Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,974,174 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,974,1740GC98.3% 555.9 / NA 243intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (2/2);  new base C (95/142);  total (98/145)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,974,1750CG99.2% 559.7 / ‑1.6 243intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  major base G (96/143);  minor base T (1/1);  total (98/145)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.58e-01
*CP0425831,974,1760TA99.2% 564.9 / NA 243intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (97/144);  minor base G (1/1);  total (98/145)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 243 total aligned reads displayed.

CTTTCGCGCCATAGGCGGCAACGCCCTGGGAACGACCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTGCTGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACGGTGGTGGTAACCGATGTCTGGTACGCAGTCGACAATCTCTTCGCCATCGAGTTGCAAAACGATACGGA  >  CP042583/1973894‑1974454
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                      
ctTTCGCGCCATAGGCGGCAACGCCCTGGGAACGACCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGAtata                                                                                                                                                                                                                                                                                  >  1:1056126/1‑289 (MQ=255)
ctTTCGCGCCATAGGCGGCAACGCCCTGGGAACGACCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGAtata                                                                                                                                                                                                                                                                                  <  1:290800/289‑1 (MQ=255)
            aGGCGGCAACGCCCTGGGAACGACCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACt                                                                                                                                                                                                                                                                      >  1:965072/1‑289 (MQ=255)
                   aaCGCCCTGGGAACGACCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTTCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGCTCGTAACTTTTCTGACGATCGGTAAAGGAGAAGAACACTGGCGTCATTGCGCAGACGTCCTGAAAACAGGTAGAGATATACAGCAGGTGACTGTTGATg                                                                                                                                                                                                                                                               >  2:1147883/1‑289 (MQ=255)
                   aaCGCCCTGGGAACGACCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATg                                                                                                                                                                                                                                                               <  2:1378709/289‑1 (MQ=255)
                     cGCCCTGGGAACGACCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGGCGAGATATACAGCAGGTGACTGTTGATGCg                                                                                                                                                                                                                                                             >  2:1159006/1‑289 (MQ=255)
                        ccTGGGAACGACCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGa                                                                                                                                                                                                                                                           <  2:754455/288‑1 (MQ=255)
                            ggAACGACCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGt                                                                                                                                                                                                                                                      >  2:150881/1‑289 (MQ=255)
                                 gACCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGga                                                                                                                                                                                                                                                 >  1:839947/1‑289 (MQ=255)
                                  agttgtcggAATGGGGTTTTGCAGCGGCGCGTTTTGGTAAGACGCCAGACGTTTCGGCAGACAGTCGAGGAACTCACGCAGCAGGAGATCGCGGCCGGGCGGCAGGTCGTGCGCTGCGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGga                                                                                                                                                                                                                                                 <  2:1616780/280‑1 (MQ=255)
                                  aCCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGGAATATACAGCAGGTGACTGTTGATGCGGAAGAGTTCGgag                                                                                                                                                                                                                                                >  2:80583/1‑289 (MQ=255)
                                  aCCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGAtata                                                                                                                                                                                                                                                                                  >  1:1285633/1‑255 (MQ=255)
                                  aCCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGgag                                                                                                                                                                                                                                                >  1:584994/1‑289 (MQ=255)
                                      ttCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTGCAGATATACAGCAGGTGACAGTTGAGGCGGAACAGTTCGGagagga                                                                                                                                                                                                                                            >  2:439046/1‑287 (MQ=255)
                                       tCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCAt                                                                                                                                                                                                                                           <  1:205086/289‑1 (MQ=255)
                                                tgtTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATAcag                                                                                                                                                                                                                                                                               <  2:982911/244‑1 (MQ=255)
                                                tgtTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATAcag                                                                                                                                                                                                                                                                               >  1:982911/1‑244 (MQ=255)
                                                 gtgtagcaggagcgcTTTCGCGGAAGACGCCAGACGGTGAGGCATCCAGTGGAGGAACTCACGCGGCAGGCGAGCCCAGCCGCGCGGACGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAAt                                                                                                                                                                                                                                  <  2:1351668/276‑1 (MQ=255)
                                                 gtTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATg                                                                                                                                                                                                                                 >  1:1660436/1‑289 (MQ=255)
                                                     tGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCACTCCGGAACCACGCCGGGTACATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATCAAGAAGGTGACCGTTGATGCGGAACAGTTCGGAGCGCAAAACGCGAATGACGt                                                                                                                                                                                                                             >  2:1850143/1‑289 (MQ=255)
                                                     tGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGt                                                                                                                                                                                                                             >  2:1788393/1‑289 (MQ=255)
                                                           gccgcTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTaa                                                                                                                                                                                                                          <  1:562520/286‑1 (MQ=255)
                                                           gccgcTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAAcg                                                                                                                                                                                                                        <  1:150881/288‑1 (MQ=255)
