Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F527 I0 R1
|
1651 |
322.4 |
10661268 |
95.2% |
10149527 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,842,276 |
T→A |
29.0% |
intergenic (‑11/+106) |
selD ← / ← ydjA |
selenophosphate synthase/putative oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,842,276 | 0 | T | A | 29.0%
| 547.1
/ 293.1
| 348 | intergenic (‑11/+106) | selD/ydjA | selenophosphate synthase/putative oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base T (108/139); new base A (43/58); total (151/197) |
| Fisher's exact test for biased strand distribution p-value = 9.05e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 351 total aligned reads displayed.
CATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACAAACGGCGTCGGGTCCGGGACGTTAATCG > CP009273/1842127‑1842425
|
cATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCt > 1:4354019/1‑150 (MQ=255)
ttACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGt < 1:3233012/150‑1 (MQ=255)
tACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTc < 1:3591810/150‑1 (MQ=255)
ccACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAAt < 1:918874/150‑1 (MQ=255)
cacaAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATg > 1:1004614/1‑150 (MQ=255)
cacaAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATg > 2:2729844/1‑150 (MQ=255)
acaAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGc > 2:1378333/1‑150 (MQ=255)
acaAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGc < 2:849851/150‑1 (MQ=255)
caAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCa > 1:4650767/1‑150 (MQ=255)
aaGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCaa > 2:1761198/1‑150 (MQ=255)
cAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATATCCTGTCAATGCAATcc < 2:1946473/150‑1 (MQ=255)
aaTTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCgg > 2:1575901/1‑150 (MQ=255)
aaTTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCgg > 1:5217473/1‑150 (MQ=255)
aTTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCggg < 1:748801/150‑1 (MQ=255)
aTTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCggg > 2:1365715/1‑150 (MQ=255)
aTTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCggg > 2:2269859/1‑150 (MQ=255)
ggATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATg < 2:4152755/150‑1 (MQ=255)
gATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATgg < 1:4888340/150‑1 (MQ=255)
aacaaACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAAc > 2:428269/1‑150 (MQ=255)
aaaCTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCt < 2:627835/150‑1 (MQ=255)
aaaCTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCt < 2:5136264/150‑1 (MQ=255)
aaCTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTAGGGGAAATTTTACATCCGCAACCAGCTCCGTGTCTGTATTGGGTCAAACGAATCGAGTACTCGCTCATCGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTc > 2:5244633/1‑150 (MQ=255)
aCTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCa < 2:1807459/150‑1 (MQ=255)
cGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTcc > 2:4607868/1‑150 (MQ=255)
gCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGAGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCg < 2:3626904/150‑1 (MQ=255)
ccTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGt > 1:5054539/1‑150 (MQ=255)
tGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGa < 1:3814703/150‑1 (MQ=255)
cTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAg > 2:1182907/1‑150 (MQ=255)
cTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAg > 2:3760983/1‑150 (MQ=255)
tCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGt > 2:2495955/1‑150 (MQ=255)
tCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGt < 1:3103357/150‑1 (MQ=255)
tCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGt < 1:3677509/150‑1 (MQ=255)
cACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTg < 2:3703508/150‑1 (MQ=255)
aCTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGa > 1:1462682/1‑150 (MQ=255)
aCTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGa > 2:1979285/1‑150 (MQ=255)
cTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGAt > 2:4416507/1‑150 (MQ=255)
tATGCAGGATGGTTTCCAACACTTTTGTGGAAATTTTACAGCCGCAACCAGCTCCGTTGCTGTATTGGTTCAAACGAATCGAGTTCTCTCTCATGTACATCTCCAGTCAATGAAATCAGGGTATGTTAAACCTCATTCCGTGAAGTGATa > 2:4087102/1‑150 (MQ=255)
tATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATa > 1:526426/1‑150 (MQ=255)
tGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAg < 1:993467/150‑1 (MQ=255)
aGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTga < 1:1040902/150‑1 (MQ=255)
aTGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGagag > 1:780261/1‑150 (MQ=255)
ttCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCt > 2:4205412/1‑150 (MQ=255)
ttCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCt < 1:1551502/150‑1 (MQ=255)
tCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTg < 1:686567/150‑1 (MQ=255)
ccAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGa > 1:550382/1‑150 (MQ=255)
ccAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGa > 2:257669/1‑150 (MQ=255)
aaCACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAAt > 2:2538748/1‑150 (MQ=255)
acacTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAAtt > 2:4329668/1‑150 (MQ=255)
cacGTTTGGGGAACTTTTACAGCCGCACCCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCGCATGGACATCTCCAGTCTCTGCACTCCGGGTCGGGGACCCCTCATTCCGGGAAGTGAGACGGGAGAGTGTCGGAGTTc > 2:2933875/1‑150 (MQ=255)
acTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTcc > 1:4414091/1‑150 (MQ=255)
tttGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTgc < 1:2183742/150‑1 (MQ=255)
tttGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTgc < 1:1788827/150‑1 (MQ=255)
tGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTgcgc > 2:2653299/1‑150 (MQ=255)
gAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCttt < 1:3454571/150‑1 (MQ=255)
aaaTTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTg > 2:3940589/1‑150 (MQ=255)
aaaTTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTg < 2:4995217/150‑1 (MQ=255)
aaaTTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTg < 1:518435/150‑1 (MQ=255)
aaaTTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTg > 1:2672308/1‑150 (MQ=255)
tttACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTca > 1:1903168/1‑150 (MQ=255)
tACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTcaca > 1:1147027/1‑150 (MQ=255)
cAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAAt < 1:3343851/150‑1 (MQ=255)
cAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAAt < 2:3432094/150‑1 (MQ=255)
aGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATc > 1:2419150/1‑150 (MQ=255)
gCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATcc < 2:1900269/150‑1 (MQ=255)
gCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATcc < 1:3751001/150‑1 (MQ=255)
cAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGAc > 1:2602549/1‑150 (MQ=255)
ccAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGt > 1:1657614/1‑150 (MQ=255)
ccAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTATGAATTCCTGCGCCTTTGCTCACAATCCAGACAGt > 2:2336677/1‑150 (MQ=255)
gCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTc < 2:4926414/150‑1 (MQ=255)
gCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTc < 2:1243373/150‑1 (MQ=255)
tCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTcgc > 1:3617271/1‑150 (MQ=255)
tCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTcgc < 1:2243455/150‑1 (MQ=255)
ggCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACaa > 2:3301238/1‑150 (MQ=255)
gCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAAt < 1:459157/150‑1 (MQ=255)
cTGTATTGGGTCAAACGAATCGAGTTATCGCTGATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAAtt < 1:4984891/150‑1 (MQ=255)
gTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTAt > 1:1221000/1‑150 (MQ=255)
tATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATc < 1:4157460/150‑1 (MQ=255)
tATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATc > 1:479943/1‑150 (MQ=255)
ttGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCAGTGAAGTGAGAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAg > 2:2390644/1‑150 (MQ=255)
gggTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGaa < 1:1720625/150‑1 (MQ=255)
ggTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGaaa < 2:3123789/150‑1 (MQ=255)
gTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAAt < 1:3266978/150‑1 (MQ=255)
aaCGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGt < 1:2793811/150‑1 (MQ=255)
aaCGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGt < 2:1121878/150‑1 (MQ=255)
aCGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCATTCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGtt < 2:1272696/150‑1 (MQ=255)
cGAATCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTa > 1:1246702/1‑150 (MQ=255)
aaTCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACa > 2:2121264/1‑150 (MQ=255)
aTCGAGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACaa > 1:2889434/1‑150 (MQ=255)
cGAGTTCTCGCTCATGGACATATCCTGTCAATGAAATCCGGGTATGGTTACCCTCATTCCGTGTAGTGATAAGTGAGAGGGTCTGAATTCCTGCGCCTTTGATCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACAAAc < 2:3412401/150‑1 (MQ=255)
gAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACAAACg > 1:2530188/1‑150 (MQ=255)
gAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACAAACg < 1:3966684/150‑1 (MQ=255)
aGTTCTCGCTCATGGACATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACAAACgg < 1:3933042/150‑1 (MQ=255)
gTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACAAACGGc < 2:4650767/150‑1 (MQ=255)
gTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACAAACGGc > 1:196439/1‑150 (MQ=255)
tcGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACAAACGGCGTCg > 1:2021768/1‑150 (MQ=255)
cGCTCATGGAAATCTCCTGTCTATGCAATCCGGGTTTGGTAACCATCATTCCGTGAAGTGATAAGTGAGAGTGTATGAATTCCTGCGCCATTGCTCAAAATCCAGTCAGTTTCGCTACAATTATCAGAAATAATTTACAACCGGAGTCgg < 2:74941/150‑1 (MQ=255)
ggACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACAAACGGCGTCGGGTCCggg < 1:4694464/150‑1 (MQ=255)
aCATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACAAACGGCGTCGGGTCCGGGAc < 1:2395927/150‑1 (MQ=255)
aCATCTCCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACAAACGGCGTCGGGTCCGGGAc > 1:2722851/1‑150 (MQ=255)
tctcCAGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTTATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATAAGAAATAAGTTACAAACGGCGTCGGGTCCGGGACGtt < 1:1569335/150‑1 (MQ=255)
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CATTACCCACAAGCAAATTCGGATCAACAAACTTCGCCTGCTCACTATGCAGGATGGTTTCCAACACTTTTGGGGAAATTTTACAGCCGCAACCAGCTCCGTGGCTGTATTGGGTCAAACGAATCGAGTTCTCGCTCATGGACATCTCCTGTCAATGCAATCCGGGTATGGTAACCCTCATTCCGTGAAGTGATAAGTGAGAGTGTCTGAATTCCTGCGCCTTTGCTCACAATCCAGACAGTTTCGCGACAATTATCAGAAATAAGTTACAAACGGCGTCGGGTCCGGGACGTTAATCG > CP009273/1842127‑1842425
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
