Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F60 I0 R1
|
1078 |
79.7 |
3885236 |
94.2% |
3659892 |
134.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_002947 |
5,610,088 |
C→A |
84.5% |
E160* (GAA→TAA) |
PP_4929 ← |
LysR family transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 5,610,088 | 0 | C | A | 84.5%
| 219.8
/ 35.4
| 98 | E160* (GAA→TAA) | PP_4929 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (6/9); new base A (40/42); total (46/52) |
| Fisher's exact test for biased strand distribution p-value = 5.85e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 |
TTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGA > NC_002947/5609942‑5610227
|
ttgtGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTg < 2:1922327/150‑1 (MQ=255)
ttgtGGCGTGATCAGCAACTGCACATTTCGGGTCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCACTCCAAGGAAGCCGGGATGCTTTAGTg < 1:492084/150‑1 (MQ=255)
gtgGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTgga < 1:1386858/150‑1 (MQ=255)
gtgGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTgga < 1:55021/150‑1 (MQ=255)
gtgGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTgga < 1:401248/150‑1 (MQ=255)
tgGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTggag < 2:1190295/150‑1 (MQ=255)
gCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTggagga > 1:1770832/1‑150 (MQ=255)
gATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGgaagaa < 1:163131/150‑1 (MQ=255)
aTCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAAc < 1:1751802/150‑1 (MQ=255)
aTCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAAc > 1:1629350/1‑150 (MQ=255)
cAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAg < 2:135097/150‑1 (MQ=255)
cAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACCGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAg < 1:1169226/150‑1 (MQ=255)
aGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAgg > 1:1641024/1‑150 (MQ=255)
aGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAgg > 1:204216/1‑150 (MQ=255)
aGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAgg > 1:1501239/1‑150 (MQ=255)
gCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGTTGCCCAACGCACGGCGCTCCAAGGCAGCAGGGATGCTTTAGTGGAGGAAGAACAGGc < 1:676969/150‑1 (MQ=255)
gCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGc < 1:1283615/150‑1 (MQ=255)
gCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGc > 1:71815/1‑150 (MQ=255)
aaCTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGccc < 2:594834/150‑1 (MQ=255)
ccGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATc > 2:288631/1‑150 (MQ=255)
gCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGgcgcg > 2:1749944/1‑150 (MQ=255)
cGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGgcgcgc < 1:1103695/150‑1 (MQ=255)
aTTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTcca < 2:1770832/150‑1 (MQ=255)
ttgttgGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCACACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTg < 1:69428/114‑1 (MQ=255)
ttgttgGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCACACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTg > 2:69428/1‑114 (MQ=255)
gttgGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTccacca < 2:1003532/150‑1 (MQ=255)
ttgGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAg > 1:1721555/1‑150 (MQ=255)
ttgGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAg > 2:421256/1‑150 (MQ=255)
ggCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGGTTTAGTGGAGGAAGAACAGGCCCa > 2:1298473/1‑126 (MQ=255)
ggCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCa < 1:1298473/126‑1 (MQ=255)
cGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCACCACGCTGTGCAACGCACCGCGATCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTg < 1:137229/150‑1 (MQ=255)
gggTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCTCTCCACCAGCTTgc < 2:664938/150‑1 (MQ=255)
gTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTgcgc < 2:265963/150‑1 (MQ=255)
gTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGATTTGGTTGATGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTgcgc < 1:338802/150‑1 (MQ=255)
ccGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCcac > 2:1563580/1‑150 (MQ=255)
cGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTGCAAGTAAGCCGGGGTGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCcaca > 1:1260103/1‑150 (MQ=255)
gCCTTCCCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATc > 2:1273388/1‑150 (MQ=255)
cTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGc > 1:1591688/1‑150 (MQ=255)
ttCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCt < 2:894300/134‑1 (MQ=255)
ttCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCt > 1:894300/1‑134 (MQ=255)
ttCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGcc > 1:534870/1‑150 (MQ=255)
ttCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGcc > 2:1461691/1‑150 (MQ=255)
tcccccgccAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGccc < 1:1273388/147‑1 (MQ=255)
gcccgccAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTg > 2:1000350/1‑150 (MQ=255)
gcccgccAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTg < 2:534870/150‑1 (MQ=255)
gcccgccAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTg < 1:741109/150‑1 (MQ=255)
cgccAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCATTAGAGGAGGACGTAACTATCCAGATCTCCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGc > 1:1400591/1‑150 (MQ=255)
gccAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCt > 2:1768732/1‑150 (MQ=255)
ccAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTc > 2:1066238/1‑150 (MQ=255)
aGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGcc < 1:552233/140‑1 (MQ=255)
aGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGcc > 2:552233/1‑140 (MQ=255)
gCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGc < 1:858220/150‑1 (MQ=255)
ggTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTcca < 2:1839083/114‑1 (MQ=255)
ggTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTcca > 1:1839083/1‑114 (MQ=255)
ggCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCa > 2:514394/1‑150 (MQ=255)
gCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAg > 1:1211470/1‑150 (MQ=255)
cGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGtt < 2:1211470/150‑1 (MQ=255)
cgcgCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCAAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCAc < 2:1592047/150‑1 (MQ=255)
acacCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCa < 1:1768732/150‑1 (MQ=255)
acacCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCa < 2:1629350/150‑1 (MQ=255)
cGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCCGTTGCACCTCCAGGaa > 2:801288/1‑150 (MQ=255)
gTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAAc < 2:204216/150‑1 (MQ=255)
ccATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGt > 2:1263850/1‑150 (MQ=255)
cATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTa > 1:1659487/1‑150 (MQ=255)
tctcCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCCTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGc < 1:802289/150‑1 (MQ=255)
ccACGCTGCCCAACGCACGGCGCTCCAGCTGAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGc > 1:542788/1‑150 (MQ=255)
ccACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGc > 2:1130635/1‑150 (MQ=255)
cACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCt > 2:1728829/1‑150 (MQ=255)
cACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTgg < 2:881761/109‑1 (MQ=255)
cACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTgg > 1:881761/1‑109 (MQ=255)
cACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAg > 1:1260013/1‑135 (MQ=255)
cACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAg < 2:1260013/135‑1 (MQ=255)
aCGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTc < 1:249714/150‑1 (MQ=255)
gCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGc < 1:874589/150‑1 (MQ=255)
ccAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGc < 2:613582/145‑1 (MQ=255)
ccAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGc > 1:613582/1‑145 (MQ=255)
cAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTtc < 1:1263850/150‑1 (MQ=255)
cAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTtc < 1:1749944/150‑1 (MQ=255)
cgaaCGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTtcgtc < 1:1000350/147‑1 (MQ=255)
cGCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTtcgtc < 2:1400591/150‑1 (MQ=255)
gCACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTtcgtcg > 1:223554/1‑150 (MQ=255)
cACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGa > 1:1059392/1‑150 (MQ=255)
cACGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGa < 2:675519/150‑1 (MQ=255)
aCGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAg > 1:153669/1‑150 (MQ=255)
cGGCGCTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAgg < 2:1641024/150‑1 (MQ=255)
ggCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGc > 1:545466/1‑150 (MQ=255)
gcgcTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCt > 1:331339/1‑150 (MQ=255)
gcTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGt > 1:1898767/1‑150 (MQ=255)
gcTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGt < 2:1260103/150‑1 (MQ=255)
cTCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTc < 1:1596247/150‑1 (MQ=255)
tCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCg > 2:1633021/1‑150 (MQ=255)
tCCAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCg > 1:502323/1‑150 (MQ=255)
ccAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGa < 2:1591688/150‑1 (MQ=255)
ccAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGa < 1:514394/150‑1 (MQ=255)
cAAGGAAGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGAt > 2:170643/1‑150 (MQ=255)
cAAGGAAGCCGGGATGCTTTAGTGCCCGGACAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGAt < 1:972932/150‑1 (MQ=255)
aGCCGGGATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCgg > 1:461126/1‑150 (MQ=255)
gggATGCTTTAGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGa < 1:1461691/150‑1 (MQ=255)
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TTGTGGCGTGATCAGCAACTGCCGGTGGCGGGCCAATTGTTGGCGGGTGACCCGGCCTTCGCCCGCCAGCGGGTGGCCGACCGCGCACACCGTGACCATCTCCACGCTGCCCAACGCACGGCGCTCCAAGGAAGCCGGGATGCTTTCGTGGAGGAAGAACAGGCCCAGATCGGCGCGCCGCTCCACCAGCTTGCGCGCCACATCGCCCTGGGCTCCGCTGGCCAGTTGCACCTCCAGGAACGGGTAGCGGCTCGCCAGTTCGTCGAGGCTGTCGATCACCGGCTGA > NC_002947/5609942‑5610227
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
