Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F78 I0 R1
|
626 |
241.3 |
10389380 |
77.7% |
8072548 |
149.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,649,456 |
C→T |
12.1% |
intergenic (‑58/+148) |
rspA ← / ← ynfA |
bifunctional D‑altronate/D‑mannonate dehydratase/UPF0060 family inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,649,456 | 0 | C | T | 12.1%
| 695.0
/ 66.5
| 248 | intergenic (‑58/+148) | rspA/ynfA | bifunctional D‑altronate/D‑mannonate dehydratase/UPF0060 family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (98/120); new base T (10/20); total (108/140) |
| Fisher's exact test for biased strand distribution p-value = 2.46e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 257 total aligned reads displayed.
GGCCCGTAATACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTGATAAAATGGATTTATGTTCCT > CP009273/1649308‑1649605
|
ggCCCGTAATACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTAcc > 2:3397115/1‑150 (MQ=255)
cccGTAATACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCAt < 2:776144/150‑1 (MQ=255)
ccGTAATACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATa > 1:436680/1‑150 (MQ=255)
ccGTAATACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATa > 1:3044486/1‑150 (MQ=255)
cGTAATACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATAc > 2:4288352/1‑150 (MQ=255)
tAATACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACaa > 1:101728/1‑150 (MQ=255)
tAATACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACaa > 1:4744703/1‑150 (MQ=255)
aaTACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAg > 1:1395236/1‑150 (MQ=255)
aaTACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAg > 2:2618918/1‑150 (MQ=255)
aTACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGt > 2:3885099/1‑150 (MQ=255)
tACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGta < 1:1062658/150‑1 (MQ=255)
tACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGta < 1:3940219/150‑1 (MQ=255)
aCCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGtat > 2:1556820/1‑150 (MQ=255)
ccGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGtata < 2:3616152/150‑1 (MQ=255)
cTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGAt < 1:3901150/150‑1 (MQ=255)
cTCAGTGGTGATTTTTAATGTGACGAAATAACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGAt > 2:4940637/1‑150 (MQ=255)
aGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑a > 2:5120313/1‑150 (MQ=255)
tggtgATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑aaa > 2:579890/1‑150 (MQ=255)
ggtgATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑aaaa > 1:1669154/1‑150 (MQ=255)
ggtgATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑aaaa > 1:3470300/1‑150 (MQ=255)
tgATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑aaaaaa < 1:1206423/150‑1 (MQ=255)
gATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAg < 2:4976994/150‑1 (MQ=255)
tttttAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACACGTATAAAGATCG‑AAAATAGcc > 2:138091/1‑150 (MQ=255)
tttttAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGcc < 1:1258192/150‑1 (MQ=255)
ttttAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCg < 1:3043426/150‑1 (MQ=255)
tttAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCCTGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCgg < 1:2631944/150‑1 (MQ=255)
tAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAg < 1:3690945/150‑1 (MQ=255)
aTGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTg < 1:647840/150‑1 (MQ=255)
tgtgACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGa < 1:4940956/150‑1 (MQ=255)
aCGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATcac < 2:3449675/150‑1 (MQ=255)
cGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATcaca < 1:5099719/150‑1 (MQ=255)
gAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACaa < 2:1352959/150‑1 (MQ=255)
aaTTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACaaaa > 2:1974117/1‑150 (MQ=255)
aTTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACaaaaa > 1:153929/1‑150 (MQ=255)
tACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACaaaaaaa < 1:3302719/150‑1 (MQ=255)
aCGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACaaaaaaaa < 2:1812365/150‑2 (MQ=255)
cGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAgg < 1:2070909/150‑1 (MQ=255)
ccccGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCg < 2:214854/150‑1 (MQ=255)
cccGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGACGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGt > 1:184142/1‑150 (MQ=255)
cGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCGAAAAAAAGCCGGAGTGATCACAAAAAAAGGCGta > 2:1592520/1‑150 (MQ=255)
gACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTatat > 2:1455507/1‑150 (MQ=255)
aGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg > 1:4694832/1‑150 (MQ=255)
aGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg > 1:4099395/1‑150 (MQ=255)
aGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTAGAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTg > 1:4099367/1‑150 (MQ=255)
ggTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTgc < 1:287284/150‑1 (MQ=255)
gTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTgcg < 1:3834201/150‑1 (MQ=255)
cAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCtgt < 1:2504030/150‑1 (MQ=255)
cAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCtgt > 2:4734088/1‑150 (MQ=255)
aaCTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAAt < 1:4010076/150‑1 (MQ=255)
tCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAACAAAGGCGTATATTTGCGCTGTGAATGGtt < 2:3066076/150‑1 (MQ=255)
cTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACaa < 2:4177369/150‑1 (MQ=255)
ttACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACaaaa > 2:4061823/1‑150 (MQ=255)
gATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCAC‑AAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGa > 1:4341966/1‑150 (MQ=255)
aTCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGa < 2:3093989/150‑1 (MQ=255)
tCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGaa > 2:4129283/1‑150 (MQ=255)
tCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGaa < 1:3325474/150‑1 (MQ=255)
gTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAAt < 2:302159/150‑1 (MQ=255)
ttCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATa < 1:3716543/150‑1 (MQ=255)
cGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATAcc < 1:1689567/150‑1 (MQ=255)
cGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATAcc > 1:3519064/1‑150 (MQ=255)
cGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATAcc < 1:4581878/150‑1 (MQ=255)
gATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCt < 2:436680/150‑1 (MQ=255)
gATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCt < 2:3740176/150‑1 (MQ=255)
gATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCt < 2:2462921/150‑1 (MQ=255)
aTTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCtt > 1:4616199/1‑150 (MQ=255)
ttGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTc < 2:3570729/150‑1 (MQ=255)
ttGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTc < 2:1710551/150‑1 (MQ=255)
gCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAg < 2:1683246/150‑1 (MQ=255)
gCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAg < 2:4276601/150‑1 (MQ=255)
tCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTg < 1:1974117/150‑1 (MQ=255)
tCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTg < 1:717839/150‑1 (MQ=255)
cTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGaca < 2:2856088/150‑1 (MQ=255)
cTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGaca > 2:3351027/1‑150 (MQ=255)
attGTCGTGTTGCATTAAATCTACGCAACTGAGATACTATCATACAAGTATAAAGATCG‑AAAAAAGCAGGAGTTATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGaca < 2:2856290/149‑1 (MQ=255)
tGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACt < 2:575687/150‑1 (MQ=255)
tCGTGATGCATGAAATCTACGCAACTGAGATACTACCATACAAGTATAAAGATCT‑AAAAAAGCCTGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTc < 1:4481241/150‑1 (MQ=255)
tGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCctc < 2:4772520/150‑1 (MQ=255)
gATGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCctct < 2:1452134/150‑1 (MQ=255)
aTGCATGAAATCTACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCtctt < 1:3610011/150‑1 (MQ=255)
aTGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCtctt < 2:2197551/150‑1 (MQ=255)
tGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCtctta < 2:3471044/150‑1 (MQ=255)
tGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCtctta < 2:1669154/150‑1 (MQ=255)
gCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCtcttat > 1:4823412/1‑150 (MQ=255)
gCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCtcttat > 2:4573636/1‑150 (MQ=255)
aTGAAATCTACGCAACTGAGCTACTCCCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCtcttatct < 2:1408894/150‑1 (MQ=255)
aTGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCtcttatct > 2:2330628/1‑150 (MQ=255)
tGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCtcttatctt < 2:5057826/150‑1 (MQ=255)
aaaTCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTcttatcttat < 2:1046509/150‑1 (MQ=255)
aTCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTg > 1:1331978/1‑150 (MQ=255)
aTCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTg > 1:2367337/1‑150 (MQ=255)
tACGCAACTGAGCTACTATCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTGATa < 1:3188549/150‑1 (MQ=255)
cAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTGATAAAAt < 1:3476175/150‑1 (MQ=255)
cAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTGATAAAAt < 2:3671163/150‑1 (MQ=255)
aGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTGATAAAATGGAttt < 1:2172941/150‑1 (MQ=255)
ctactaTTATAAAAGTATAAATATCG‑AAAATAGCCGGAGTGATAACAAAAAAATGAGTATATTTGCGCTTTGAATGGTTGACAAAAGATTAAATAGAATACATTTTGTCATCTGACACTTCCTCTTATCTTATTGATAAAATGGATTTAt < 2:4696588/150‑1 (MQ=255)
ctactaCCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTGATAAAATGGATTTAt > 2:348135/1‑150 (MQ=255)
ctactaCCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTGATAAAATGGATTTAt < 2:1164730/150‑1 (MQ=255)
tactacCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTGATAAAATGGATTTATg < 1:1556820/150‑1 (MQ=255)
actatCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTGATAAAATGGATTTATGt < 2:3351321/150‑1 (MQ=255)
ccATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTGATAAAATGGATTTATGTTCCt < 1:3783540/150‑1 (MQ=255)
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GGCCCGTAATACCGTCCTCAGTGGTGATTTTTAATGTGACGAAATTACGCCCCGGACAGGTAACAAAAACTTCAGCCTTTACGATCTTCATGTTCGATTCCTTGCATCGCTTGTCGTGATGCATGAAATCTACGCAACTGAGCTACTACCATACAAGTATAAAGATCG‑AAAAAAGCCGGAGTGATCACAAAAAAAGGCGTATATTTGCGCTGTGAATGGTTGACAAAAGATGAAATAGAATACCTTTTGTCAGCTGACACTTCCTCTTATCTTATTGATAAAATGGATTTATGTTCCT > CP009273/1649308‑1649605
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
