Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 143 98.3 3330986 99.3% 3307669 138.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,760,996 T→C S266G (AGC→GGC)  sufD ← Fe‑S cluster scaffold complex subunit SufD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,760,9960TC100.0% 228.6 / NA 65S266G (AGC→GGC) sufDFe‑S cluster scaffold complex subunit SufD
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/34);  total (31/34)

CGCGGCCTTTGTCGCTGACGATAGTTTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCTGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGT  >  NC_000913/1760861‑1761127
                                                                                                                                       |                                                                                                                                   
cgcgGCCTTTGTCGCTGACGATAGTTTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTTCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGTCAGGCTATTGATCCGCAGCGTGACGttt                                                                                                                                 >  2:478890/1‑140 (MQ=255)
cgcgGCCTTTGTCGCTGACGATAGTTTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACTCCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGttt                                                                                                                                 >  2:1491500/1‑140 (MQ=255)
cgcgGCCTTTGTCGCTGACGATAGTTTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGttt                                                                                                                                 >  2:1408098/1‑140 (MQ=255)
           tCGCTGACGATAGTCTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAg                                                                                                                      <  1:676761/140‑1 (MQ=255)
              cTGACGATAGTTTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTg                                                                                                                   <  1:1618731/140‑1 (MQ=255)
               tGACGATAGTTTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCg                                                                                                                              >  1:857787/1‑128 (MQ=255)
               tGACGATAGTTTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCg                                                                                                                              <  2:857787/128‑1 (MQ=255)
                 aCGATAGTTTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGt                                                                                                                >  2:1253318/1‑140 (MQ=255)
                  cGATAGTTTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGTCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTa                                                                                                               <  1:478890/140‑1 (MQ=255)
                   gATAGTTTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTAc                                                                                                              <  1:1491500/140‑1 (MQ=255)
                      aGTTTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTgg                                                                                                           >  1:500806/1‑140 (MQ=255)
                        ttttGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGgtg                                                                                                         <  1:1253318/140‑1 (MQ=255)
                         tttGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGgtgt                                                                                                        <  1:85607/140‑1 (MQ=255)
                          ttGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGtgtt                                                                                                       <  1:400165/140‑1 (MQ=255)
                           tgtgCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGtgttg                                                                                                      <  2:500806/140‑1 (MQ=255)
                           tgtgCAACTGCCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGtgttg                                                                                                      <  1:488998/140‑1 (MQ=255)
                             tgCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTtgtg                                                                                                    <  1:1274243/140‑1 (MQ=255)
                                aaCTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCg                                                                                                 <  1:1602294/140‑1 (MQ=255)
                                  cTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCATACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTa                                                                                               >  1:354235/1‑140 (MQ=255)
                                  cTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTa                                                                                               >  1:1262511/1‑140 (MQ=255)
                                   tGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTaa                                                                                              <  2:531476/140‑1 (MQ=255)
                                     tCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAaca                                                                                            >  2:861614/1‑140 (MQ=255)
                                     tCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAaca                                                                                            >  2:1145820/1‑140 (MQ=255)
                                               cAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCAcc                                                                                  <  1:1260801/140‑1 (MQ=255)
                                               cAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCAcc                                                                                  <  1:1408098/140‑1 (MQ=255)
                                               cAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCAcc                                                                                  <  1:55857/140‑1 (MQ=255)
                                                       tttATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGa                                                                          >  2:1578474/1‑140 (MQ=255)
                                                         tATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGaaa                                                                        >  1:396216/1‑140 (MQ=255)
                                                              tgtTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCa                                                                                    <  2:472833/123‑1 (MQ=255)
                                                              tgtTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCa                                                                                    >  1:472833/1‑123 (MQ=255)
                                                              tgtTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACtgtg                                                                   <  1:1578474/140‑1 (MQ=255)
