACTTCCCAGAGGa < 2:708095/225‑1 (MQ=255)
gctgccggttgagggcgtttacagATGGTTTCTTGTCCTTCTGAAGAAAAACGGGGACGGGTGCCAAAACACATAAGAGGGAGGCGTGACATATCAAGCCGGGGGGTTAACGCGGAGAAGGCAACAAATTGGCTTTCCGGCGTGTAGAGGGCTTGCGCA‑ACG‑TCGGCCTGGGGTGAGCAATAGCGATGTCCCATTTCACTGAAAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACtt < 2:689661/215‑1 (MQ=255)
ccTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAACCGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGCCCGGCGGTTACCGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGaa < 1:583861/216‑1 (MQ=255)
cTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGACGACTAATTTGCTTTCCCACGTGGCGAGGGGGTTCGCA‑ACG‑TCGGCCCGCGGGGAGCGATAGGGATGTACCATTTCCCTGATAACCACCCCGCAAGGAAATTCCCCAAAGGATGA‑TTCAcac > 1:1358054/1‑236 (MQ=255)
gTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAAGCCGCGAAGTCGACTAATTTGCTTTTCAGCGGGGCGGGGGGTTGCGCC‑ACG‑TCGGGCTGCGGTGAGCGGTAGCGATGTACCATTTTACTGATAACC‑GCCCGCAAAGGAACTTTCCAGAGGATGACTTCACGcccc > 1:501511/1‑237 (MQ=255)
aCGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAAGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGGGGGCTTGCGCA‑ACG‑TCGGCCCGCGGGGAGCGATAGGGGTGTAACCTTTCACTGATAACC‑CCCAGCAAAAGAACTTTCCCGAgggcggctcttatacacatctgt > 2:583861/1‑217 (MQ=255)
aCGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGGTAACGCCGAGAAGACGACTAATTTTGTTTCAAGCGTCTCGGGGGGTTGCGCC‑ACG‑TCGGCCTGCGGCGGGCGATAGCGCTGGAACATTTCCCAGGAAACA‑GCCAGCAAAAGGAAGTCCCAGGGGATGACTTTACCCCTCCGGccc > 2:1241610/1‑237 (MQ=255)
aCGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGGTAAAGCCGAGAAGTCGACTAATTTTCTTTTCAGCGTGTCGAGGGATTGCGCA‑ACG‑TACGCCTGCAGTGAGTGGTAGCGGTGGACCATTTTCCTGAGAACA‑CCCAGCCAAAGAAGTTTCCAGGGGAGAGCTTCACAcccacggccg > 2:605814/1‑230 (MQ=255)
tAACGATGGTTTCTTGTCCTCCGCGAGAAAACCGGGGACGGGTGCAAAAATCCATCAGGGGAAACCGCGACATATCAGGACCGGGGGTTACCGCCGAGAGGTCGACTAATTGGCTTTCCAGCGTGTGGAGGGCTTGCGCA‑ACG‑TCGGCCGGCGGTGAGCGATAGCGATGTACCATTTCACTGAAAGCC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTaaa < 2:1165655/239‑1 (MQ=255)
acggtggtttcgtagcgtcaccgAAAAAAACGTGGACGGGTCCCAAAACCCAGCAGTGGGAACCGCGACTAATCAGCGCCGGCGTTTACCCCCGAGATGTCGACTAATTTGCTTCCCGGGTGGTCGAGGGCTTGCCCA‑GCG‑TCGCCCGGGGGGGAGCGATAGGGATGTACCATTTCACTGAAAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAAc < 2:501511/217‑1 (MQ=255)
ggTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAATCGACTAAATTGCTTTCCAGCGTGTCGGGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGCTGGACCATTTCACTGATAAAC‑GCCAGCAAAGGAAATTCCCAGAGGATGACTTCACGCCACGGGCCGCCTAAACGaaaa > 1:1206731/1‑236 (MQ=255)
tttCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGGCGAATAATTTTCTTTCCAGCGGGTCGGGGGCTTGCGCA‑ACG‑TCGGCCCGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAAGAACATCCCCGAGGATGACTTCACGCCCACGGCCGCTTaaaagcaaaaa > 2:1274740/1‑230 (MQ=255)
tCTTGTACTTCGCGAGAAAACCGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCACGACCGGCGGTTAAAGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGCGGGGTTGCCCA‑AAGTTCGGCC‑ACGGGTAGCGATACGGGTGTACCATTTCTATGACAAAC‑GCCCCCAAAAGAACTTCCCCGACGAGAGCCTCCCGCCCCGGGCCggctacactaaactacc > 2:1326521/1‑222 (MQ=255)
cTTGTACTTCGCGAAAAAAACGGCGACGGGTGCAAAAACCCATCAGATGAAAGCGCGACATATCAAGACCGGCGTTTACCGCCGAGAATTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGAGGAATAGCGATGTCCCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGc < 1:71086/239‑1 (MQ=255)
