Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F27 I0 R1
|
120 |
139.6 |
2835800 |
98.5% |
2793263 |
226.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
989,943 |
T→G |
26.5% |
S138S (TCA→TCC) ‡ |
pncB ← |
nicotinate phosphoribosyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 989,943 | 0 | T | G | 26.5%
| 96.7
/ 3.3
| 70 | S138S (TCA→TCC) ‡ | pncB | nicotinate phosphoribosyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (19/28); new base G (12/10); total (32/38) |
| Fisher's exact test for biased strand distribution p-value = 3.08e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCATC > NC_000913/989707‑990177
|
gtTCCCATCGGCGTGAGGGAAAGCTGACGCGCCAGATCGGTGTTGCTGGTGCCCACAAACCACGATTCCTGGTGCAGACGCTTAACGATGGTTTCTTGTACGTCGCGAG‑AAAAAC‑GGCGACGTGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTg < 2:783044/238‑1 (MQ=255)
gtTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTg < 2:932134/238‑1 (MQ=255)
ccATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGagcga < 2:1402452/239‑1 (MQ=255)
ccATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGagcga < 1:935805/239‑1 (MQ=255)
ccATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGagcga < 1:828783/239‑1 (MQ=255)
ccATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGagcga < 1:532474/239‑1 (MQ=255)
cATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGagcgat < 1:603600/239‑1 (MQ=255)
ggCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGagcgatagcg < 2:1226147/239‑1 (MQ=255)
gttaGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGAGCGATAGCGA‑Tg < 2:1268585/236‑1 (MQ=255)
tGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CACCG‑AG‑AAGGCGAATAATTTGATTT‑TCAGCGGGTCG‑GGGGGTTGGGCAACGTCCGGCTGCGGGGGGCGGAAGGGA‑Tgg > 1:1125113/1‑238 (MQ=255)
aaGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCC‑AG‑TAGTCGACTAAATTTCTTT‑CCAGCCGGTCG‑GAGGCTTTCGCGACGTTCGCCCGCGGTGtgcggcagccgtggaaccttt > 2:813415/1‑222 (MQ=255)
tgtGGGGCCCAAAAACCAGGATCCCGGTTGCAGACGCTTAACGATGGTTTCTTGTCCTTCGCAAG‑AAAAAC‑GGCGGCGGGTGCAAAAATCCATC‑AGATGGAAGCGCGACATATCAAGCCCGGCGGTA‑AA‑CGCGG‑AG‑AAGTCGATTATTTTGCTTT‑CCAGCGTGTCG‑GGGGTTTGCGCAACGTCGGCCTGCGGGGAGTGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGaa < 2:390814/237‑1 (MQ=255)
gCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACCAAATTGCTTT‑TCAACGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGaa > 1:625618/1‑239 (MQ=255)
cTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑AGCCG‑AG‑AAGTCGAATAAATTTCTTT‑TCCGCGTGTCG‑AGGGCTTTGGCAACGGCGGCCTGCGGGGAGCGGTAGGGA‑GGTACCCTTTTACTGATAACCCCCCGGCAAGGa > 2:564720/1‑237 (MQ=255)
ggTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑AGCCC‑AG‑GAGTCCACTAATTTTCTTT‑CCAGCGTGTCG‑CGGGCTTGCGCAACGTCGGCCTGCGGGGAGCGATAGCGA‑GGTACCATTTTACTGCTAACCGCCCGCAAAGGAACt > 1:270813/1‑238 (MQ=255)
cccACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑GG‑AAGTCGACTAATTTGCTTT‑CCAACGTGTCG‑CGGGGTTGCGCCACGGCGGCCCGCGGTGTGGGAGAGGGA‑TGTACCCTTTTACTGATAAACGCCAGCCCAGGAACttaca > 2:59910/1‑235 (MQ=255)
