Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F142 I0 R1
|
859 |
274.6 |
8723680 |
96.4% |
8409627 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
465,341 |
A→C |
14.9% |
I339L (ATT→CTT) |
mdlA → |
putative multidrug transporter subunit of ABC superfamily, ATP‑binding component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 465,341 | 0 | A | C | 14.9%
| 710.2
/ 127.8
| 284 | I339L (ATT→CTT) | mdlA | putative multidrug transporter subunit of ABC superfamily, ATP‑binding component |
| Reads supporting (aligned to +/- strand): ref base A (129/112); new base C (24/18); total (154/130) |
| Fisher's exact test for biased strand distribution p-value = 7.38e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 |
Only 100 of 292 total aligned reads displayed.
GCCAATGCTGGCGCTGGCATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAGCGTCATTTCGACG > CP009273/465193‑465488
|
gCCACTGCTGGCGCTGGCATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAatat < 2:672495/150‑1 (MQ=255)
gCCAATGCTGGCGCTGGCATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAatat < 2:1051775/150‑1 (MQ=255)
cAATGCTGGCGCTGGCATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTc < 2:4323098/150‑1 (MQ=255)
cAATGCTGGCGCTGGCATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTc > 1:3902123/1‑150 (MQ=255)
cAATGCTGGCGCTGGCATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTc < 1:236559/150‑1 (MQ=255)
aTGCTGGCGCTGGCATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCAc > 2:2212011/1‑150 (MQ=255)
tGCTGGCGCTGGCATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCAcc < 1:780589/150‑1 (MQ=255)
tGCTGGCGCTGGCATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCAcc < 2:165335/150‑1 (MQ=255)
gctggcgctggcATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCa < 2:916335/150‑1 (MQ=255)
ctggcgctggcATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAg < 2:960361/150‑1 (MQ=255)
tggcgctttcATGGATGTTTAACATTGTGGAACGTGGTAGTGATTCGTACAGCCGTATTCTCGCGATGATGGATGAAGCGCCGTTGTTGAACGATGGTAGCGAACCCGTGCCGTAATTTAGTGTCTAACTGGATGTAAATATTCACCAGt > 2:623419/1‑150 (MQ=255)
tggcgctggcATGGATGTTTAACTTTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGt < 1:1126276/150‑1 (MQ=255)
ggcgctggcATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGtt < 2:176916/150‑1 (MQ=255)
gcgctggcATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTc < 1:4264725/150‑1 (MQ=255)
ctggcATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACg < 2:2783147/150‑1 (MQ=255)
gcATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTAt > 2:4292024/1‑150 (MQ=255)
cATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATc > 2:1566687/1‑150 (MQ=255)
aTGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATcc > 1:3999092/1‑150 (MQ=255)
tGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCg > 1:533692/1‑150 (MQ=255)
tGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGAGGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCg < 2:2713129/150‑1 (MQ=255)
aCATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGAcc > 2:3213566/1‑150 (MQ=255)
agtgtgGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGAGGCGGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCAt < 1:862414/148‑1 (MQ=255)
aTTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCAt > 2:3823872/1‑150 (MQ=255)
aTTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCAt > 2:3824763/1‑150 (MQ=255)
gtgtgGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATc < 1:2701714/149‑1 (MQ=255)
tgtgGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATcc > 1:4043237/1‑150 (MQ=255)
tgtgGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATcc > 1:2444127/1‑150 (MQ=255)
gtgGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCt < 2:3974500/150‑1 (MQ=255)
tgGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTg > 1:2319442/1‑150 (MQ=255)
ggAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTgc < 1:596/150‑1 (MQ=255)
aaCGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTgcgc > 1:3653817/1‑150 (MQ=255)
cGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTg > 2:1268708/1‑150 (MQ=255)
cGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTg < 2:3604366/150‑1 (MQ=255)
gTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCAgg > 2:1736138/1‑150 (MQ=255)
gTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTgg > 2:3375453/1‑150 (MQ=255)
tGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGa < 1:677366/150‑1 (MQ=255)
gTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGaaa > 1:2507819/1‑150 (MQ=255)
gaGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGaaca > 1:2743692/2‑148 (MQ=255)
aGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAAc > 2:3447423/1‑150 (MQ=255)
gTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACg < 1:87859/150‑1 (MQ=255)
ctgcGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCa > 2:132398/1‑150 (MQ=255)
ctgcGTACAGCCGTATTCGCGCGAGGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCa < 1:785647/150‑1 (MQ=255)
cGTACAGCCGTATTCGCGCGAAGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGCCTGACCATCCTGCGCTGGAACACGGCAAtt > 1:1340623/1‑150 (MQ=255)
gTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAAttt < 1:1204857/150‑1 (MQ=255)
tACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTc < 1:4152480/150‑1 (MQ=255)
tACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTc < 1:3789589/150‑1 (MQ=255)
tACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTc < 1:715426/150‑1 (MQ=255)
tACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTACACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATATc > 1:2798426/1‑150 (MQ=255)
aCAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCg > 2:2336842/1‑150 (MQ=255)
aGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGcc > 1:1671454/1‑150 (MQ=255)
ccGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCt > 1:1006973/1‑150 (MQ=255)
cGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTg < 1:190921/150‑1 (MQ=255)
tATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGaa < 1:2125028/150‑1 (MQ=255)
aTTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGaaa > 1:3857462/1‑150 (MQ=255)
tCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAAcc > 2:514051/1‑150 (MQ=255)
cgcgcgATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGGGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAAccc < 2:2018603/150‑1 (MQ=255)
gcgcgATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCg < 1:4188107/150‑1 (MQ=255)
cgcgATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCgg < 1:3160366/150‑1 (MQ=255)
gcgATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGt < 1:2820607/150‑1 (MQ=255)
tGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGc > 1:557745/1‑150 (MQ=255)
ggAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTggg > 2:717227/1‑150 (MQ=255)
aGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTAt < 1:1598681/150‑1 (MQ=255)
gcCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTg > 2:78280/1‑150 (MQ=255)
ccGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGc > 2:3481275/1‑150 (MQ=255)
tggtgAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGc > 1:1224923/1‑150 (MQ=255)
aaCGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACt > 1:1716683/1‑150 (MQ=255)
aCGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTg < 2:3687945/150‑1 (MQ=255)
aCGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTg < 2:2902807/150‑1 (MQ=255)
aTGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGtt < 2:3881399/150‑1 (MQ=255)
aTGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGtt < 1:2321468/150‑1 (MQ=255)
tGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTc < 2:3292527/150‑1 (MQ=255)
ggTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTcc < 2:299968/150‑1 (MQ=255)
ggTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTcc < 2:2519700/150‑1 (MQ=255)
ggTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTcc > 2:4215128/1‑150 (MQ=255)
gTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCg < 2:1834224/150‑1 (MQ=255)
aGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGc < 1:1463730/150‑1 (MQ=255)
aGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGc > 2:4108750/1‑150 (MQ=255)
aaCCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCaaaa > 1:343503/1‑150 (MQ=255)
aaCCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCaaaa > 2:540742/1‑150 (MQ=255)
cGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTAc < 2:3976050/150‑1 (MQ=255)
tGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTAccc < 1:2796366/150‑1 (MQ=255)
ccGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCtg < 2:2986026/150‑1 (MQ=255)
aGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTc > 2:2877849/1‑150 (MQ=255)
gTGGCGAACTGGATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCa > 1:256057/1‑150 (MQ=255)
gTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCa > 1:1858591/1‑150 (MQ=255)
tGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCAt < 1:1079504/150‑1 (MQ=255)
ggCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCAtt > 1:1788793/1‑150 (MQ=255)
gAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAg > 1:3245710/1‑150 (MQ=255)
gAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAg < 1:19496/150‑1 (MQ=255)
gAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAg > 1:2064257/1‑150 (MQ=255)
gAACTGGATGTAAATATTCACAAGTACACGAATCCGCAGACTGACCATCATGCGCTGGAAAACCTCAATTTCGCCCTGAAACCCGGTCAGATGATGTGTAACTGCGGGCCGACTGGTTCCGCCAAAAGTACCCTGTTGTCGCTCATTCAg > 1:2912911/1‑150 (MQ=255)
aaCTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAGc > 1:2260924/1‑150 (MQ=255)
aaCTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCACTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAGc > 1:3338527/1‑150 (MQ=255)
ggATGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAGCGTCa < 2:110037/150‑1 (MQ=255)
tGTAAATCTTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAGCGTCAttt > 2:809618/1‑150 (MQ=255)
gTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAGCGTCATTTc > 2:1454575/1‑150 (MQ=255)
gTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAGCGTCATGTc > 1:3573662/1‑150 (MQ=255)
aaTATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAGCGTCATTTCGAc < 1:3471664/150‑1 (MQ=255)
atatTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAGCGTCATTTCGACg < 2:4275228/150‑1 (MQ=255)
atatTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAGCGTCATTTCGACg < 2:1026143/150‑1 (MQ=255)
|
GCCAATGCTGGCGCTGGCATGGATGTTTAACATTGTGGAACGTGGTAGTGCTGCGTACAGCCGTATTCGCGCGATGCTGGCGGAAGCGCCGGTGGTGAACGATGGTAGCGAACCCGTGCCGGAAGGGCGTGGCGAACTGGATGTAAATATTCACCAGTTCACGTATCCGCAGACTGACCATCCTGCGCTGGAAAACGTCAATTTCGCCCTGAAACCCGGTCAGATGCTGGGTATCTGCGGGCCGACTGGTTCCGGCAAAAGTACCCTGTTGTCGCTCATTCAGCGTCATTTCGACG > CP009273/465193‑465488
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
