Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F28 I1 R1	143	98.3	3330986	99.3%	3307669	138.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,749,951	T→C	D133G (GAT→GGT)	ydhU ←	putative cytochrome YdhU

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,749,951	0	T	C	100.0%	319.2 / NA	89	D133G (GAT→GGT)	ydhU	putative cytochrome YdhU
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (45/44); total (45/44)

ATTAAATTTAGACTGGGTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACTGGCCAG  >  NC_000913/1749818‑1750087

aTTAAATTTAGACTGGGTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCaa                                                                                                                                    <  2:153892/140‑1 (MQ=255)

aTTAAATTTAGACTGGGTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCaa                                                                                                                                    <  1:693709/140‑1 (MQ=255)

 ttAAATTTAGACTGGGTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAAc                                                                                                                                   >  1:461162/1‑140 (MQ=255)

 ttAAATTTAGACTGGGTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAAc                                                                                                                                   >  1:505918/1‑140 (MQ=255)

  tAAATTTAGACTGGGTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACg                                                                                                                                  >  2:1081600/1‑140 (MQ=255)

     aTTTAGACTGGGTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCa                                                                                                                               <  2:994835/140‑1 (MQ=255)

     aTTTAGACTGGGTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCa                                                                                                                               <  1:44374/140‑1 (MQ=255)

          gACTGGGTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGAt                                                                                                                          <  1:829861/140‑1 (MQ=255)

               ggTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCa                                                                                                                               >  2:1218037/1‑130 (MQ=255)

               ggTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCa                                                                                                                               <  1:1218037/130‑1 (MQ=255)

               ggTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGca                                                                                                                     >  2:685439/1‑140 (MQ=255)

                    ttgCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAg                                                                                                                <  1:1620279/140‑1 (MQ=255)

                    ttgCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAg                                                                                                                >  1:403401/1‑140 (MQ=255)

                    ttgCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAg                                                                                                                <  1:1514550/140‑1 (MQ=255)

                    ttgCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAg                                                                                                                >  1:1137578/1‑140 (MQ=255)

                      tgcGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGcc                                                                                                              <  1:1512386/138‑1 (MQ=255)

                       ccGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCg                                                                                                             <  2:505918/140‑1 (MQ=255)

                         gggAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGa                                                                                                            >  2:970448/1‑139 (MQ=255)

                         gggAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGa                                                                                                            <  1:970448/139‑1 (MQ=255)

                         gggAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAg                                                                                                           >  1:709030/1‑140 (MQ=255)

                         gggAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTAGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAg                                                                                                           >  2:261678/1‑140 (MQ=255)

                          ggAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGTCATTGATCAGCACAAAGCCGAGc                                                                                                          >  1:1079343/1‑140 (MQ=255)

                             aaGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTAGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAg                                                                                                       <  1:261678/140‑1 (MQ=255)

                                     tcttcCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATg                                                                                                   >  2:1450390/1‑136 (MQ=255)

                                     tcttcCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATg                                                                                                   <  1:1450390/136‑1 (MQ=255)

                                       ttcCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTa                                                                                             >  2:23955/1‑140 (MQ=255)

                                         cccccTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAg                                                                                                       <  2:617670/128‑1 (MQ=255)

                                         cccccTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAg                                                                                                       >  1:617670/1‑128 (MQ=255)

                                          ccccTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACa                                                                                          >  1:35181/1‑140 (MQ=255)

                                          ccccTGCATAATGCCAAACAAATAAAATCGCGTNNGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACa                                                                                          >  1:423075/1‑140 (MQ=255)

                                            ccTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACaaa                                                                                        >  2:352982/1‑140 (MQ=255)

                                              tGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACaaaaa                                                                                      >  2:205936/1‑140 (MQ=255)

                                              tGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACaaaaa                                                                                      >  1:964074/1‑140 (MQ=255)

                                               gCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACaaaatc                                                                                     >  1:1024573/1‑138 (MQ=255)

                                                 aTAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATcc                                                                                   <  1:685439/140‑1 (MQ=255)

                                                   aaTGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGc                                                                                 >  1:157905/1‑140 (MQ=255)

                                                    aTGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCa                                                                                <  1:352982/140‑1 (MQ=255)

                                                     tGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGGCACCCCTGACGACGAATGGGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCaa                                                                               >  2:1483867/1‑140 (MQ=255)

                                                          aacaaaTAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTc                                                                          >  1:1547836/1‑140 (MQ=255)

                                                          aacaaaTAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTc                                                                          >  2:261057/1‑140 (MQ=255)

                                                            caaaTAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGTCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCAt                                                                        <  2:1079343/140‑1 (MQ=255)

                                                             aaaTAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATg                                                                       <  1:261057/140‑1 (MQ=255)

                                                             aaaTAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATg                                                                       <  1:1483867/140‑1 (MQ=255)

                                                               aTAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCa                                                                     >  1:381699/1‑140 (MQ=255)