ccACAAACCAGGATTCCGTTGGAAGACGCTTAACGTTGGTTTCTTGGCCTGCGCGAG‑AAAAAC‑GGGGACGGGGGCAAAAATCCATC‑AGATGGAAGCGAGACATACCAAGACGGGGGGTT‑AA‑CGCCG‑AA‑AGGTCGACTAATTTGCTTT‑CCGGGGTGTCG‑GGGGCTTGCGAAACGTCGGCCTGGGGTGAGCGATAGCGA‑TGTACCATTTCACGGATAACCGCCAGCAAAGGAACTT‑CCCa < 2:694009/238‑1 (MQ=255)
aaCCAGAGTTCCGTTTGCAGACGTTAAACGATGTTTTTTTGTACTTGGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑GGGTGGAAGCGGGCCTTATCAAGACGGGCGGTT‑AA‑CGCGG‑AG‑AAGTCGATTATTTTGCTTT‑CCAGCGTGTCG‑GGGGTTTCGCCAACGTCGGCCGGCGGTGAGCGATAGCGA‑TGTCCCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAt < 2:534635/239‑1 (MQ=255)
aCCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑AGCCG‑GG‑AAGACGACTAATTTGCTTT‑CCCCCGGGTCG‑AGGGCTTGCGCCACGGCGGCCTGCGGTGGGCGGTAGCGA‑AGGAACATTTTACTGATAACCGCCAGCAAAGGAACTTGCCCAggggtg > 2:884123/1‑237 (MQ=255)
atgccTGGTGCAGTCTCTTAACGTTGGTTTTTTGTCCTCCGCGGG‑AAAACC‑GGCGGTGGGTGCCAAAACCCCAC‑AGAGGAAGGCGCGAAATATCAAGCCCGG‑GGTT‑AA‑ACCCG‑AGTAGGGCGATTAATGGGCTTT‑CTAGCGTGTCG‑CGGGTTTGCGAACCGCCGGCCTGCGTTGGGCGATAGGGA‑TTTACCATTCCACTCATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTc < 2:504532/235‑1 (MQ=255)
cTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑GGGGCTTGCGCAACGTCGGCCTGCGGGGAGCGATAGCGG‑TGGACCCTTTCAATGATAACCGCCAGCAAAGGGACTT‑TCCAGAGGAT‑GA‑CTTCACGc > 2:1288371/1‑238 (MQ=255)
aCGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAATCGACTAATTTGCTTT‑CCAGCGGGTCG‑AGGGCGTGCGCAACGTCGGCCTGCGGGGAGCGAAAGCGA‑TGTACCCTTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑GTTTCCGCCCCGGGCCg > 2:1267299/1‑238 (MQ=255)
ttACCGAGGTTTCCTTGTCCTTGGCGAG‑AAAAAG‑GGCGACGGGTGCAAAAATCCATC‑AGATGGAAGCGCGACATACAAAGACCGGCGGTT‑AC‑CGCCG‑AA‑AAGTCGACTATTTTGCTTC‑CCAGCGTGTGG‑AGGGCTTGCGAACCGTCGGCCGGCGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTa < 2:825562/238‑1 (MQ=255)
ttAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑CG‑AAGTCGGATAATTTTCTTT‑CCAGCGCGTCG‑AGGGGGTGCGCAACGGCGGCCCGCGGTGTGCGGGAGCGATTGTACC‑TTTTACTGACAACCGCCCGCCAAGGAACTT‑TCCCGAGGGT‑GACCTTCAC‑CCGCGGGCCGcctca > 2:127559/1‑235 (MQ=255)
ttAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑TCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAAACCCCAGCAAAGGAAATT‑CCCCGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTaa > 1:958056/1‑239 (MQ=255)
ggTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAATCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCCACGTCCGCCTGCGGGGAGCGATAGCGA‑TGGACCCTTTTCCTGATAACCCCCCGCAAAAGAACTT‑CCCCGAGGAT‑GA‑CTTCACGCCACGGGCCCCTTACACGaaaa > 2:1088685/1‑236 (MQ=255)
gTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑TCAGCGTGTCG‑AGGGCTTGCGCAACGGCGGCCTGCGGGGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑ATTCACGCCACGGGCCGCCTAAACGAATATCCAGCtt > 1:768350/1‑238 (MQ=255)
tACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTTCTTT‑TCAGCGGGGCG‑AGGGGTTGCGCAACGTCGGCCTGCGGTGAGCGGTAGCGA‑TGTACCATTTCACTGATAACCGCCCGCAAAGGAACTT‑CCCCGAGGAT‑GA‑CTTCACGCCACCGGCCGCCTAAACCaaaaatccgcctg > 2:643553/1‑227 (MQ=255)
tgcgcaaaaaaaaC‑GGCGACGGGGGCAAAAATCCATC‑AGATGGAAGCGCGACATACAAAGCCCGGCGGTT‑AA‑CGCCG‑AG‑AGGCCGACTAATTGGCTTT‑CAAGCGTGGCG‑GGGGCTGGCGAAACGGCGGCCTGCGGGGAGCAATAGCGA‑GGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCAt < 2:335686/231‑1 (MQ=255)
tCGGGAG‑AAAAAA‑CGCGGCGGGGCCCCAAAACCATCAAGAGGAAAGCGAGATATA‑GAAGGCCCGGGGTT‑TA‑CGCCGAAG‑AAGTCGATTATTTTGCTTT‑CCGGCGTGGCG‑GGGGTTTCCGCAAGGTCGGCCTGCGGGGGGGGATAGCGA‑TGACCCATTTCACGGAAAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCAt < 2:270813/239‑1 (MQ=255)
tgcgAGAAAAAACGGGGGAGGGGTACCAAATCCAATC‑AGAGGGAGGCGGGACTTATCAAG‑CCGGGGGTTGAC‑CGCGG‑AG‑ATGTCGACTAA‑TTGCTTTCCCGGGGTGTCG‑GGGGTTTCCCAACCGTCGGCGTGGGGGGTGGGATGGGGA‑TGTCCTATTCCCCTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCAt < 2:672822/238‑1 (MQ=255)
cgcgAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGCCTAATTTTCTTT‑TCAGCGGGTGG‑AGGGGTTGCGCAACGTCGGCCCGCGGGGGGCGATAGCGG‑TGTACCATTTCACTTATAACCGCCAGCAAAGGGACTT‑TCCAGAGGATGGA‑CTCCCCCCCCCGGGCC‑CGTTAACCAATATCCACACTGCCATTa > 2:711280/1‑239 (MQ=255)
cgcgAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑AGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGGGTCG‑GGGGGGTGGGCCACGGCGGCCTGCGGGGGGCGATAGCGG‑TGTACCCTTTCAATGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGGT‑GA‑ATTCAAGCCACCGGGCGGCTAAAAGAATATCCCGCCTGCCCTTa > 2:431765/1‑239 (MQ=255)
cgcgAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGCT‑AA‑CGCCC‑AG‑AAATCGACTACTTTGCTTT‑TCAGGGCGTCGTAGGGC‑CGAGCAACAGCGGGCTGCGGTGTGAGCTAGAGG‑TTGACAATTTCACTGGTACACGCCCGAAAAAGAACAT‑GCCAGAGGAT‑GA‑CTGCACGCCAAGGGACGCGTCAACGAATATACCGCCTGCCac > 2:1181303/1‑236 (MQ=255)
cgcgAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGCT‑AA‑AACCC‑AG‑AAGTCGAATAATTTGTTTT‑TCAGCGTGGCG‑GGGGCTTGCGCAAAGTCCGCCTGCGGGGAGCGATAGAGG‑AGGAACATTTTCATCATAACCGCGAGCCAAGGGACGT‑TCCCGAGGAT‑GA‑CTTTACGCCACCGGCCGCCTaaaaagaaatccaacatcgcatta > 2:227534/1‑218 (MQ=255)
aaaC‑GGCGACGGGTGCAAAAATCCATA‑AGAGGGAAGCGCGACATACCAAGGCCGGCGGTT‑AA‑CGCGG‑AG‑AAGTCGACTAATTTGCTTT‑CCGGCGTGTGG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGGGCGATAGCAA‑TGTACCTTTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGa < 2:625618/239‑1 (MQ=255)
tGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGGTTT‑TCAGCGTGTTG‑AGGGGTTGCGCAACGTCGGCCTGCGGTGAGCGATAGCGA‑TGTAACATTTTACTGATAAACCCCAACAAAAGAACTT‑CCCCGAGGCT‑GA‑CTTTCCCCCACGCGCCGCCTCAACCAAAAACCAGCTTGCCCTTATCGTTggcaccggtcgcttgt > 2:1135099/1‑225 (MQ=255)
caaaaaCCCAAC‑AGATGGAAGCGCGAAAAAACAAGACCGGCGGTT‑AC‑CGCCG‑AG‑AAGTCGCCTAATTTGCTTC‑CCAGGGTGTCG‑AGGGCTTGCGAAACGTCGGCCTGGGGTGAGCGATAGCGA‑TGTACCATTTCACTAAAAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGtt < 2:187718/236‑1 (MQ=255)
acccATC‑GGATGGAGGCGCGCATTACCAACAGCGG‑GGTT‑AACCGCGG‑AG‑AGGCCGCCTATTGTGCTTC‑CCGGTGTGGCG‑GGGGCTGGCGCACCGTCGGCCGGGGGGGAGCGATAGCGA‑TGTCCCTTTTCACAGAAAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGt < 2:183282/237‑1 (MQ=255)