                                                            ccgcTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTTCAACAGATCGTAAATTTTCTGACGATAGGGAAAGGCGAAGAACAGTGGCGGCATTGCGCCGACGTCCGGAATAAAGGTGGAGATATATAGAAGGGGACTGTTGATGCGGAACATTTCGGAAACCATAAGCCGAATGACGTTACcgcg                                                                                                                                                                                                                      >  2:528469/1‑289 (MQ=255)
                                                                        aaGACGCCAGACGTTTCGGCATCCAGTCGAGGACCTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACgg                                                                                                                                                                                                           <  2:730958/288‑1 (MQ=255)
                                                                         aGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATAcagcag                                                                                                                                                                                                                                                                            >  2:1240208/1‑222 (MQ=255)
                                                                         aGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATAcag                                                                                                                                                                                                                                                                               >  2:432802/1‑219 (MQ=255)
                                                                              ccAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCCATACGGCACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTCAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAACGGTCGATATATACAGCAGGTGACAGTTGATGCGGAACCGTTCGGGGGACATAACGCGGATGACGATAAATCGTACCGGCACGGtcaccc                                                                                                                                                                                                     >  2:1009979/1‑283 (MQ=255)
                                                                              ccAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATccc                                                                                                                                                                                                    >  1:94276/1‑289 (MQ=255)
                                                                                   ggtgtCGGCATCCAGGCGGGAAACCGACGAAGAAGGCGAGACCAGCGGCGCGGCAGGTCGTGCGATACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGcc                                                                                                                                                                                                <  2:819914/284‑1 (MQ=255)
                                                                                   cGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGcc                                                                                                                                                                                                <  1:1243780/288‑1 (MQ=255)
                                                                                      ttCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGtt                                                                                                                                                                                            <  1:478203/289‑1 (MQ=255)
                                                                                      ttCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGCGAgccaggccag                                                                                                                                                                                              >  2:263826/1‑287 (MQ=255)
                                                                                      ttCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGAGAATGACGGTAACGCGATCCGGCCCGGTCATCCCGGCCAggt                                                                                                                                                                                            >  2:928769/1‑287 (MQ=255)
                                                                                                  tCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGcc                                                                                                                                                                                 <  1:1213931/288‑1 (MQ=255)
                                                                                                   cGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCa                                                                                                                                                                                <  1:1638243/288‑1 (MQ=255)
                                                                                                          cTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTaa                                                                                                                                                                        >  1:1397172/1‑289 (MQ=255)
                                                                                                            cACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAg                                                                                                                                                                       >  1:1631541/1‑288 (MQ=255)
                                                                                                                  gcagGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGaa                                                                                                                                                                                                                                                          >  2:1279602/1‑199 (MQ=255)
                                                                                                                                   cgcgGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAgccgcccg                                                                                                                                               >  1:628145/1‑287 (MQ=255)
                                                                                                                                   cgcgGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGa                                                                                                                                               >  1:1086696/1‑289 (MQ=255)
                                                                                                                                   cgcgGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGa                                                                                                                                               >  2:1063055/1‑289 (MQ=255)
                                                                                                                                     cgGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAg                                                                                                                                              <  1:1788393/288‑1 (MQ=255)
                                                                                                                                                gcgcTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACg                                                                                                                                  <  1:620652/289‑1 (MQ=255)
                                                                                                                                                 cgcTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACgg                                                                                                                                 >  2:830546/1‑289 (MQ=255)
                                                                                                                                                  ggaaagccgacAATACGGAACCCCGCCGGGGGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTTAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTAAATAAAGGTCGAGATATACAGGAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGt                                                                                                                                <  2:1634262/284‑1 (MQ=255)
                                                                                                                                                  gcTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTTCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTCTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACgg                                                                                                                                 <  2:476938/288‑1 (MQ=255)
                                                                                                                                                  gcTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACgg                                                                                                                                 <  1:917275/288‑1 (MQ=255)
                                                                                                                                                  gcTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACgg                                                                                                                                 <  1:1159006/288‑1 (MQ=255)
                                                                                                                                                  gcTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGt                                                                                                                                <  1:1832606/289‑1 (MQ=255)
