Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F121 I0 R1 856 273.6 9081716 94.1% 8545894 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,663,893 C→T 16.4% intergenic (‑44/‑63) ynfL ← / → ynfM LysR family putative transcriptional regulator/putative arabinose efflux transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,663,8930CT16.4% 648.2 / 104.5 244intergenic (‑44/‑63)ynfL/ynfMLysR family putative transcriptional regulator/putative arabinose efflux transporter
Reads supporting (aligned to +/- strand):  ref base C (86/117);  new base T (22/18);  total (109/135)
Fisher's exact test for biased strand distribution p-value = 1.65e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01

Only 100 of 251 total aligned reads displayed.

GACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATTTATTAAACGC  >  CP009273/1663744‑1664042
                                                                                                                                                     |                                                                                                                                                     
gACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAAc                                                                                                                                                       >  1:1303708/1‑150 (MQ=255)
 aCTTAGCGGCGGTTGCGAAATAGTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACACAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACa                                                                                                                                                      <  2:4165132/150‑1 (MQ=255)
   ttAGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAAt                                                                                                                                                    <  1:811278/150‑1 (MQ=255)
    tAGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAAtt                                                                                                                                                   <  2:1619658/150‑1 (MQ=255)
     aGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTc                                                                                                                                                  <  2:709562/150‑1 (MQ=255)
     aGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTc                                                                                                                                                  <  2:4032723/150‑1 (MQ=255)
     aGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTc                                                                                                                                                  <  2:3439951/150‑1 (MQ=255)
      gcggcgGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCg                                                                                                                                                 <  2:4271438/150‑1 (MQ=255)
       cggcggTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGa                                                                                                                                                <  1:516992/150‑1 (MQ=255)
       cggcggTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGa                                                                                                                                                <  1:3805451/150‑1 (MQ=255)
        ggcggTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAATAATTCGAt                                                                                                                                               >  2:4458975/1‑150 (MQ=255)
        ggcggTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGAt                                                                                                                                               <  1:1731194/150‑1 (MQ=255)
        ggcggTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGAt                                                                                                                                               >  2:4521548/1‑150 (MQ=255)
           ggTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGAtttt                                                                                                                                            <  2:1344225/150‑1 (MQ=255)
                   aaTATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCt                                                                                                                                    <  1:2673064/150‑1 (MQ=255)
                   aaTATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCt                                                                                                                                    <  2:2354118/150‑1 (MQ=255)
                    atatTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTa                                                                                                                                   <  1:1731906/150‑1 (MQ=255)
                     tatTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTAt                                                                                                                                  >  1:3533785/1‑150 (MQ=255)
                      atTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATg                                                                                                                                 <  2:2742676/150‑1 (MQ=255)
                      atTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATg                                                                                                                                 <  2:4128513/150‑1 (MQ=255)
                              gggCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGcc                                                                                                                         <  2:2280961/150‑1 (MQ=255)
                                  aGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGAt                                                                                                                     <  1:2909798/150‑1 (MQ=255)
                                  aGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGAt                                                                                                                     >  2:357350/1‑150 (MQ=255)
                                  aGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGAt                                                                                                                     >  2:394177/1‑150 (MQ=255)
                                     ggcgCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTa                                                                                                                  <  1:2540460/150‑1 (MQ=255)
                                        gcgcCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAg                                                                                                               >  2:2759703/1‑150 (MQ=255)
                                        gcgcCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAg                                                                                                               >  2:2759624/1‑150 (MQ=255)
                                         cgcCCGAAATGCAGCTCTTCCGCAACCGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAgg                                                                                                              <  2:1437348/150‑1 (MQ=255)
                                         cgcCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAgg                                                                                                              <  1:2307145/150‑1 (MQ=255)
                                         cgcCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAgg                                                                                                              <  2:1007923/150‑1 (MQ=255)
                                         cgcCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAgg                                                                                                              >  2:918421/1‑150 (MQ=255)
                                              gAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCatat                                                                                                         >  1:1544059/1‑150 (MQ=255)
                                                  tGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAATAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAg                                                                                                     >  1:1075379/1‑150 (MQ=255)
