Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,392,487 |
T→C |
T194A (ACC→GCC) |
nuoL ← |
NADH dehydrogenase I chain L |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,392,487 | 0 | T | C | 98.5%
| 400.1
/ ‑2.4
| 132 | T194A (ACC→GCC) | nuoL | NADH dehydrogenase I chain L |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base C (61/69); total (61/71) |
| Fisher's exact test for biased strand distribution p-value = 4.99e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.84e-01 |
Only 100 of 136 total aligned reads displayed.
CAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGC > NC_000913/2392398‑2392576
|
cagcagCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGcc > 2:4604013/1‑93 (MQ=255)
cagcagCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGcc < 2:3642279/93‑1 (MQ=255)
cagcagCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGcc > 1:886586/1‑93 (MQ=255)
cgcagcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGccc < 1:1504116/92‑1 (MQ=255)
agcagcATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGccc > 2:2923840/1‑93 (MQ=255)
agcagcATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGccc > 2:4463160/1‑93 (MQ=255)
gcagcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCa > 2:252111/1‑93 (MQ=255)
gcagcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCa < 1:1889124/93‑1 (MQ=255)
cagcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAg < 2:3464571/93‑1 (MQ=255)
agcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGt > 1:3370089/1‑93 (MQ=255)
agcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGt > 1:2587166/1‑93 (MQ=255)
gcaTCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGtt > 2:2232479/1‑93 (MQ=255)
tCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGt < 1:559898/93‑1 (MQ=255)
cAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGtt < 1:1278215/93‑1 (MQ=255)
cAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGtt < 1:2212527/93‑1 (MQ=255)
cAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGtt < 2:2798405/93‑1 (MQ=255)
gCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGt > 1:3468593/1‑93 (MQ=255)
tCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTaaa < 1:3895960/93‑1 (MQ=255)
cGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAg > 1:4690744/1‑93 (MQ=255)
cGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAg > 1:3692733/1‑93 (MQ=255)
gCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGa > 1:1054283/1‑93 (MQ=255)
gCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGa > 1:1179017/1‑93 (MQ=255)
cccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAACGaa < 1:4102195/93‑1 (MQ=255)
cccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGaa < 1:1125045/93‑1 (MQ=255)
cccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGaa < 1:241980/93‑1 (MQ=255)
cccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGaa < 2:1320517/93‑1 (MQ=255)
ccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAt < 1:436506/93‑1 (MQ=255)
ccACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAt < 2:415421/93‑1 (MQ=255)
cacaTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGTAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATg > 1:4580093/1‑93 (MQ=255)
cacaTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATg < 2:397021/93‑1 (MQ=255)
acaTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGa > 1:545210/1‑93 (MQ=255)
acaTCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGa < 2:1169304/93‑1 (MQ=255)
tCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACa < 2:4162901/93‑1 (MQ=255)
cAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTGGTAAAGAATGAACAg < 2:3862181/93‑1 (MQ=255)
cAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAg > 1:3893956/1‑93 (MQ=255)
aGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGt > 1:3677658/1‑93 (MQ=255)
aGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGt < 1:2191927/93‑1 (MQ=255)
aGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGt > 2:262224/1‑93 (MQ=255)
gCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTg > 1:3230383/1‑93 (MQ=255)
gCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTCCGTTGTAAAGAATGAACAGTg > 2:4380444/1‑93 (MQ=255)
gCATGTTATTGCCGTCAGCAAAGTGCGCTGGTCCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTg > 2:1001752/1‑93 (MQ=255)
cATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGc < 1:3537090/93‑1 (MQ=255)
ctGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCg < 1:608180/92‑1 (MQ=255)
aTGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCg < 2:4610667/93‑1 (MQ=255)
aTGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCg < 2:757508/93‑1 (MQ=255)
aTGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCg > 2:3296151/1‑93 (MQ=255)
tGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGa > 1:3389865/1‑93 (MQ=255)
tGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGa < 2:1607409/93‑1 (MQ=255)
ttATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGaaa < 2:2361852/93‑1 (MQ=255)
aTTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGc < 1:1595828/93‑1 (MQ=255)
aTTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGc > 2:4140409/1‑93 (MQ=255)
tGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGa < 1:2578164/93‑1 (MQ=255)
gCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGCTCGTTGTAAAGAATGAACAGTGCGAAagagag > 2:1951890/1‑93 (MQ=255)
gTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGaa < 2:1154636/93‑1 (MQ=255)
cAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAaca > 2:751399/1‑93 (MQ=255)
cAGCAAAGTGCCCTGGTGCCAGTTCCCCCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAaca < 1:4096898/93‑1 (MQ=255)
aGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGCTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAacac < 2:4451146/93‑1 (MQ=255)
cAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGt > 1:2878797/1‑93 (MQ=255)
tGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCAccc < 1:1630566/93‑1 (MQ=255)
gcgcTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCca > 1:1211858/1‑93 (MQ=255)
cgcTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCcac > 2:1636071/1‑93 (MQ=255)
cTGGTGCCAGTTCCCCCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCacac < 1:3882060/93‑1 (MQ=255)
cTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCacac > 2:3716403/1‑93 (MQ=255)
cTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCacac < 1:3882059/93‑1 (MQ=255)
ggTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACgg < 1:3851368/93‑1 (MQ=255)
gTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGCAAGCGAGGAACACGTCACCAACACggg > 1:3710401/1‑93 (MQ=255)
tGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGt > 2:1101578/1‑93 (MQ=255)
gCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTc > 1:3496827/1‑93 (MQ=255)
gCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTc > 1:40207/1‑93 (MQ=255)
ccAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCa < 1:507047/93‑1 (MQ=255)
ccAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGGTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCa > 1:3025532/1‑93 (MQ=255)
cAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCac > 1:383063/1‑93 (MQ=255)
cAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCac < 2:1127507/93‑1 (MQ=255)
cAGATCCACCATTTCGCTGAAGTTCAGGGCGCCCTGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCac < 2:2539137/93‑1 (MQ=255)
gTTCCACCATTTCGCGGAAGGTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTACGAAAGCGAGGAACACGTCACCCACACGGGGCacga > 1:693182/1‑93 (MQ=255)
ttCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCacgac > 2:402317/1‑93 (MQ=255)
tCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCacgacg > 1:3889403/1‑93 (MQ=255)
cccccaTTTCGCGGAAGTTCAGGGCGCCCGGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTTACCCACACGGGTCAcgacga < 1:109424/90‑1 (MQ=255)
caccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGaa > 2:3847924/1‑93 (MQ=255)
caccaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGaa > 1:2379484/1‑93 (MQ=255)
cccaTTTCGCGGAAGTTCAGGGCGCACAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAAc < 1:1057427/92‑1 (MQ=255)
accaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAAc > 1:4269937/1‑93 (MQ=255)
accaTTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAAc > 2:1366924/1‑93 (MQ=255)
ccaGTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACg < 2:3137335/93‑1 (MQ=255)
tttCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCtt > 2:4570675/1‑93 (MQ=255)
tgtCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCtt < 1:3596282/91‑1 (MQ=255)
tCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTc < 2:1888274/93‑1 (MQ=255)
cgcgGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCa < 1:4441276/93‑1 (MQ=255)
gcgGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAt < 2:3843895/93‑1 (MQ=255)
cgGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAtt < 1:3971232/93‑1 (MQ=255)
ggAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTg > 2:358044/1‑93 (MQ=255)
gAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGc > 1:2756817/1‑93 (MQ=255)
aGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCg > 2:1308984/1‑93 (MQ=255)
gTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGc > 1:4462633/1‑93 (MQ=255)
gTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGc < 1:2979664/93‑1 (MQ=255)
gTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGc < 1:2956331/93‑1 (MQ=255)
tCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTg < 1:1979194/93‑1 (MQ=255)
cAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTgc < 1:4325332/93‑1 (MQ=255)
cAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTgc < 1:1101282/93‑1 (MQ=255)
gggCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTgcgc < 1:1148107/93‑1 (MQ=255)
|
CAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGC > NC_000913/2392398‑2392576
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCAT > NC_000913/2392395‑2392579
|
GCCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCG > SRR4302544.3606709/1‑94 (MQ=60)
CCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCC > SRR4302544.895369/1‑94 (MQ=60)
CGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCA < SRR4302544.1519011/94‑1 (MQ=60)
GCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAG < SRR4302544.1907372/94‑1 (MQ=60)
CAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGT > SRR4302544.2612051/1‑94 (MQ=60)
CAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGT > SRR4302544.3402264/1‑94 (MQ=60)
TCAGCTTCCCCCACATCAGCATGTTATTCCCTTCAGCAAAGTGCCCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTT < SRR4302544.2696755/94‑1 (MQ=60)
TCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTT < SRR4302544.565369/94‑1 (MQ=60)
CAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTG < SRR4302544.2233347/94‑1 (MQ=60)
CAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTG < SRR4302544.1290801/94‑1 (MQ=60)
AGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGT > SRR4302544.3501674/1‑94 (MQ=60)
TCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAG > SRR4302544.4737086/1‑94 (MQ=60)
TCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAG > SRR4302544.3729524/1‑94 (MQ=60)
TCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAG < SRR4302544.3934658/94‑1 (MQ=60)
CGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGA > SRR4302544.1064734/1‑94 (MQ=60)
CGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGA > SRR4302544.1190761/1‑94 (MQ=60)
CCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAACGAAT < SRR4302544.4143005/94‑1 (MQ=60)
CCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAT < SRR4302544.1136255/94‑1 (MQ=60)
CCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAT < SRR4302544.244496/94‑1 (MQ=60)
CCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAAT < SRR4302544.244497/94‑1 (MQ=60)
CCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGTAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATG > SRR4302544.4625709/1‑94 (MQ=60)
CCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATG < SRR4302544.440899/94‑1 (MQ=60)
CACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGA > SRR4302544.1186641/1‑94 (MQ=60)
CACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGA > SRR4302544.550565/1‑94 (MQ=60)
TCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAG > SRR4302544.1691070/1‑94 (MQ=60)
TCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAG > SRR4302544.3932640/1‑94 (MQ=60)
CAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGT > SRR4302544.3714339/1‑94 (MQ=60)
AGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTG < SRR4302544.2212620/94‑1 (MQ=60)
AGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTG > SRR4302544.3261292/1‑94 (MQ=60)
CATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCG < SRR4302544.3570930/94‑1 (MQ=60)
AATGTTATTGCCGTCAGCAAAGTGCGCTGGGGCCAGTGCCCCCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCG < SRR4302544.956470/94‑1 (MQ=60)
CTGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGA < SRR4302544.614150/94‑1 (MQ=60)
ATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGA > SRR4302544.3422262/1‑94 (MQ=60)
ATGGTATTTCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGA < SRR4302544.614149/94‑1 (MQ=60)
TTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAG < SRR4302544.3456262/94‑1 (MQ=60)
TTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAG > SRR4302544.373718/1‑94 (MQ=60)
ATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCG < SRR4302544.1611545/94‑1 (MQ=60)
TGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAG < SRR4302544.3958039/94‑1 (MQ=60)
TGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAG < SRR4302544.2602927/94‑1 (MQ=60)
TCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGG < SRR4302544.4491373/94‑1 (MQ=60)
CAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCTCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACAC < SRR4302544.4137671/94‑1 (MQ=60)
