Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 235,184 G→T L123L (CTG→CTT)  yafS → putative S‑adenosyl‑L‑methionine‑dependent methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913235,1840GT100.0% 442.9 / NA 127L123L (CTG→CTT) yafSputative S‑adenosyl‑L‑methionine‑dependent methyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (68/59);  total (68/59)

Only 100 of 131 total aligned reads displayed.

GGCGGACCCACTTCATCTTCCTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTGGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCTTTGTTGAATTTTG  >  NC_000913/235049‑235320
                                                                                                                                       |                                                                                                                                        
 gCGGACCCACTTCATCTTCCTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCAt                                                                                                                                     >  1:1068051/1‑140 (MQ=255)
 gCGGACCCACTTCATCTTCCTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCAt                                                                                                                                     >  1:663003/1‑140 (MQ=255)
 gCGGACCCACTTCATCTTCCTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCAt                                                                                                                                     >  2:1644987/1‑140 (MQ=255)
   ggACCCACTTCATCTTCCTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTa                                                                                                                                   <  1:676300/140‑1 (MQ=255)
   ggACCCACTTCATCTTCCTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTa                                                                                                                                   <  1:410857/140‑1 (MQ=255)
     tcccACTTCATCTTCCTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGt                                                                                                                                 <  1:233755/139‑1 (MQ=255)
     aCCCACTTCATCTTCCTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGt                                                                                                                                 >  1:1761133/1‑140 (MQ=255)
     aCCCACTTCATCTTCCTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGt                                                                                                                                 >  2:1090316/1‑140 (MQ=255)
              aTCTTCCTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAAt                                                                                                                        <  1:1074668/140‑1 (MQ=255)
                  tCCTTTTGCCGAGAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCa                                                                                                                    <  2:2095146/140‑1 (MQ=255)
                   ccTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCAt                                                                                                                   <  2:1472294/140‑1 (MQ=255)
                   ccTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCAt                                                                                                                   >  1:1720092/1‑140 (MQ=255)
                    attttGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATc                                                                                                                  <  2:761782/139‑1 (MQ=255)
                     ttttGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCa                                                                                                                 >  2:1880823/1‑140 (MQ=255)
                     ttttGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCa                                                                                                                 >  2:1976650/1‑140 (MQ=255)
                      tttGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAg                                                                                                                <  2:663003/140‑1 (MQ=255)
                      tttGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAg                                                                                                                <  2:1509236/140‑1 (MQ=255)
                           cGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTa                                                                                                           <  2:1489600/140‑1 (MQ=255)
                           cGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTa                                                                                                           <  1:259335/140‑1 (MQ=255)
                                          tGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAAc                                                                                            <  2:1289108/140‑1 (MQ=255)
                                          tGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAAc                                                                                            <  1:1998460/140‑1 (MQ=255)
                                           gTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACt                                                                                           <  1:1653980/140‑1 (MQ=255)
                                           gTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACt                                                                                           <  2:569141/140‑1 (MQ=255)
                                           gTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACt                                                                                           <  2:1151399/140‑1 (MQ=255)
                                            tttGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACtt                                                                                          >  2:1659125/1‑140 (MQ=255)
                                             ttGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTtg                                                                                         >  1:772338/1‑140 (MQ=255)
                                              tGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGa                                                                                                      >  1:341633/1‑126 (MQ=255)
                                              tGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGa                                                                                                      <  2:341633/126‑1 (MQ=255)
                                                    cTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGt                                                                                  >  1:949038/1‑140 (MQ=255)
                                                       gCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTAtt                                                                               >  1:1486547/1‑140 (MQ=255)
                                                          catacatTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTgcg                                                                            >  1:744300/1‑140 (MQ=255)
                                                                 tGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAAcc                                                                     >  1:1915803/1‑140 (MQ=255)
                                                                 tGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAAcc                                                                     >  1:1598062/1‑140 (MQ=255)
                                                                 tGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAAcc                                                                     >  2:1451240/1‑140 (MQ=255)
                                                                 tGCCGTGGAGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTTCGCAAAAcc                                                                     >  1:2132301/1‑140 (MQ=255)
                                                                  gCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    <  2:949038/140‑1 (MQ=255)
                                                                  gCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    <  2:1064241/140‑1 (MQ=255)
                                                                  gCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    <  2:744300/140‑1 (MQ=255)
                                                                  gCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    <  1:14156/140‑1 (MQ=255)
                                                                  gCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    <  2:1328653/140‑1 (MQ=255)
                                                                  gCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    <  2:292186/140‑1 (MQ=255)
                                                                  gCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    <  2:236340/140‑1 (MQ=255)
                                                                  gCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    <  2:1761133/140‑1 (MQ=255)
                                                                   ccGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTa                                                                                 <  1:2033742/126‑1 (MQ=255)
                                                                   ccGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTc                                                                   <  1:1283628/140‑1 (MQ=255)
                                                                     gtggtgCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGc                                                                 <  1:2027069/140‑1 (MQ=255)
                                                                     gtggtgCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGc                                                                 <  2:760185/140‑1 (MQ=255)
                                                                      tggtgCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    >  2:944695/1‑136 (MQ=255)
                                                                      tggtgCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    <  1:944695/136‑1 (MQ=255)
                                                                      tggtgCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    <  1:1135186/136‑1 (MQ=255)
                                                                      tggtgCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGcc                                                                <  1:1734852/140‑1 (MQ=255)