                                                  tGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAg                                                                                                     <  1:3824577/150‑1 (MQ=255)
                                                      gCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAg                                                                                                 <  2:1574590/150‑1 (MQ=255)
                                                         ctaccGCAACAGCAACAAAGTAACGCAGATGAAGAATTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGAt                                                                                              <  2:2626313/147‑1 (MQ=255)
                                                              gcaacagcaacaAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCaa                                                                                         <  1:2102318/150‑1 (MQ=255)
                                                               caacagcaacaAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAATAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAg                                                                                        <  2:3679687/150‑1 (MQ=255)
                                                               caacagcaacaAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAg                                                                                        >  1:3633916/1‑150 (MQ=255)
                                                               caacagcaacaAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAg                                                                                        >  1:1844391/1‑150 (MQ=255)
                                                                  cagcaacaAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAATAATTCGATTTTCCTACCCGATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGa                                                                                     <  2:2502324/150‑1 (MQ=255)
                                                                     caacaaAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGcc                                                                                  <  1:3243870/150‑1 (MQ=255)
                                                                      aacaaAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGAGTATTAATATATTAGACAGAACGATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATCTTTAGCAAGGATTTCAAGTGAGCCg                                                                                 >  1:3993661/1‑150 (MQ=255)
                                                                       acaaAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGt                                                                                >  1:948708/1‑150 (MQ=255)
                                                                         aaaGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAATAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGtac                                                                              <  1:1441599/150‑1 (MQ=255)
                                                                          aaGTAACGCAGATGACGAAGTTAAATATTCATATTTAAAAAATAGTATTTTAGATTATTAATATATTAGACAGAAAAATTCGATTTTCCTACCCTATGTATAATCATGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCAGtact                                                                             >  1:123004/1‑150 (MQ=255)
                                                                             tAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACa                                                                          <  1:4139500/150‑1 (MQ=255)
                                                                                cGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACt                                                                       <  2:963631/150‑1 (MQ=255)
                                                                                  cAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGt                                                                     <  1:1212801/150‑1 (MQ=255)
                                                                                     aTGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGa                                                                  >  1:51627/1‑150 (MQ=255)
                                                                                     aTGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGa                                                                  <  1:1772848/150‑1 (MQ=255)
                                                                                        aCGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCAGATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATgg                                                               >  1:3046056/1‑150 (MQ=255)
                                                                                          gAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAATAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGgcg                                                             >  1:4030092/1‑150 (MQ=255)
                                                                                           aaGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAATAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGgcgc                                                            >  1:3301908/1‑150 (MQ=255)
                                                                                            aGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCt                                                           <  2:3726817/150‑1 (MQ=255)
                                                                                            aGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCt                                                           >  2:2957026/1‑150 (MQ=255)
                                                                                              ttCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAATAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTcc                                                         >  2:1831416/1‑150 (MQ=255)
                                                                                              ttCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTcc                                                         <  1:3926411/150‑1 (MQ=255)
                                                                                               tCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCg                                                        >  1:628571/1‑150 (MQ=255)
                                                                                                  atatTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAATAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCa                                                     >  2:1300861/1‑150 (MQ=255)
                                                                                                    atTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAg                                                   >  1:1479036/1‑150 (MQ=255)
                                                                                                      tCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCg                                                 <  1:3202943/150‑1 (MQ=255)
                                                                                                       cATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGa                                                <  2:1156731/150‑1 (MQ=255)
                                                                                                         tatTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGaca                                              >  2:821079/1‑150 (MQ=255)
                                                                                                             tAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGTATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGa                                          <  1:4264144/150‑1 (MQ=255)
                                                                                                              aaaaCATCTTATTTGATATTATTAATATATTAGACAGAACAATTCGATTTGCCTCCCCTATGTATAAGCCTTATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGAc                                         <  1:141954/150‑1 (MQ=255)
                                                                                                              aaaaCATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGAc                                         >  1:2748011/1‑150 (MQ=255)