                                                                                                                                                   ggaCGCGGCCAAAACGGAACCACGCCGGGTTCATACGGAAACCAGGGATAGAGTCAACCAGATCGTAAATGTTCGGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGt                                                                                                                                <  2:559161/286‑1 (MQ=255)
                                                                                                                                                   cgaCGCCGCAAATACGGAACGCGGCCGGGGGGATACGGAAACCAGGGATGGCGTCCACCAGATCGTAAATTTTCTGACGATAGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGt                                                                                                                                <  2:1037541/286‑1 (MQ=255)
                                                                                                                                                   cTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGt                                                                                                                                <  2:1222914/288‑1 (MQ=255)
                                                                                                                                                   ataagccgccAAAACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCGGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGGGCCGAGGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGt                                                                                                                                <  2:794302/284‑1 (MQ=255)
                                                                                                                                                    tcggccgccAATACGGAACCACGCCGGGGGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTc                                                                                                                               <  2:584994/285‑1 (MQ=255)
                                                                                                                                                    tACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTc                                                                                                                               <  1:1063055/288‑1 (MQ=255)
                                                                                                                                                    tACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTc                                                                                                                               <  1:814143/288‑1 (MQ=255)
                                                                                                                                                    tACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTc                                                                                                                               <  2:1485290/288‑1 (MQ=255)
                                                                                                                                                    tACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTc                                                                                                                               <  1:1597611/288‑1 (MQ=255)
                                                                                                                                                      cgccgcCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGt                                                                                                                            >  1:877803/1‑289 (MQ=255)
                                                                                                                                                         cgccAATTCGGAACCACGCCGGGTACATACGGAAACCAGTGATTGCTTCCAACAGATCGTAAATTTTCTGACGAGCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGtata                                                                                                                         <  1:1850143/289‑1 (MQ=255)
                                                                                                                                                         cgccAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATc                                                                                                                                                                                                      >  1:276514/1‑212 (MQ=255)
                                                                                                                                                         cgccAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGtata                                                                                                                         <  1:1136513/289‑1 (MQ=255)
                                                                                                                                                            cAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACg                                                                                                                       <  1:439046/288‑1 (MQ=255)
                                                                                                                                                                         cGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCa                                                                                                                                                                                <  2:1838297/218‑1 (MQ=255)
                                                                                                                                                                         cGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCAt                                                                                                                                                                   >  2:639396/1‑231 (MQ=255)
                                                                                                                                                                         cGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCtggg                                                                                                          >  2:1669377/1‑286 (MQ=255)
                                                                                                                                                                          gCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGCCGTCCTGATTAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGc                                                                                                         >  1:39784/1‑288 (MQ=255)
                                                                                                                                                                              ggTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGAATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTAGATACGGTCAGTATACGTAATGTAGCTGTGCCAgg                                                                                                     >  1:1237338/1‑288 (MQ=255)
                                                                                                                                                                                    tACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGAGACGGTCAGTATACGCAATGTAGGTGTGCCAAGCCTGGCg                                                                                              >  2:1652132/1‑289 (MQ=255)
                                                                                                                                                                                      cGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGt                                                                                             >  2:1322503/1‑288 (MQ=255)
                                                                                                                                                                                        gAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAg                                                                                                               >  1:522016/1‑268 (MQ=255)
                                                                                                                                                                                               gTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGATGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCTATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCTCAt                                                                                     >  2:1087324/1‑287 (MQ=255)
                                                                                                                                                                                               gTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCATGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCAAGCCCGTAAGGCATTTCGTTAACGCAGCCGCCGATGTCTTCGTTACGGGCAGTAAACCGAATGTAGCTGGTCCAGGACTGACATTCGCCCAatt                                                                                   >  2:674565/1‑289 (MQ=255)
                                                                                                                                                                                                 gATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCAtttt                                                                                  <  1:647468/288‑1 (MQ=255)
                                                                                                                                                                                                 gATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCAttt                                                                                   >  1:686488/1‑287 (MQ=255)