ttGTACTTCGCGAGAAAAAGGGCGACGGGGGCCAAAATCCATCAGAGGGAAGCGCGACATATCAAGCCCGGGGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGGGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑t < 1:38408/239‑1 (MQ=255)
gggtctgggggagaAAAACGGGGGCGGGTGCAAAAACCCATAAAGGGGAAGCGTGACATAACAAGCCCGGCGGTTACCGCCGAGAAGTCGCCTTATTTGCTTCCCAGGGTGTGGGGGGTTTGCGCA‑CCG‑CCGGCCGGCGGGGGGCGATAGCGATGTCCCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑tt < 2:1162615/229‑1 (MQ=255)
ttCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAAAGCCCAGAAATCGACTAATTTGCTTTCCACCGTGTCGGGGGCTTGCGCA‑ACG‑CCGGCCCGCGGTGGGCGGTAGCGATGTTCCATTTCACCGATAAAC‑CCCCGCAAAGGAACTTACCACAGGAATACTTCACGCCACGGGGCCCTTAAACGAATATCCACC‑CTGccct > 2:719420/1‑237 (MQ=255)
tccgcgAAAAAAACGGGGGGGGGTCCAAAAATCCATAAGAGGAAAGCGCGACATAACAAGCCGGGCGGTTACCGCGGAGAATCCGACTAATTTGCTTTCCAGCGTGTAGAGGGTTGGCGAA‑CCG‑TCGCCCTGGGGGGAGAGATAGGGATGTCCCATTTCCCTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCAt < 2:1318142/237‑1 (MQ=255)
cgcgAGAAAAACGGCGACGGGTGCCAAAATCCATCAGTTGGAAGCGCGACATATCAAGACCGGCGGCTAAAGCCGAGAAATCTGCTAATTTGCTTTCCAGCGTGTAGAGGGCCTGCGGA‑ACC‑GCGGGCCGCGGTGTGCGAAAGCGATGTGCCCTTTTTCTCACAACA‑GCCCGCAAAGGGACTTGCCCGAGGATGTCATTACGCCACCCGCCCCCTTAAAGAATAACACAC‑TTGCCCTTa > 2:160932/1‑239 (MQ=255)
cgcgAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTTAAGCCGAGAAGTCGGCAAATTTGCTTTTCAAAGGGTCGCGGGATTGCGCC‑ACG‑TGGGCGTGCGGGGGGCGAAAGGGAGGTACCATTTCAATGATAACC‑GCCAGCAAAGGAACTTCCCCGAGGATGAGTTCACGCCACGGGCGCCGTAAACGaaactcccacatgcgatta > 2:588592/1‑222 (MQ=255)
cgcgAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGGGGCGAGGGCTTGCGCA‑ACG‑GCGGCCTGCGGTGAGCGGTAGCGAGGTACCATTTCACTGATAACC‑GCCCGCCAAAGAAATTCCCAGAGGATGACTTCACGCCCCGGGCCGCTTAAACGAATATACAGC‑TTTCCCTTa > 2:761944/1‑239 (MQ=255)
cgcgAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGGCGACTAATTTGCTTTCCAGCGTGTCGCGGGCTTTCGCC‑ACG‑GCGGCCTGCGGTGAGCGGTAGCGGTGTACCCTTTTACTGGTAACC‑GCCAGCAAAGGAACTTCCCCGAGGATGACTTTCCCCCACGGGCCGCCTAAAAGAATATCCCGC‑CTgtccttt > 2:1374695/1‑233 (MQ=255)
cgcgAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACCCCCAGAAGTCGACAAATTTGCTTTCAAACGTGCCGTAGGCTCGCGCA‑ACG‑TCCGCCTGCGCGCAGGCATAGCGGAGTTCCATTTCACCGATAACA‑CCCCGCCAAAGAACTTCCCCAAGGAGAACTTCCCCCCCCCGGCCGCGTAAAACAACATCCACCATTGCCAtt > 2:738154/1‑239 (MQ=255)
cgcgAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGCTAACGCCGGGCAGACGACTAATTTTATTTTCCGCGTGTCGGGGGCGTGCGCACACG‑‑CCGCCTGCGGTGGGCGCTAGCGATGTAGCATTTTTCTGATAAGC‑GCCCGCAAAGGAACTTCCCTGAGGCTGACTTCACGCCCCGAGCCGCTGTAAAGAAAATCCAAC‑CTGGCATTa > 2:1051256/1‑239 (MQ=255)
ggTGCCAAACACAAACAGAAGGAAGCGCGACATAGAAAGCCCGGCGGTTAACGCTGAGAATCCGACTAATTGCCTTTCCAGCGTGGGGAGGGCTGGGGAA‑ACG‑TGGGCCTGGGGAAAGGGATAGCAATGTCCCATTTCGCTAAAACCC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGAc < 2:1218247/237‑1 (MQ=255)
cgcgACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGGGTCGAGGGGTTGCGCA‑ACG‑GCGGCCTGCGGTGAGGGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGGACTTCCCAGAGGATGACTTCACGCCACGGGGCGCTTAAACCAATATc > 1:141332/1‑182 (MQ=255)
