Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F55 I0 R1
|
2523 |
96.7 |
4820918 |
92.8% |
4473811 |
133.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_002947 |
5,610,105 |
C→G |
75.8% |
G154A (GGC→GCC) |
PP_4929 ← |
LysR family transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 5,610,105 | 0 | C | G | 75.8%
| 217.1
/ 84.5
| 120 | G154A (GGC→GCC) | PP_4929 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (16/13); new base G (46/45); total (62/58) |
| Fisher's exact test for biased strand distribution p-value = 6.77e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.57e-01 |
Only 100 of 124 total aligned reads displayed.
CAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTC > NC_002947/5609957‑5610244
|
cAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGcc > 2:1354623/1‑150 (MQ=255)
aaCTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGgcc > 1:1789686/1‑150 (MQ=255)
tGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGa > 1:1091323/1‑150 (MQ=255)
ggTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCgg < 2:1736526/150‑1 (MQ=255)
aaTTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACTCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTcc > 1:194870/1‑150 (MQ=255)
aaTTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTcc > 2:1611701/1‑150 (MQ=255)
aTTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTcca < 2:1497078/150‑1 (MQ=255)
ttgttgGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTccac < 2:1789600/150‑1 (MQ=255)
ttgttgGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTccac < 2:1789686/150‑1 (MQ=255)
gggTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTgc > 1:1075147/1‑150 (MQ=255)
gggTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTgc < 1:888559/150‑1 (MQ=255)
cccGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCca < 2:1639410/150‑1 (MQ=255)
ggCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTTACCATCTCCACGCTGCCTACCGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACAt > 1:53747/1‑150 (MQ=255)
ggCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACAt > 1:2009210/1‑150 (MQ=255)
cgccacccgccAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGc > 1:84629/6‑150 (MQ=255)
ttCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGcc < 1:1611701/150‑1 (MQ=255)
ttCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGCCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGcc > 2:614480/1‑150 (MQ=255)
gcccgccAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTg < 2:1357425/150‑1 (MQ=255)
gcccgccAGCGGGTGGCCGACCGCGCACACCGTGACCATACCCACGCTGCTCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTg < 1:1967756/150‑1 (MQ=255)
cccgccAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTgg < 2:199250/150‑1 (MQ=255)
ccgccAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTggg > 2:1991844/1‑150 (MQ=255)
cAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTcc > 1:1526306/1‑150 (MQ=255)
tGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGcc < 2:766400/150‑1 (MQ=255)
ggCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCa < 2:1526306/150‑1 (MQ=255)
gCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGTACGCCGCTGGCCAg > 1:1099364/1‑150 (MQ=255)
cGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACCTCGCCCTGGGCTCCGCTGGCCAGtt > 1:354460/1‑150 (MQ=255)
cGACAGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGtt > 2:92806/1‑150 (MQ=255)
gACCGCGCAGACCGTGACCATTTCCACGCTGCCCAACCCACAGCGCTCTATGGAAGCCGGGATGATGTCGTGGAGGAAGAACAGGGCCGGATCGCCGCGCCGCTCCACCAGCTCGCGCGACATATCGCCCTGGGCTCCGCTGGCCAGTTg < 2:354460/150‑1 (MQ=255)
aCCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGc < 1:1747391/150‑1 (MQ=255)
ccGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCa < 2:77512/150‑1 (MQ=255)
cacaCCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTcc < 2:53747/150‑1 (MQ=255)
caaacCGTCACCCCCTCCTCGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGCTCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTcc < 2:1099364/147‑1 (MQ=255)
acacCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCa > 2:1743182/1‑150 (MQ=255)
cacCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAg < 1:92806/150‑1 (MQ=255)
ccGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACGGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGa > 1:2353595/1‑150 (MQ=255)
cGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGaa > 1:2033867/1‑150 (MQ=255)
gACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACgg < 2:2067595/150‑1 (MQ=255)
aCCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGCTCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACggg < 2:1666411/150‑1 (MQ=255)
aCCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACggg < 2:1091323/150‑1 (MQ=255)
ccATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGt > 1:1888123/1‑150 (MQ=255)
cATCTCCACGCTGCCCACCGCACGGCGCTCCAAGGAAGCCGGGCTGCTTTCGTGGAGGAAGACCAGGGACAGATCGGGGCGCCGCTCCACCAGCTTGCAAGCCACATCGAACGCGGCTCCGCCGCCCAGTTGCACCCCCAGCTACgggga > 2:2156964/1‑148 (MQ=255)
aTCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACGGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAg < 2:2353595/150‑1 (MQ=255)
tcCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTcc > 1:1383154/1‑84 (MQ=255)
ccACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGc > 1:1236460/1‑150 (MQ=255)
ccACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGc < 1:1630548/150‑1 (MQ=255)
cACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGTATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCt > 2:1347952/1‑150 (MQ=255)
cACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGcgccgc < 2:1267883/79‑1 (MQ=255)
cACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGcgccgc > 1:1267883/1‑79 (MQ=255)
gCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTc > 2:1063770/1‑148 (MQ=255)
gCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTc < 1:1063770/148‑1 (MQ=255)
tgaccAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCa > 2:2400938/4‑150 (MQ=255)
ccAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCTGTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGtt < 1:1249832/150‑1 (MQ=255)
ccAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTg < 1:2206646/100‑1 (MQ=255)
ccAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGtt > 2:2351281/1‑150 (MQ=255)
aaCGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGc > 2:93525/1‑52 (MQ=255)
aaCGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGcc > 2:1461692/1‑144 (MQ=255)
aaCGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGcc < 1:1461692/144‑1 (MQ=255)
aaCGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTtcg > 1:2216020/1‑150 (MQ=255)
aaCGCACGGCGCTCCAAGGAAGCCGGGATAATTTCATAGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCCGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTtcg > 2:885137/1‑150 (MQ=255)
aCGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCAc < 2:347023/114‑1 (MQ=255)
aCGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCAc > 1:347023/1‑114 (MQ=255)
aCGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAg < 1:1743182/150‑1 (MQ=255)
aCGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAg > 1:1820076/1‑150 (MQ=255)
aCGGCGCTCCAAGGAAGCCGGGATGCTTCCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAg > 1:2244876/1‑150 (MQ=255)
ctgcgcTCCAAGGAAGCCGGGATGCTTGCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCAACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAgg < 2:431177/148‑1 (MQ=255)
cGGCGCTCCAAGGAAGCCGGTATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAgg < 1:1347952/150‑1 (MQ=255)
ggCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGc > 1:1816481/1‑150 (MQ=255)
ggCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCa < 2:347278/105‑1 (MQ=255)
ggCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCa > 1:347278/1‑105 (MQ=255)
gcTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGt < 1:991979/150‑1 (MQ=255)
gcTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGt < 1:254333/150‑1 (MQ=255)
ccAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAg > 2:2072803/1‑122 (MQ=255)
ccAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAg < 1:2072803/122‑1 (MQ=255)
cAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGc < 2:1978454/122‑1 (MQ=255)
cAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGAt > 2:732591/1‑150 (MQ=255)
cAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCACCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGc > 1:1978454/1‑122 (MQ=255)
cAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTc > 2:409291/1‑147 (MQ=255)
cAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTc < 1:409291/147‑1 (MQ=255)
cAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGAt > 2:2115900/1‑150 (MQ=255)
gAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCAcc < 1:2153273/150‑1 (MQ=255)
gggATGCTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGa < 2:2009210/150‑1 (MQ=255)
cTTTCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATaacca < 1:695453/150‑5 (MQ=255)
tttCGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTTGATCACCGGCTGATACGGCa > 2:794250/1‑150 (MQ=255)
tttCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACAt < 2:2387669/60‑1 (MQ=255)
tttCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACAt > 1:2387669/1‑60 (MQ=255)
tttCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCa > 1:670922/1‑150 (MQ=255)
cGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATgg < 2:1938973/150‑1 (MQ=255)
cGTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCCCCAGTTCGTCGAGGCCGTCGATCACCGGCTGATACGGCATgg > 1:1630336/1‑150 (MQ=255)
gTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTg < 2:382358/138‑1 (MQ=255)
gTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTg > 1:382358/1‑138 (MQ=255)
gTGGAGGAAGAACAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGa > 1:1975043/1‑139 (MQ=255)
gaggaAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTc < 1:2400938/150‑1 (MQ=255)
gaagaaCAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGGGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGACTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTc > 1:2295816/1‑150 (MQ=255)
gaagaaCAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTc < 1:2093256/150‑1 (MQ=255)
gaagaaCAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTc > 2:1770631/1‑150 (MQ=255)
gaagaaCAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCAt < 2:1146259/141‑1 (MQ=255)
gaagaaCAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCAt > 1:1146259/1‑141 (MQ=255)
agaaCAGGGCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGa > 2:2191380/1‑131 (MQ=255)
cAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAgg > 2:863750/1‑109 (MQ=255)
cAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAgg < 1:863750/109‑1 (MQ=255)
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CAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGATACGGCATGGCTTCGTC > NC_002947/5609957‑5610244
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