                                                                      tggtgCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGcc                                                                <  1:468099/140‑1 (MQ=255)
                                                                      tggtgCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGcc                                                                >  1:46505/1‑140 (MQ=255)
                                                                      tggtgCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGcc                                                                >  1:354929/1‑140 (MQ=255)
                                                                       ggtgCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGccc                                                               >  2:1850281/1‑140 (MQ=255)
                                                                        gtgCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    >  2:454933/1‑134 (MQ=255)
                                                                        gtgCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCt                                                                    <  1:454933/134‑1 (MQ=255)
                                                                           cACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCtata                                                           <  2:1125108/140‑1 (MQ=255)
                                                                             ccGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAAc                                                         >  1:400503/1‑140 (MQ=255)
                                                                                  ccGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCg                                                    <  2:3753/140‑1 (MQ=255)
                                                                                  ccGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCg                                                    <  1:1659125/140‑1 (MQ=255)
                                                                                  ccGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCg                                                    <  1:1188923/140‑1 (MQ=255)
                                                                                   cGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCgg                                                   >  1:64129/1‑140 (MQ=255)
                                                                                     cATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGAt                                                 >  1:713255/1‑140 (MQ=255)
                                                                                     cATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGAt                                                 >  2:2032033/1‑140 (MQ=255)
                                                                                         gTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGttt                                             <  1:1850281/140‑1 (MQ=255)
                                                                                          tttATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTa                                            >  1:131388/1‑140 (MQ=255)
                                                                                            tATTGCGTGAAGCCGCTCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTAct                                          >  1:238517/1‑140 (MQ=255)
                                                                                               tGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTg                                       >  2:1556985/1‑140 (MQ=255)
                                                                                                   tGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGc                                   >  1:641760/1‑140 (MQ=255)
                                                                                                   tGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGc                                   >  2:1184012/1‑140 (MQ=255)
                                                                                                      aGCCGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGc                                >  1:1402150/1‑140 (MQ=255)
                                                                                                        ccGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAg                              <  2:713255/140‑1 (MQ=255)
                                                                                                         cGATCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGc                             >  1:124504/1‑140 (MQ=255)
                                                                                                           aTCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTg                           >  1:1999967/1‑140 (MQ=255)
                                                                                                           aTCGGGTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTg                           <  1:372032/140‑1 (MQ=255)
                                                                                                                gTATTGATTGATGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTg                      <  2:46505/140‑1 (MQ=255)
                                                                                                                   ttgattgaTGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGct                   >  1:134324/1‑140 (MQ=255)
                                                                                                                     gattgatGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGctct                 <  1:866079/140‑1 (MQ=255)
                                                                                                                      attgatGATGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGctctc                >  2:457845/1‑140 (MQ=255)
                                                                                                                       ttgatGATGGTTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGTAGCTGGACTGGctctct               <  2:1560077/140‑1 (MQ=255)
                                                                                                                         gatgatGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCttt             >  2:962997/1‑140 (MQ=255)
                                                                                                                         gatgatGGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCttt             >  1:1551861/1‑140 (MQ=255)
                                                                                                                          atgatgGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGa                         >  2:827274/1‑127 (MQ=255)
                                                                                                                          atgatgGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGc                    >  2:2097509/1‑132 (MQ=255)
                                                                                                                          atgatgGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGc                    <  1:2097509/132‑1 (MQ=255)
                                                                                                                          atgatgGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCtttt            >  2:142640/1‑139 (MQ=255)
                                                                                                                          atgatgGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCtttt            >  2:151925/1‑139 (MQ=255)
                                                                                                                          atgatgGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCtttt            >  1:206423/1‑139 (MQ=255)
                                                                                                                          atgatgGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCTttg            <  2:124504/140‑1 (MQ=255)
                                                                                                                          atgatgGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCTttg            <  1:1644987/140‑1 (MQ=255)
                                                                                                                           tgatgGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACATCCGGATGTTTACTCTGATTCGGCAGCTGGACTGGCTCTCTttgt           >  1:398909/1‑140 (MQ=255)
                                                                                                                            gatgGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCTttgtt          <  2:1999967/140‑1 (MQ=255)
                                                                                                                            gatgGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCTttgtt          <  2:400503/140‑1 (MQ=255)
                                                                                                                            gatgGCTGGCTTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCTttgtt          <  2:1402150/140‑1 (MQ=255)
                                                                                                                               ggctggctTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCTTTGTTGaa       >  1:1427512/1‑140 (MQ=255)
                                                                                                                               ggctggctTGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCTTTGTTGaa       >  2:756683/1‑140 (MQ=255)
                                                                                                                                gctggcttGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCTTTGTTGAAt      >  2:1323344/1‑140 (MQ=255)
                                                                                                                                    gcttgTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCTTTGTTGAATTTTg  <  2:641760/140‑1 (MQ=255)
                                                                                                                                    gcttgTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCTTTGTTGAATTTTg  <  1:1880823/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
GGCGGACCCACTTCATCTTCCTTTTGCCGATAAATCCGTTGATGTTTGTCTACTGGCACATACATTGCCGTGGTGCACCGATCCGCATCGTTTATTGCGTGAAGCCGATCGGGTATTGATTGATGATGGCTGGCTGGTCATTAGTGGCTTCAATCCCATCAGTTTTATGGGATTACGCAAACTTGTGCCGGTATTGCGCAAAACCTCGCCCTATAACAGCCGGATGTTTACTCTGATGCGGCAGCTGGACTGGCTCTCTTTGTTGAATTTTG  >  NC_000913/235049‑235320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A