gACATATCAAGACCGGCGGTTTACGCCGGGAAGTCGACTAAATTGCTTTCCAGCGTGTCGAGGGCCTTCGCC‑ACG‑CCGGCCCGCGGTGAGCGAAAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGGACTTCCCCGAGGATGACTTCACCCCACGGGCCGCCTCAACGAATATCCCAC‑TTTCCATTATCGTGTTGCACGGGGGCTTTTTCCGGGGTAAAACGGGACTcgcgga > 2:1049122/1‑236 (MQ=255)
aaagtaccAAGACCGGGGGTTAACGCCGAGACGCCCACTATTTTGCTTTCGAGCGTGCCGAGGTCTTGCGAA‑ACG‑GCGCCCTGCGGTGTGGGATAGGGATGTCCCATTTCACTAATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTaa < 1:801429/232‑1 (MQ=255)
atCAAGACCGGCGGTTAACGCCGAGAAGTCGACTATTTTGCTTCCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGTCCCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGAt < 1:1260426/141‑1 (MQ=255)
ggggTTAGCGCGGAGAGGGCGACTAATTTGCTTTCCAGCGTGGGGGGGGCTTGCGCA‑CCG‑TCGGCGTGCGGGGGGGAATAGCGATGTACCATTTCACTGAAAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGt < 2:979529/236‑1 (MQ=255)
ggggTTAACGCCAAGAGGCGAACTAATTTTCTTTCATGTTTTTCGGGGTCTTGCTAA‑ACG‑TCGGCCGGCGGTGAGGGATAGCGATGTACCATTCCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGt < 2:1206731/236‑1 (MQ=255)
gcgttaaaCGCCGGAAATTGGACTATTTTGCTTCCAGGGGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGGGGTGAGCGATGGCGATGTACCATTTCACTAATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGt < 1:647794/232‑1 (MQ=255)
gcgtTTAACGCCGGTAAGTCGACTAATTTGCTTTCCGGCGTGTCGGGGCCTTGCGCA‑ACG‑TCGGCGTGCGTTGAGCGATAGCGATGTACCATTTCCCGGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGt < 1:767947/238‑1 (MQ=255)
gcggTTAACGCCGCGAAGTCGACTAATTTGCTTTCCAGCGGGTCGAGGGCTTGCGCC‑ACG‑TCGGCCTGCGGTGGGCGATAGCGATGTACCATTTCACTGATAAAC‑GCCAGCAAAGGAACTTCCCAGAGGGTGACTTCACGCCACCGGCCGCCTAAACGAAAATCCCGC‑TTGCCATTATCGTTGGACACGGGGACTTGTTTCGGGTTAAAAAGGAACTCTCGCAACAAGTGAAGATaatg > 2:530600/1‑236 (MQ=255)
cggttaaaggcggaaaggTCGACTAATTTGCTTTCCAGCGGGCGGGGGGCTGGCGAA‑AGG‑TGGGCCTGCGGGGAGCGATAGCGATGTCCCTTTCCACTGAAAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGt < 2:579767/221‑1 (MQ=255)
gggTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTc < 1:1374695/237‑1 (MQ=255)
cggTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGGGTCGAGGGCTTTCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGTACCATTTTACTTATAACC‑GCCAGCAAAAGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCCTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGGGACTTGTTTCCGGTTTAAGCGGGACTCCCCTAACCAGCTAATATTGTCg > 2:80632/1‑239 (MQ=255)
ggaaaagcggattagtttGCTTTCCGGGGTGTGGGGGCCTGGCGCA‑ACG‑GCGGCGTGCGGGGAGCGATAGCGATGTACCATTTCACTAATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTaaag < 2:1288675/223‑1 (MQ=255)
gaAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTaaagaaag > 2:362211/1‑239 (MQ=255)
aaGTCGACTATTTGCCTTTCCGGCGTTTCGAGGGGTTTGGCA‑ACG‑TGGGTCGGTGGTGAGCGATAGCGATGTCCCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAgg < 1:400397/239‑1 (MQ=255)
aaGTCGAATAATTGTGTTTCCGGCGTTTCGGGGGCTTGCGAA‑CCC‑CCGGTCTGCGGTTAGCGATAGCGATGTACCATTTCACTGAAAGCC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAgg < 1:918647/239‑1 (MQ=255)
aGTCTACTAATTTGCTTCCCAGCGTGTCGAGGGTTGGCGAA‑ACG‑CCGGCCGGCGTTGAGCGATAGCGATGTCCCATTTCCCGAATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAggc < 1:294285/239‑1 (MQ=255)
aCTAATTTGCTTTCCAGCGCGGCGAGGGCGTGCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGGCCCATTTCACTGATAACC‑GCCAGCTAAGGAACTTCCCAGAGGATGACTTCACGCCACGGTCCGCTTAAACGAATATCCGGC‑CTGCCTTTATCCTCGGACACGGTGAGTTGGTCCGGGTTAAACCGGAACTTGACTCACCAGTTTAGGAAGTGGGCCTTGACAGAAggcagggc > 2:1111617/1‑239 (MQ=255)