                                                              tgtTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACtgtg                                                                   <  1:1145820/140‑1 (MQ=255)
                                                                ttCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGc                                                                 >  1:845176/1‑140 (MQ=255)
                                                                   cagccagGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTaa                                                              >  2:1320247/1‑140 (MQ=255)
                                                                     gccagGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAAt                                                            >  2:22320/1‑140 (MQ=255)
                                                                     gccagGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAAt                                                            >  2:479579/1‑140 (MQ=255)
                                                                     gccagGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAAt                                                            >  2:708037/1‑140 (MQ=255)
                                                                          gTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGt                                                       <  2:496382/140‑1 (MQ=255)
                                                                               ggTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGTTGGCac                                                  >  2:698934/1‑139 (MQ=255)
                                                                                   tCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTc                                              >  1:46083/1‑140 (MQ=255)
                                                                                    cacacaCCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTca                                             >  2:1203793/1‑140 (MQ=255)
                                                                                    cacacaCCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTca                                             >  1:242413/1‑140 (MQ=255)
                                                                                    cacacaCCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTca                                             >  2:95852/1‑140 (MQ=255)
                                                                                      cacacCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTcagc                                           >  2:1430225/1‑140 (MQ=255)
                                                                                        cacCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTcagcca                                         <  1:479579/140‑1 (MQ=255)
                                                                                         acCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTcagc                                           >  2:991488/1‑137 (MQ=255)
                                                                                         acCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTcagc                                           <  1:991488/137‑1 (MQ=255)
                                                                                           cTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGca                                      <  2:1262511/140‑1 (MQ=255)
                                                                                             cGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGcaac                                    <  1:22320/140‑1 (MQ=255)
                                                                                             cGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGcaac                                    <  1:708037/140‑1 (MQ=255)
                                                                                                        ggCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTa                           >  1:598574/1‑138 (MQ=255)
                                                                                                        ggCATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTa                           <  2:598574/138‑1 (MQ=255)
                                                                                                          cATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAg                       >  2:821568/1‑140 (MQ=255)
                                                                                                          cATCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCACACAGCAACAAATCGTTATGAg                       >  2:626239/1‑140 (MQ=255)
                                                                                                           aTCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGc                      <  2:396216/140‑1 (MQ=255)
                                                                                                            tCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGCa                     <  2:354235/140‑1 (MQ=255)
                                                                                                            tCGCCAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGCa                     <  1:1430225/140‑1 (MQ=255)
                                                                                                               ccAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGc                      <  1:104506/136‑1 (MQ=255)
                                                                                                               ccAGGCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGc                      >  2:104506/1‑136 (MQ=255)
                                                                                                                   gCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGCAAAgtggt              <  1:861614/140‑1 (MQ=255)
                                                                                                                   gCTATTGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGCAAAgtggt              <  2:1079301/140‑1 (MQ=255)
                                                                                                                       ttGATCCGCAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACt          >  2:1017775/1‑140 (MQ=255)
                                                                                                                               cAGCGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGt  >  1:1110591/1‑140 (MQ=255)
                                                                                                                                  cGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAg       >  1:20707/1‑132 (MQ=255)
                                                                                                                                  cGTGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAg       <  2:20707/132‑1 (MQ=255)
                                                                                                                                    tGCCGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGt  <  2:642973/135‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                   
CGCGGCCTTTGTCGCTGACGATAGTTTTGTGCAACTGTCGGCTGTTACAAAAACCTTTATTGTGTTCCAGCCAGGTACGGGTATCACACACCTCGTTTTTCACCGGCATCGCCAGGCTATTGATCCGCAGCGTGCTGTTTTCGCCATTGAGTTGCGTACTGGTGTTGTGTCGTAACACTGCGCCACCCAGCAGGAAACTGTGGCTAAATGCGGTGGCATCCTCAGCCAGCAACAAATCGTTATGAGCAAAGTGGTGACTGAGCGGGT  >  NC_000913/1760861‑1761127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A