                                                                                                                                                                                                     gCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCTAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCg                                                                             <  1:1642591/289‑1 (MQ=255)
                                                                                                                                                                                                     gCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCg                                                                             <  1:761206/289‑1 (MQ=255)
                                                                                                                                                                                                     gCTTACACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCg                                                                             <  2:972854/289‑1 (MQ=255)
                                                                                                                                                                                                          caccaGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAg                                                                                                                                                                                              <  1:1429761/171‑1 (MQ=255)
                                                                                                                                                                                                          caccaGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGt                                                                                                                                                                          <  2:1767339/191‑1 (MQ=255)
                                                                                                                                                                                                                aTCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGccgccg                                                                                                                                                >  1:1030380/1‑211 (MQ=255)
                                                                                                                                                                                                                aTCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAg                                                                                                                                              <  2:878300/213‑1 (MQ=255)
                                                                                                                                                                                                                 tCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACggtg                                                                   <  1:1826531/287‑1 (MQ=255)
                                                                                                                                                                                                                    tAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACggtggtggt                                                              >  2:1824037/1‑289 (MQ=255)
                                                                                                                                                                                                                    tAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCCCCCATTTTCTCCGCACCACgtgggtgtg                                                              >  2:1450510/1‑287 (MQ=255)
                                                                                                                                                                                                                         tttCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACGGTGGTGGTAACCg                                                         <  1:1455969/289‑1 (MQ=255)
                                                                                                                                                                                                                         tttCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACGGTGGTGGTAACCg                                                         <  2:251615/289‑1 (MQ=255)
                                                                                                                                                                                                                           tCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACGGTGGTGGTAACCGAt                                                       <  1:1151716/289‑1 (MQ=255)
                                                                                                                                                                                                                               aCGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATAGACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACGGTGGTGGTAACCGATGTc                                                    <  2:845330/288‑1 (MQ=255)
                                                                                                                                                                                                                                   tCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACGGTGGTGGTAACCGATGTCTGGt                                                <  2:1397172/288‑1 (MQ=255)
                                                                                                                                                                                                                                     ggTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACGGTGGTGGTAACCGATGTCTGGTACg                                             <  1:1322503/289‑1 (MQ=255)
                                                                                                                                                                                                                                               aagaaCACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCgg                                                                                                                                                                                                                <  2:350013/116‑1 (MQ=255)
                                                                                                                                                                                                                                               aagaaCACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCgg                                                                                                                                                                                                                >  1:350013/1‑116 (MQ=255)
                                                                                                                                                                                                                                                      cTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGc                                                                                                              >  2:623774/1‑207 (MQ=255)
                                                                                                                                                                                                                                                           gTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGc                                                                                                              <  2:1167839/202‑1 (MQ=255)
                                                                                                                                                                                                                                                           gTCATTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACGGTGGTGGTAACCGATGTCTGGTACGCAGTCGACAATCTCTTCGCCa                        <  1:783953/288‑1 (MQ=255)
                                                                                                                                                                                                                                                              agtGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTtct                                                                                <  2:691/227‑1 (MQ=255)
                                                                                                                                                                                                                                                              aTTGCGCCGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACGGGGGTGGTAACCGATGGCTGGTACGCAGTCGACAATCCCTTCCCCATCGa                    >  2:314340/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     cGACGTCCTGAATAAAGGTCGAGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACGGTGGTGGTAACCGATGTCTGGTACGCAGTCGACAATCTCTTCGCCATCGAGTTGCaa             <  1:709408/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                      
CTTTCGCGCCATAGGCGGCAACGCCCTGGGAACGACCTTTCAGAATGGTGTTTTGCAGCGCCGCTTTCTCGTAAGACGCCAGACGTTTCGGCATCCAGTCGAGGAACTCACGCAGCAGGCGATCCCAGCCGCGCGGCAGGTCGTGCGCTACGCCGCCAATACGGAACCACGCCGGGTGCATACGGAAACCAGTGATTGCTTCCACCAGATCGTAAATTTTCTGACGATCGGTAAAGGCGAAGAACACTGGCGTCATTGCGCCGACGTCCTGAATAAAGGTGCTGATATACAGCAGGTGACTGTTGATGCGGAACAGTTCGGAGAGCATAACGCGAATGACGTTAACGCGATCCGGCACGGTGATCCCGGCCAGTTTCTCTACCGCCAGCACGTAAGGCATTTCGTTAACGCAGCCGCCGAGGTATTCGATACGGTCAGTATACGGAATGTAGCTGTGCCAGGACTGGCGTTCGCCCATTTTCTCCGCACCACGGTGGTGGTAACCGATGTCTGGTACGCAGTCGACAATCTCTTCGCCATCGAGTTGCAAAACGATACGGA  >  CP042583/1973894‑1974454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A