                                                                                                                 aCATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACaag                                      >  1:3370923/1‑150 (MQ=255)
                                                                                                                       tATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACaagcaaagc                                <  2:2090338/150‑1 (MQ=255)
                                                                                                                        aTTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACaagcaaagca                               >  2:587330/1‑150 (MQ=255)
                                                                                                                          ttGAGATTATTAATATATTAGACACAACAATTCTATTTTCCTACCATATGTATAAGCCTGATCTACAGGAAAATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGAGGGCGCTCCGCCACGCGACACTGACAAGCAAAGCAtt                             <  1:1132354/150‑1 (MQ=255)
                                                                                                                              gaTTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGATAAGCAAAGCATTtctc                         >  2:1204664/1‑150 (MQ=255)
                                                                                                                               attattAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCa                        <  2:3065778/150‑1 (MQ=255)
                                                                                                                                ttattaATATATTAGACAGAATAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAg                       >  1:387261/1‑150 (MQ=255)
                                                                                                                                  attaATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGcc                     >  2:2857525/1‑150 (MQ=255)
                                                                                                                                     aaTATATTAGACAGAATAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCaaa                  >  2:3289060/1‑150 (MQ=255)
                                                                                                                                     aaTATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCaaa                  <  1:2215615/150‑1 (MQ=255)
                                                                                                                                      atatatTAGACAGAACAATTCGATTTTCCTACCCTATTTATAAGCCTGATATACAGGCATATTTAGCAAGTATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAAt                 <  1:4195117/150‑1 (MQ=255)
                                                                                                                                      atatatTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGAATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAAt                 <  1:1918121/150‑1 (MQ=255)
                                                                                                                                       tatatTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTTATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATc                <  1:1923226/150‑1 (MQ=255)
                                                                                                                                        atatTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCa               >  2:3163465/1‑150 (MQ=255)
                                                                                                                                           ttAGACATAACAATTCGATTTTCCTACCCTATTTATAAGCCTGATCTACAGGAATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAAtt            <  2:3815952/150‑1 (MQ=255)
                                                                                                                                            tAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAAttt           >  1:4511418/1‑150 (MQ=255)
                                                                                                                                            tAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAAttt           >  2:1911470/1‑150 (MQ=255)
                                                                                                                                              gACAGAATAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATttat         >  1:748527/1‑150 (MQ=255)
                                                                                                                                              gACAGAACAATTCTATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATTTTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTTTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATttat         <  1:2514871/150‑1 (MQ=255)
                                                                                                                                              gACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATttat         >  2:2229649/1‑150 (MQ=255)
                                                                                                                                              gACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATttat         >  2:2632047/1‑150 (MQ=255)
                                                                                                                                               aCAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATttatt        <  2:1432582/150‑1 (MQ=255)
                                                                                                                                                cAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTTAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATttatta       <  1:4088831/150‑1 (MQ=255)
                                                                                                                                                cAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATttatta       <  1:1997497/150‑1 (MQ=255)
                                                                                                                                                cAGAACAATTCGATTTTCCTACCCTAGTTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCATGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATttatta       <  1:1601626/150‑1 (MQ=255)
                                                                                                                                                 aGAATAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATTTATTaa      >  2:4525956/1‑150 (MQ=255)
                                                                                                                                                 aGAATAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATGTATTaa      >  2:3391902/1‑150 (MQ=255)
                                                                                                                                                 aGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATTTATTaa      >  2:2434431/1‑150 (MQ=255)
                                                                                                                                                  gAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATTTATTaaa     >  2:1698668/1‑150 (MQ=255)
                                                                                                                                                   aaCAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAACGCATTTCTCAGCCAAATCAATTTATTAAAc    <  2:4046880/150‑1 (MQ=255)
                                                                                                                                                   aaCAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATTTATTAAAc    <  2:945097/150‑1 (MQ=255)
                                                                                                                                                   aaCAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGAATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATTTATTAAAc    <  2:4225786/150‑1 (MQ=255)
                                                                                                                                                     cAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGAGGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATTTATTAAAcgc  <  2:2691268/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCCCGAAATGCAGCTCTTCCGCAACAGCAACAAAGTAACGCAGATGACGAAGTTCAATATTCATATTTAAAACATCTTATTTGAGATTATTAATATATTAGACAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTGATGGCGCTCCGGCAAGCGACACTGACAAGCAAAGCATTTCTCAGCCAAATCAATTTATTAAACGC  >  CP009273/1663744‑1664042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A