gACATATCAAGACCGGGGGTT‑AG‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑GGGGCTTGCGCAACGTCGGCCTGCGGTGAGCGATAGCGA‑TGTCCCATTTCACTGAAAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTaa < 1:643553/239‑1 (MQ=255)
aaatatCAGGCCGGGGGGTA‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCGGCGTGTCG‑AGGGTTTGCCAAACGTCGGCCTGCGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTaa < 2:506534/236‑1 (MQ=255)
ggcggTT‑AA‑CGCGG‑AG‑AAGTCGACTAATTTGTTTC‑CCAGGGTGGGG‑GGGGTTTGCCCACCGTCGGCCGGGGGTGGGCGAGAGCGA‑TGTCCCATTCCCCTGAAAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGt < 2:155708/239‑1 (MQ=255)
gcggTT‑AA‑CGCCG‑GG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑GGGGGTTGCGCAACGGCGGCCTGCGGGGAGCGATAGCGA‑TGTAACATTTCACTGATAAACGCCAGCAAAGGAAATT‑CCCAGAGGGT‑GA‑CTTCACGCCACGGGCCGCCTAAAAGAATATCCCGCCTTCCATTTTCGTTTGACACGGTGGCTTTTTCCCGGGTTAAAG‑GGAACCCGCGTAACCAAGTTaaaaagtt > 2:305822/1‑233 (MQ=255)
gcggTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGGTTT‑CCAGCGCGTCG‑AGGGCCTGCGCCACGTCGGGCTGCGGTGGGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCGGCAAAGGAACTT‑CCCAGAGGGT‑GA‑CTTCACCCCCCCGGCCGCCTAAACGAATATCCCCCCTGCCACTATCGTTGGACACGGTGGCTTGTT‑CCGGGGTAAAACGGAACTCGCGGACCC‑CGTTAAGATAGTc > 2:840915/1‑239 (MQ=255)
gcggTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑TCAGCGTGTCG‑AGGGCTTGCGCAACGGCGGCCCGCGGGGAGCGATAGCGG‑TGTACCATTTCACTGCTAACCCCCAGCAAAAGAACTTCCCCGGAGGA‑‑GA‑ATTCCCCCCCCAGGCCGCTTAAAAGAAAATCCCGCTTTCCATTATCGTTTGACACGGCGGCTTGTT‑TCGGGTTCAAACGGAAACCGCGTAACC‑AATTAAGATAGtt > 2:416180/1‑238 (MQ=255)
cggTT‑AA‑AGCCG‑AG‑AAGTCGACTAATTTTCTTT‑CCAGCGTGTCG‑GGGGCTTGCGCCACGTCGGCCTGCGGTGGGCGGTAGCGG‑TGTTCCATTTTCCTGATAAACGCCCGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAAAGAATATCCAGCCTGCCCTTATCGTTGGACCAGGTGGCTTGTT‑CCGGGGTAAAGCGGAACTCGCGTAACC‑ACGTAAGATAGtag > 2:312818/1‑237 (MQ=255)
ggggtaaccgcgG‑AG‑AGGCCGCCTATTTTGCTTT‑CAGGGGTGTCG‑GGGGCTGGCGAACCGGGGGCCGGCGGGGAGCGATAGCTA‑TGTCCCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGt < 2:958056/230‑1 (MQ=255)
t‑AA‑CGCCG‑AG‑AGGTCGCCTATTTTGTTTC‑CCGGGGGGTGG‑GGGGTTTGCGCAACGCCGGCCTGCGGGGGGCAATAGCGT‑GTTACCATTTCACTAATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCt < 2:887787/239‑1 (MQ=255)
g‑aAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTaaagaaag > 1:566619/1‑239 (MQ=255)
cctaCTAATTTCCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGGGGTGGGCGATAGCGA‑TGTACCTTTTCACTAAAAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAggca < 2:566619/235‑1 (MQ=255)
aTTTGCTTT‑CCATGGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGAGCGATAGCGA‑TGGACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGaa < 1:1214087/239‑1 (MQ=255)
tgtttt‑CCGGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGGGGTGAGCGATAGCGA‑TGTCCCATTCCACTGATACCCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGc < 1:1288371/236‑1 (MQ=255)