                                                               aTAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCa                                                                     >  1:311576/1‑140 (MQ=255)

                                                                   aaTCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGc                                                                 <  2:405735/140‑1 (MQ=255)

                                                                       gcgTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAAcc                                                             <  1:1003032/140‑1 (MQ=255)

                                                                       gcgTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAAcc                                                             >  2:80259/1‑140 (MQ=255)

                                                                        cgTTTGTTTTGCCGCTCGTTCCAGCCACCCCTCACGACGACTGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCa                                                            <  2:1469860/140‑1 (MQ=255)

                                                                         gtttgtttTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAg                                                           >  2:1374298/1‑140 (MQ=255)

                                                                                   ccGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAAcc                                                 >  1:708990/1‑140 (MQ=255)

                                                                                      cTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCa                                              >  1:808134/1‑140 (MQ=255)

                                                                                       tCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAg                                             <  2:35181/140‑1 (MQ=255)

                                                                                       tCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAg                                             <  2:964074/140‑1 (MQ=255)

                                                                                        cGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGt                                            >  1:1137307/1‑140 (MQ=255)

                                                                                              aGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGcc                                      <  1:1059581/140‑1 (MQ=255)

                                                                                              aGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGcc                                      <  2:311576/140‑1 (MQ=255)

                                                                                                   ccccTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCccacca                                 >  2:1376990/1‑140 (MQ=255)

                                                                                                    cccTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCAt                                >  1:64378/1‑140 (MQ=255)

                                                                                                    cccTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCAt                                >  1:961396/1‑140 (MQ=255)

                                                                                                     ccTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCcca                                    >  2:823849/1‑135 (MQ=255)

                                                                                                     ccTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCcca                                    <  1:823849/135‑1 (MQ=255)

                                                                                                     ccTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATc                               >  1:1619434/1‑140 (MQ=255)

                                                                                                     ccTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATc                               >  1:1408243/1‑140 (MQ=255)

                                                                                                     ccTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATc                               >  1:665736/1‑140 (MQ=255)

                                                                                                      cTGACGACGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCg                              <  1:710858/140‑1 (MQ=255)

                                                                                                        gacgacGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCa                            <  2:709030/140‑1 (MQ=255)

                                                                                                        gacgacGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCa                            <  1:1374298/140‑1 (MQ=255)

                                                                                                        gacgacGAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCa                            <  2:961396/140‑1 (MQ=255)

                                                                                                        gacgacGAATCCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAAC‑AAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCaa                           <  2:1024573/140‑1 (MQ=255)

                                                                                                         acgacgAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCaa                           >  1:1007648/1‑140 (MQ=255)

                                                                                                         acgacgAATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCaa                           >  1:1581377/1‑140 (MQ=255)

                                                                                                             cgaATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTg                       >  1:1138317/1‑140 (MQ=255)

                                                                                                              gaATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGTCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGa                      >  1:798477/1‑140 (MQ=255)

                                                                                                              gaATGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGa                      <  2:1138317/140‑1 (MQ=255)

                                                                                                                aTGCGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGAtt                    <  2:1373639/140‑1 (MQ=255)

                                                                                                                   cGATAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTAt                 >  1:82141/1‑140 (MQ=255)

                                                                                                                     aTAGTGGTGACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCa               <  2:423075/140‑1 (MQ=255)

                                                                                                                        gtggtgACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGcc            <  2:1547836/140‑1 (MQ=255)

                                                                                                                            tgACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACt        >  2:1193070/1‑140 (MQ=255)

                                                                                                                            tgACCATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACt        >  2:734762/1‑140 (MQ=255)

                                                                                                                                cATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCTCCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACTGGcc    <  1:23955/140‑1 (MQ=255)

                                                                                                                                cATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACTGGcc    <  1:1081600/140‑1 (MQ=255)

                                                                                                                                cATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACTGGcc    <  2:902284/140‑1 (MQ=255)

                                                                                                                                cATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACTGGcc    <  1:771334/140‑1 (MQ=255)

                                                                                                                                cATTACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACTGGcc    <  2:808134/140‑1 (MQ=255)

                                                                                                                                  ttACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTTATTTATCAGCCCACTGGCCAg  <  2:1183327/140‑1 (MQ=255)

                                                                                                                                  ttACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACTGGCCAg  <  1:80259/140‑1 (MQ=255)

                                                                                                                                  ttACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACTGGCCAg  <  1:871911/140‑1 (MQ=255)

                                                                                                                                  ttACCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACTGGCCAg  <  2:461162/140‑1 (MQ=255)

ATTAAATTTAGACTGGGTTGTTGCCGGGAAAGGATGTTCTTCCCCCTGCATAATGCCAAACAAATAAAATCGCGTTTGTTTTGCCGCTCGTTCCAGCCACCCCTGACGACGAATGCGATAGTGGTGACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACTGGCCAG  >  NC_000913/1749818‑1750087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A