cTTTCCAGCGGGTCGGGGGCTTGCAAA‑ACG‑TGGGCCTGGGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCa < 1:605814/239‑1 (MQ=255)
tttCCGGCGGGTCGAGGGCTGGCGCA‑ACG‑TCGCCCGGGGGTGAGCGATAGCGATGTACCATTTCACGGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCa < 1:80632/238‑1 (MQ=255)
cAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGat < 1:362211/239‑1 (MQ=255)
gtgtAGAGCGCTTGGGCA‑GCG‑CGGCCCTGGGGTGAGGGATAGAGATGTACCTTTCCCCGGAAAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATAtt < 1:1324783/238‑1 (MQ=255)
tgtCGGGGTCTTGCGCA‑AGG‑TCGGCCTGCGGTGAGCGAGAGGGATGTGCCATTCCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATtc < 2:650234/238‑1 (MQ=255)
tgtCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATtca > 2:594722/1‑239 (MQ=255)
ttGCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCa > 2:291113/1‑239 (MQ=255)
gcgcA‑ACG‑TCGGCCTGGGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAgg < 1:325606/239‑1 (MQ=255)
gcgcA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAg > 1:634120/1‑238 (MQ=255)
gcA‑ACG‑CCGGCCTGCGGTGGGCGATAGCGATGTACCATTCCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGgcg < 1:1049122/239‑1 (MQ=255)
cG‑TCGGCCTGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGA‑TTGCAATTATCGTTGGACACGGTGACTTGTTCCGGGCTAAAGCTGAACTCGCGTAACCAGATAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCAATGATATTTATCATCCTGCATgctccgg > 2:1278089/1‑234 (MQ=255)
g‑TCGGCCTGCGGTGAGCTATAGCAATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGt < 1:849248/239‑1 (MQ=255)
cggccggcGGTGAGCGATACCGAGGTACCATTACACGAAAAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTAAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGtg < 1:1036121/238‑1 (MQ=255)
cggCGGAGGGCGATGGCGTTATCCCTTTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCa < 2:1170241/237‑1 (MQ=255)
cTGGGGTGAGCGATAGCGATGTACCATTTCACTAATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCa < 1:1241610/239‑1 (MQ=255)
cTGCGGTGAGCGATAGCGATGTCCCATTTCACTGAAAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGtgctgc < 1:761944/238‑1 (MQ=255)
tGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCa > 1:1011007/1‑238 (MQ=255)
cGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTaa < 1:1234413/156‑1 (MQ=255)
cGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTaa > 2:1234413/1‑156 (MQ=255)
cGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCATc > 2:1190366/1‑238 (MQ=255)
gAGCGATAGCGATGTACCATTGCACAGAAAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGACTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCATCGCCTg < 1:1051256/239‑1 (MQ=255)
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TCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAGAAAAACGGCGACGGGTGCCAAAATCCATCAGATGGAAGCGCGACATATCAAGACCGGCGGTTAACGCCGAGAAGTCGACTAATTTGCTTTCCAGCGTGTCGAGGGCTTGCGCA‑ACG‑TCGGCCTGCGGTGAGCGATAGCGATGTACCATTTCACTGATAACC‑GCCAGCAAAGGAACTTCCCAGAGGATGACTTCACGCCACGGGCCGCTTAAACGAATATCCAGC‑TTGCCATTATCGTTGGACACGGTGACTTGTTCCGGGTTAAAGCGGAACTCGCGTAACCAGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCATCGCCTG > NC_000913/989709‑990182
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