CAGCAAAGTGCCCTGGTGCCAGTTCCCCCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACAC < SRR4302544.4137670/94‑1 (MQ=60)
GCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGT > SRR4302544.2906583/1‑94 (MQ=60)
TGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCA > SRR4302544.1223855/1‑94 (MQ=60)
TGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCA < SRR4302544.1646615/94‑1 (MQ=60)
TGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCA < SRR4302544.3217597/94‑1 (MQ=60)
CGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACA > SRR4302544.1442356/1‑94 (MQ=60)
CTGGTGCCAGTTCCCCCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACG < SRR4302544.3920613/94‑1 (MQ=60)
CTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACG < SRR4302544.3920612/94‑1 (MQ=60)
GGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGCAAGCGAGGAACACGTCACCAACACGGG > SRR4302544.3747310/1‑94 (MQ=60)
GGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGG < SRR4302544.3889596/94‑1 (MQ=60)
TGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTC > SRR4302544.3530170/1‑94 (MQ=60)
TGCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTC > SRR4302544.40608/1‑94 (MQ=60)
GCCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGGTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCA > SRR4302544.3054520/1‑94 (MQ=60)
CCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCAC < SRR4302544.512031/94‑1 (MQ=60)
CCAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCAC > SRR4302544.386963/1‑94 (MQ=60)
CAGTTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACG < SRR4302544.4391499/94‑1 (MQ=60)
AGTTCCACCATTTCGCGGAAGGTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTACGAAAGCGAGGAACACGTCACCCACACGGGGCACGA > SRR4302544.700085/1‑94 (MQ=60)
TTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTACAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACCCGGGTCACGACA > SRR4302544.3928035/1‑94 (MQ=60)
TTCCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACG > SRR4302544.3928036/1‑94 (MQ=60)
CCCCCATTTCGCGGAAGTTCAGGGCGCCCGGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTTACCCACACGGGTCACGACGAA < SRR4302544.110425/94‑1 (MQ=60)
CCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAA < SRR4302544.110426/94‑1 (MQ=60)
CCACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAA > SRR4302544.2402016/1‑94 (MQ=60)
CACCATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAAC > SRR4302544.4313514/1‑94 (MQ=60)
CCCATTTCGCGGAAGTTCAGGGCGCACAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACG < SRR4302544.1067924/94‑1 (MQ=60)
CATTTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCT > SRR4302544.3889944/1‑94 (MQ=60)
TGTCGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTT < SRR4302544.3630889/94‑1 (MQ=60)
CGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAT < SRR4302544.4486051/94‑1 (MQ=60)
CGCGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCAT < SRR4302544.495089/94‑1 (MQ=60)
CGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTG < SRR4302544.4010734/94‑1 (MQ=60)
CGGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTG > SRR4302544.3602571/1‑94 (MQ=60)
GGAAGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGC > SRR4302544.2783352/1‑94 (MQ=60)
AGTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGC > SRR4302544.4507546/1‑94 (MQ=60)
GTTCAGGGCGCCCAGTTCGTTGTAAAGAATGACCAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCT < SRR4302544.2041186/94‑1 (MQ=60)
GTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCT > SRR4302544.2985394/1‑94 (MQ=60)
GTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCT < SRR4302544.3008240/94‑1 (MQ=60)
GTTCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCT < SRR4302544.2984720/94‑1 (MQ=60)
TCAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGC < SRR4302544.1998422/94‑1 (MQ=60)
CAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCG < SRR4302544.1112252/94‑1 (MQ=60)
CAGGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCG < SRR4302544.4369377/94‑1 (MQ=60)
GGGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCC < SRR4302544.1159526/94‑1 (MQ=60)
GGCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCA < SRR4302544.2346573/94‑1 (MQ=60)
GCGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCAT > SRR4302544.51915/1‑94 (MQ=60)
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GCCCAGCAGCATCAGCGTCGCCCACATCAGCATGTTATTGCCGTCAGCAAAGTGCGCTGGTGCCAGTTCCACCATTTCGCGGAAGTTCAGGGTGCCCAGTTCGTTGTAAAGAATGAACAGTGCGAAAGCGAGGAACACGTCACCCACACGGGTCACGACGAACGCTTTCATTGCCGCTGCGCCAT > NC_000913/2392395‑2392579
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
