Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F368 I0 R1
|
1472 |
214.4 |
7116750 |
95.9% |
6824963 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,859,132 |
A→C |
92.7% |
A254A (GCT→GCG) |
yeaE ← |
aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,859,132 | 0 | A | C | 92.7%
| 544.4
/ 16.0
| 150 | A254A (GCT→GCG) | yeaE | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (6/5); new base C (67/72); total (73/77) |
| Fisher's exact test for biased strand distribution p-value = 7.61e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01 |
Only 100 of 152 total aligned reads displayed.
CGTTAATTTACGTTAATGTTGTGTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAA > CP009273/1858986‑1859275
|
tAATTTACGTTAATGTTGTGTGGCGGGTGCAATTCATCCGGCCCACAACATCACACCAAATCCAGCGCAGTTTTTGCTTTTGGTGCCGGATATGCCGTATCCAGCATAGCTAATTCCGCTGAAGAAAGGTCGACCTCAAGCAccgccg > 1:2236498/1‑148 (MQ=255)
aTTTCCGTTATGTTTGTGTGCCGGGTGAAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCa < 1:1936182/148‑1 (MQ=255)
tttcgtttATTGTTGTGTGCGGGGTGCAATGCATCCGCCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCAt < 1:1598000/142‑1 (MQ=255)
aCGTTAATGTTGTGTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCAtttt < 2:2904624/148‑1 (MQ=255)
gttgtGTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACa < 2:1874142/148‑1 (MQ=255)
gttgtGTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACa < 2:1874139/148‑1 (MQ=255)
gttgtGTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCGTTTGGTGCCGGATATGCCGTATCCAGCATAGCTAATTCCGCGGACGAAAGTTCGACCTCAAGCACCGCCGCAATTTGTTGGACa > 2:840653/1‑148 (MQ=255)
ttgtGTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACAt < 2:43478/148‑1 (MQ=255)
ttgtGGGCCGGGTGAAAGCCATCCCGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACAt < 1:824941/148‑1 (MQ=255)
gCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCaa > 1:1616742/1‑148 (MQ=255)
ggTGCAATGCATCCGACACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGt > 2:2834435/1‑148 (MQ=255)
gCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGc > 1:67517/1‑148 (MQ=255)
gCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGc > 1:2271988/1‑148 (MQ=255)
tGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCt > 1:571467/1‑148 (MQ=255)
gCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCtt > 1:1679811/1‑148 (MQ=255)
tCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGcggttg > 1:3367401/1‑143 (MQ=255)
tCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTg > 2:195040/1‑148 (MQ=255)
ccGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGACAGTTCGACCTCAAGCACCGCCGCAATTTGTTTGACATGGGCAATCGTGGACGCgttttg > 1:3285101/1‑146 (MQ=255)
cGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGa < 2:17790/148‑1 (MQ=255)
ccacacaACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAAt < 1:2751240/147‑1 (MQ=255)
cacacaACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCACTCGTGGCCGCTTTTGGAATc > 2:1139151/1‑148 (MQ=255)
cacaACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGc > 2:2816647/1‑148 (MQ=255)
acaacaTCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGcc > 1:3445349/1‑148 (MQ=255)
aacaTCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCAt > 1:2935016/1‑148 (MQ=255)
cacaCCATCTCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCacac < 2:2057716/148‑1 (MQ=255)
cacaCCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCacac > 1:1734656/1‑148 (MQ=255)
acacCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACAcc < 1:2373522/148‑1 (MQ=255)
cacCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACAccc < 2:2551966/148‑1 (MQ=255)
cacCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACAccc < 2:1182349/148‑1 (MQ=255)
cacCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACAccc > 2:3355769/1‑148 (MQ=255)
acCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCt < 2:3021422/148‑1 (MQ=255)
ccATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCtg < 2:2415376/148‑1 (MQ=255)
cATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCtga < 1:3195862/148‑1 (MQ=255)
atatCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCagat > 1:2830071/1‑148 (MQ=255)
tatCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCtgatg > 1:3200808/1‑148 (MQ=255)
tCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGAc > 2:2494241/1‑148 (MQ=255)
tCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGATCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGAc > 2:774123/1‑148 (MQ=255)
ccAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCAACACACCCAGATGACt > 1:3322008/1‑148 (MQ=255)
gcgcAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTTGAATCGCCATCACACCCAGATGACTGAt > 1:1925695/1‑148 (MQ=255)
gcgcAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGAt > 2:3339551/1‑148 (MQ=255)
gcgcAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCAGAAGAAAGTTCGACCTCAAGCACCGCCGCAATTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCAGATGACTGAt > 1:3190752/1‑148 (MQ=255)
cgcAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATc > 2:856049/1‑148 (MQ=255)
gTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCAccc < 2:1003679/148‑1 (MQ=255)
tttttCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCa > 1:937102/1‑148 (MQ=255)
tttttCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCa > 1:1671876/1‑148 (MQ=255)
tttttCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCGTTTGGAATCGCCATCACACCCTGATTACTGATCACCCa > 1:936854/1‑148 (MQ=255)
tttCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCAGATGACAGATCACCCACg > 1:1208440/1‑148 (MQ=255)
ttCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGc < 1:1754949/148‑1 (MQ=255)
ttCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGc > 2:2297436/1‑148 (MQ=255)
ttCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGc < 1:2245243/148‑1 (MQ=255)
tCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGcc > 2:1291375/1‑148 (MQ=255)
ccatttGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCca < 2:2540157/145‑1 (MQ=255)
ccTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTTTTTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCca < 2:598068/148‑1 (MQ=255)
ccTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCca < 1:632166/148‑1 (MQ=255)
cTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCcaa > 1:2642370/1‑148 (MQ=255)
ttttGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCcaac > 2:50277/1‑148 (MQ=255)
ttttGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCcaac > 1:2152234/1‑148 (MQ=255)
ttttGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCcaac > 1:2152081/1‑148 (MQ=255)
ttGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCcaacaa < 1:2975578/148‑1 (MQ=255)
ttGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCcaacaa < 2:2770730/148‑1 (MQ=255)
tGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACt < 1:3140984/148‑1 (MQ=255)
ccGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCCCCATCACACCCTGATGACTGATCACCCACGCCAACCATACTtg > 2:1928702/1‑148 (MQ=255)
gATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGc < 1:2339644/148‑1 (MQ=255)
tatGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCcg < 1:3161398/148‑1 (MQ=255)
tatGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCcg > 1:1366477/1‑148 (MQ=255)
atGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCcgc > 2:2464491/1‑148 (MQ=255)
gCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCgcgc > 1:3105630/1‑148 (MQ=255)
tATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGat < 1:2291575/148‑1 (MQ=255)
tATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGat < 2:1069742/148‑1 (MQ=255)
aTCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGata > 1:2606874/1‑148 (MQ=255)
tCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGatat < 1:1101749/148‑1 (MQ=255)
tCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGatat < 1:2876366/148‑1 (MQ=255)
tCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGatat > 2:3275614/1‑148 (MQ=255)
ccAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATAtt > 1:2539701/1‑148 (MQ=255)
cAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATtg < 1:1464684/148‑1 (MQ=255)
cATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGa > 1:774008/1‑148 (MQ=255)
tAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGc < 2:2881171/148‑1 (MQ=255)
gCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCAt < 1:3137275/148‑1 (MQ=255)
cTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCAtg > 2:2975583/1‑148 (MQ=255)
ttCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCa > 2:2885435/1‑148 (MQ=255)
ttCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCa < 2:573738/148‑1 (MQ=255)
cGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAAtt < 1:2064050/148‑1 (MQ=255)
cGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAAtt < 1:2064049/148‑1 (MQ=255)
gCTGAAGAAAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAAttt < 2:60946/148‑1 (MQ=255)
tGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCg < 1:2760684/148‑1 (MQ=255)
gaagaaAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGt < 2:1734656/148‑1 (MQ=255)
agaaAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTg < 2:2761128/148‑1 (MQ=255)
agaaAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTg < 2:1616742/148‑1 (MQ=255)
gaaAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGa < 1:1854536/148‑1 (MQ=255)
aGTTCGACCTCAAGCACCGCCGCATTTTGTTGGGCATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTa < 1:3307095/148‑1 (MQ=255)
aGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTa > 1:2854139/1‑148 (MQ=255)
aCCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGt < 1:856049/148‑1 (MQ=255)
aCCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGt < 2:1603351/148‑1 (MQ=255)
tCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCACCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGtttt > 2:3354810/1‑148 (MQ=255)
tCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGtttt < 2:1999874/148‑1 (MQ=255)
gCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTaa < 1:1736626/148‑1 (MQ=255)
gCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTaa < 2:2271988/148‑1 (MQ=255)
gCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTaa < 2:67517/148‑1 (MQ=255)
gCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTaa > 2:2742264/1‑148 (MQ=255)
gCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTaa > 2:1396522/1‑148 (MQ=255)
|
CGTTAATTTACGTTAATGTTGTGTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCTTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAA > CP009273/1858986‑1859275
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAACGTTAATTTACGTTAATGTTGTGTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTC > CP009273/1858983‑1859280
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AAACGTTAATTTACGTTAATGTTGTGTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCCGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATATCTAATTACGCTGAAGAAAGTTCGACCTCAAGCACC > SRR19973067.1512098/1‑150 (MQ=60)
AAACGTTAATTTACGTTAATGTTGTGTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCCGCGCAGTTTTTCCGTTTGGTGCCGGGTATGCCGTATCCAGCATAGCTAATTCCGCGGAAGAAAGTTAGACCACAAGCACC > SRR19973067.2014521/1‑150 (MQ=60)
GTTAATTTACGTTAATGTTGTGTGGCGGGTGCAATTCATCCGGCCCACAACATCACACCAAATCCAGCGCAGTTTTTGCTTTTGGTGCCGGATATGCCGTATCCAGCATAGCTAATTCCGCTGAAGAAAGGTCGACCTCAAGCACCGCCG > SRR19973067.2251374/1‑150 (MQ=60)
atttccgttatgtTTGTGTGCCGGGTGAAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATT < SRR19973067.1949388/137‑1 (MQ=60)
TTTTAGGTTATTGTTGTGTGCGGGGTGCAAGGCAGCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATT < SRR19973067.2242547/150‑1 (MQ=60)
tttcgtttatTGTTGTGTGCGGGGTGCAATGCATCCGCCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTT < SRR19973067.1608970/140‑1 (MQ=60)
ATTTTGTGTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACA > SRR19973067.2464924/1‑150 (MQ=60)
ttgtgggcggggtgcattgaacccgcccCACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGG < SRR19973067.976962/122‑1 (MQ=60)
TTGTGTGCGGGGTGCATTCCACCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGG < SRR19973067.1767780/150‑1 (MQ=60)
TTGTGGGCCGGGTGAAAGCCATCCCGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGG < SRR19973067.830575/150‑1 (MQ=60)
GTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAA > SRR19973067.1627840/1‑150 (MQ=60)
GTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGC > SRR19973067.2287033/1‑150 (MQ=60)
GTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGC > SRR19973067.68314/1‑150 (MQ=60)
AATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑T > SRR19973067.575165/1‑150 (MQ=60)
ATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TT > SRR19973067.1691387/1‑150 (MQ=60)
ATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TT > SRR19973067.1693837/1‑150 (MQ=60)
GCACCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTT < SRR19973067.3174494/150‑1 (MQ=60)
GCAACCGCCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTT < SRR19973067.3174122/150‑1 (MQ=60)
CATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGCggttg > SRR19973067.3388779/1‑145 (MQ=60)
ATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGACAGTTCGACCTCAAGCACCGCCGCAATTTGTTTGACATGGGCAATCGTGGACGCGTTTTG > SRR19973067.3305721/1‑150 (MQ=60)
CCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCG < SRR19973067.2769018/150‑1 (MQ=60)
ACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCC > SRR19973067.3467274/1‑150 (MQ=60)
ACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCAT > SRR19973067.2953640/1‑150 (MQ=60)
ACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑GTTTGGAATCGCCATCAC > SRR19973067.2013366/1‑150 (MQ=60)
ATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACAC > SRR19973067.1746529/1‑150 (MQ=60)
TCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACC > SRR19973067.1641875/1‑150 (MQ=60)
TCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACC > SRR19973067.3413560/1‑150 (MQ=60)
ACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCT < SRR19973067.2388957/150‑1 (MQ=60)
CCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCAGAT > SRR19973067.2848262/1‑150 (MQ=60)
CATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATG > SRR19973067.3220996/1‑150 (MQ=60)
CATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATG < SRR19973067.3216030/150‑1 (MQ=60)
ATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCAACACACCCAGATGACT > SRR19973067.3343022/1‑150 (MQ=60)
CAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTTGAATCGCCATCACACCCAGATGACTGAT > SRR19973067.1938834/1‑150 (MQ=60)
CAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCAGAAGAAAGTTCGACCTCAAGCACCGCCGCAATTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCAGATGACTGAT > SRR19973067.3210907/1‑150 (MQ=60)
AGCGCAGTTTTTCCGTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCAGATGACTGATC > SRR19973067.3277789/1‑150 (MQ=60)
AGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCA > SRR19973067.943469/1‑150 (MQ=60)
AGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCA > SRR19973067.1683406/1‑150 (MQ=60)
AGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑GTTTGGAATCGCCATCACACCCTGATTACTGATCACCCA > SRR19973067.943219/1‑150 (MQ=60)
TTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCAGATGACAGATCACCCACG > SRR19973067.1216383/1‑150 (MQ=60)
TTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCA < SRR19973067.2260158/150‑1 (MQ=60)
TTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCA < SRR19973067.1766903/150‑1 (MQ=60)
TCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAA > SRR19973067.2659439/1‑150 (MQ=60)
CCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAAC > SRR19973067.2166622/1‑150 (MQ=60)
CCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAAC > SRR19973067.2166469/1‑150 (MQ=60)
CCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAAC < SRR19973067.636399/150‑1 (MQ=60)
CTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCAGATGACTGATAACCCACGCCAACA > SRR19973067.694878/1‑150 (MQ=60)
TTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATA < SRR19973067.2994339/150‑1 (MQ=60)
TGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTG < SRR19973067.3160925/150‑1 (MQ=60)
GATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCG > SRR19973067.1375808/1‑150 (MQ=60)
GATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCG < SRR19973067.2354955/150‑1 (MQ=60)
GATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCG > SRR19973067.1375758/1‑150 (MQ=60)
TATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCG < SRR19973067.3181425/150‑1 (MQ=60)
ATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGC > SRR19973067.3125385/1‑150 (MQ=60)
TGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCT < SRR19973067.2824226/150‑1 (MQ=60)
GCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTG > SRR19973067.2687148/1‑150 (MQ=60)
TTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATA < SRR19973067.899470/150‑1 (MQ=60)
TTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATA > SRR19973067.2623811/1‑150 (MQ=60)
TATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATAT < SRR19973067.2306751/150‑1 (MQ=60)
TATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATAT < SRR19973067.2306714/150‑1 (MQ=60)
ATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATT > SRR19973067.2556327/1‑150 (MQ=60)
ATCCACCAGAGCTAAGTCCGCTGAAGACAGTTCGACCTCCAGCACCGCCGCCTTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATT < SRR19973067.628272/150‑1 (MQ=60)
TCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTG < SRR19973067.1109243/150‑1 (MQ=60)
TCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTG < SRR19973067.2894769/150‑1 (MQ=60)
CAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTG < SRR19973067.1474462/150‑1 (MQ=60)
AGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGA > SRR19973067.2573631/1‑150 (MQ=60)
AGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGA > SRR19973067.779376/1‑150 (MQ=60)
GCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGT < SRR19973067.3157197/150‑1 (MQ=60)
GCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGT < SRR19973067.3157046/150‑1 (MQ=60)
ATTCCGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAA < SRR19973067.1873415/150‑1 (MQ=60)
CGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTC < SRR19973067.2077782/150‑1 (MQ=60)
CGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTC < SRR19973067.2077783/150‑1 (MQ=60)
CGCTGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTC < SRR19973067.2077784/150‑1 (MQ=60)
TGAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTT < SRR19973067.2778525/150‑1 (MQ=60)
GAAGAAATTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCAAGCCTACTATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTG < SRR19973067.787905/150‑1 (MQ=60)
GAAGAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTG > SRR19973067.2263734/1‑150 (MQ=60)
GAAAGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACT < SRR19973067.1867175/150‑1 (MQ=60)
AAAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTA > SRR19973067.2872973/1‑150 (MQ=60)
AAAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTA > SRR19973067.2872448/1‑150 (MQ=60)
AAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCACCATCACACCCAGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTAC > SRR19973067.1487799/1‑150 (MQ=60)
AGTTCGACCTCAAGCACCGCCGCATTTTGTTGGGCATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACC < SRR19973067.3327961/150‑1 (MQ=60)
AGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACC < SRR19973067.3331267/150‑1 (MQ=60)
AGTTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑GTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACC > SRR19973067.3215485/1‑150 (MQ=60)
TTCGACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGC > SRR19973067.296732/1‑150 (MQ=60)
ACCTCAAGCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTT < SRR19973067.861815/150‑1 (MQ=60)
GCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACA < SRR19973067.1748505/150‑1 (MQ=60)
GCACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACA < SRR19973067.1749068/150‑1 (MQ=60)
ACCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑GTTTGGAATCGCCAACACACCCAGATGAAGGATCACCCACGCCAAAAATACGTGGGCCGCGCGGATATTGTGAGCATGTGCAAATTAGTTGAATACCCCGTTTTTTAAAAGT > SRR19973067.2736571/1‑150 (MQ=60)
CCGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTC < SRR19973067.2834787/150‑1 (MQ=60)
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AAACGTTAATTTACGTTAATGTTGTGTGCCGGGTGCAATGCATCCGGCACACAACATCACACCATATCCAGCGCAGTTTTTCCTTTTGGTGCCGGATATGCCTTATCCAGCATAGCTAATTCCGCTGAAGAAAGTTCGACCTCAAGCACAGCCGCATTTTGTTGGACATGGGCAATCGTGGCCGC‑TTTTGGAATCGCCATCACACCCTGATGACTGATCACCCACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTC > CP009273/1858983‑1859280
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