tgtttccgcgggtggCG‑GGGGCTGGCGAAGCGTCGGCCGGCGGTGGGGGATAGCGA‑TGTCCCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGc < 2:673849/228‑1 (MQ=255)
cTTC‑CCAGCGTGACG‑AGGGCTGGCCCACCGTCGCCCTGCGGTGGGGGATAGCGA‑TGTCCCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCa < 1:1200854/239‑1 (MQ=255)
ccAGGGTGTCG‑AGGGCTTGCGCACCGTCGGCCGGCGGTGAGGGATGGCGA‑TGTACCATTCCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGa < 1:220414/239‑1 (MQ=255)
cAGCGTGTGG‑GGGCTTTGCCCACCGTCGGCCTGCGTGGAGCAATGGCGA‑GTTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGat < 1:437113/239‑1 (MQ=255)
cAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGat > 1:627893/1‑239 (MQ=255)
gtgg‑AGGGCTTGCGCAACGCCGGCCTGGGGGGAGCGATGGCGA‑TGTACCTTTACACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATtcat < 1:127559/236‑1 (MQ=255)
tCG‑AGGGCTTGCGCAACGTCGGCCTACGGCGAGCGATAGCGA‑TGTACCATTTCACTGATAACAGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATCATCGTTGCACACGGTGACTTGTT‑CCGGGTTAAAGCGGaa > 1:1079744/1‑173 (MQ=255)
aGGTCTTGCGCAGCGTCGGCCGGGGGGGGGGAATAGCGA‑TGTACCATTTCACTAAAAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTcatcat < 2:1268890/238‑1 (MQ=255)
gCTTGCGCAACGTCGACCGGCGGTGGGCGTGCGCGA‑TTTACCAATCCCCAAATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCt < 2:254226/238‑1 (MQ=255)
tttGCCCAACGTGCGCCGGGGGTGAGCGATGGCGA‑TGTCCCATTTCACTGAAAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTg < 1:1324242/237‑1 (MQ=255)
ttGCGCAACGTCGGCCTGCGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCa > 1:798299/1‑239 (MQ=255)
gcgcAACGTCGGCCTGCGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAg > 1:178707/1‑238 (MQ=255)
ggCCTGCGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGt > 2:158918/1‑236 (MQ=255)
gCCTGCGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGtgct > 1:687965/1‑238 (MQ=255)
cTGCGGTGGTCGATAGCGA‑TGTACCATTTCACGAATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCa < 1:59910/239‑1 (MQ=255)
cTGCGGTGGGCGATGGGGA‑TGTCCCATTTCACGGAAAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCa < 1:884123/239‑1 (MQ=255)
cGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAATCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCATc > 2:618115/1‑238 (MQ=255)
cGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCATc > 2:1078435/1‑238 (MQ=255)
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GTTCCCATCGGCGTGAGGGAAAGCCGACGCGCCAGATCGTAGTTGCTGGTGCCCACAAACCAGGATTCCTGTTGCAGACGCTTAACGATGGTTTCTTGTACTTCGCGAG‑AAAAAC‑GGCGACGGGTGCCAAAATCCATC‑AGATGGAAGCGCGACATATCAAGACCGGCGGTT‑AA‑CGCCG‑AG‑AAGTCGACTAATTTGCTTT‑CCAGCGTGTCG‑AGGGCTTGCGCAACGTCGGCCTGCGGTGAGCGATAGCGA‑TGTACCATTTCACTGATAACCGCCAGCAAAGGAACTT‑CCCAGAGGAT‑GA‑CTTCACGCCACGGGCCGCTTAAACGAATATCCAGCTTGCCATTATCGTTGGACACGGTGACTTGTT‑CCGGGTTAAAGCGGAACTCGCGTAACC‑AGTTAAGATAGTCGGCCTTAAAGAAAGGCAGGGCAGAAAGCCACTGATATTCATCATCCTGCAGGCGCAGGTGCTGCATC > NC_000913/989707‑990177
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
