Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F361 I0 R1
|
1353 |
250.7 |
8230166 |
96.0% |
7900959 |
148.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,830,978 |
G→T |
39.1% |
D217Y (GAT→TAT) |
ynjB → |
putative ABC superfamily transporter periplasmic‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,830,978 | 0 | G | T | 39.1%
| 291.4
/ 238.8
| 235 | D217Y (GAT→TAT) | ynjB | putative ABC superfamily transporter periplasmic‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (61/82); new base T (48/44); total (109/126) |
| Fisher's exact test for biased strand distribution p-value = 1.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
Only 100 of 238 total aligned reads displayed.
AACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGCACATTGCGCCTGTCGCTGAC > CP009273/1830830‑1831126
|
aaCGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACg > 1:1050731/1‑149 (MQ=255)
aCGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGa < 2:2129744/149‑1 (MQ=255)
cgccgcAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTAt < 1:653343/149‑1 (MQ=255)
cgccgcAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGAt < 1:1425081/149‑1 (MQ=255)
gccgcAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATg > 1:355965/1‑149 (MQ=255)
gcAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGa > 1:243737/1‑149 (MQ=255)
aaGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACt > 2:773026/1‑149 (MQ=255)
aGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACtt < 2:3004926/149‑1 (MQ=255)
gCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACttt < 2:4084213/149‑1 (MQ=255)
gCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACttt < 2:3922999/149‑1 (MQ=255)
ccTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTc > 2:2773133/1‑149 (MQ=255)
cTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCg > 1:1610416/1‑149 (MQ=255)
ttACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGc > 1:1762134/1‑149 (MQ=255)
tGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCTCGCCCACCGGACTTTACCCGCACGGCGTGTATTGAACAGTTGCTGATTATGCTGACGCCCGATACCGCCGCATTAAAAGAAGCCCCGGACGATGCGACTTTCGCCCgt > 2:424861/1‑149 (MQ=255)
gAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCTTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCgtgt < 1:3868449/149‑1 (MQ=255)
gAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCgtgt < 1:3869146/149‑1 (MQ=255)
gTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCa > 1:144779/1‑149 (MQ=255)
tttGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCAc < 1:1235543/149‑1 (MQ=255)
ttGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACt < 2:63965/149‑1 (MQ=255)
tGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTg > 1:804278/1‑149 (MQ=255)
cTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCt < 2:3281872/149‑1 (MQ=255)
aaGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTccc > 1:2053516/1‑149 (MQ=255)
aGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCt < 1:2136708/149‑1 (MQ=255)
gCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCtt < 2:1889551/149‑1 (MQ=255)
ccAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTtg < 1:1038981/149‑1 (MQ=255)
cAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTtgt > 2:2420810/1‑149 (MQ=255)
cAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTtgt < 1:2366711/149‑1 (MQ=255)
aTCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTgg < 2:1236112/149‑1 (MQ=255)
tCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGc < 2:9367/149‑1 (MQ=255)
tCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGc < 2:1833584/149‑1 (MQ=255)
ccGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCaa < 1:3083617/149‑1 (MQ=255)
ccGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCaa < 1:511540/149‑1 (MQ=255)
ccGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCaa < 2:3615148/149‑1 (MQ=255)
ggCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAata < 1:2240361/149‑1 (MQ=255)
gCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAatat > 2:1657521/1‑149 (MQ=255)
gCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAatat > 1:1421552/1‑149 (MQ=255)
gCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAatat > 1:1770596/1‑149 (MQ=255)
gCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAatat > 1:2686686/1‑149 (MQ=255)
cACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATc < 2:216761/149‑1 (MQ=255)
aCGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCt < 2:812019/149‑1 (MQ=255)
cGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCtt > 2:326734/1‑149 (MQ=255)
gTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGa < 2:3727909/149‑1 (MQ=255)
ttACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGAt > 2:922657/1‑149 (MQ=255)
ccTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGAtgtg < 2:1050731/149‑1 (MQ=255)
ccTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGAtgtg > 1:2389970/1‑149 (MQ=255)
cTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGtgc > 2:1674162/1‑149 (MQ=255)
cTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGtgc > 1:3074971/1‑149 (MQ=255)
cTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGAGTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGtgc > 2:1675093/1‑149 (MQ=255)
aTCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGtgctg > 1:653974/1‑149 (MQ=255)
tCCGCGCCCACGGTACTTTACCGGCAGGGCGTTTCTTTAACTGTTGCTGATTATGCTGACGCCCGATCCCGCCGAATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGtgctgc < 1:2835964/149‑1 (MQ=255)
gcgcCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATc < 1:2899912/149‑1 (MQ=255)
gcCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCg < 2:2338320/149‑1 (MQ=255)
ccACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTa < 1:2517884/149‑1 (MQ=255)
ccACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTa > 1:3283856/1‑149 (MQ=255)
aCCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTAtt < 1:1997805/149‑1 (MQ=255)
ggACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTtgt < 1:3420721/149‑1 (MQ=255)
aCTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGGATTTGTgg > 1:790634/1‑149 (MQ=255)
tACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGcgcg > 2:2646181/1‑149 (MQ=255)
aCCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGa > 2:250277/1‑149 (MQ=255)
ggCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGaagg > 2:17272/1‑149 (MQ=255)
cACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGaaggaa < 2:3855222/149‑1 (MQ=255)
gCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGaaggaaagga < 2:3618107/149‑1 (MQ=255)
gCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGaaggaaagga > 2:2452256/1‑149 (MQ=255)
gCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGaaggaaagga < 2:3216246/149‑1 (MQ=255)
cGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGAt < 2:1762134/149‑1 (MQ=255)
gTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGAtt < 1:906427/149‑1 (MQ=255)
gTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGAtt < 1:3463506/149‑1 (MQ=255)
gTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGAtt < 2:1027213/149‑1 (MQ=255)
tttCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGAttt < 2:3522186/149‑1 (MQ=255)
tttCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGAATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGAttt < 1:3462579/149‑1 (MQ=255)
ttCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTc < 1:2997515/149‑1 (MQ=255)
tCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTcc < 2:1378058/149‑1 (MQ=255)
cTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTccc < 2:2265607/149‑1 (MQ=255)
ttGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCg > 2:2977462/1‑149 (MQ=255)
aaCAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCt > 2:967487/1‑149 (MQ=255)
aGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCa < 1:636261/149‑1 (MQ=255)
gTTGCGGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACGTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCAc < 2:3494560/149‑1 (MQ=255)
gATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCcgcgc > 1:3982083/1‑149 (MQ=255)
gATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCcgcgc < 1:1355057/149‑1 (MQ=255)
tGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCggatg < 1:472141/149‑1 (MQ=255)
gCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCggatgg > 1:3021366/1‑149 (MQ=255)
tGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCggatggat < 1:411186/149‑1 (MQ=255)
cGATCCCGCCGCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTctgc > 1:1160977/1‑149 (MQ=255)
gATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTctgct < 1:326734/149‑1 (MQ=255)
ccgccgCATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGaaa < 1:1693582/149‑1 (MQ=255)
ccgcATTAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGcc < 1:2589207/149‑1 (MQ=255)
cATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGc < 2:2825105/149‑1 (MQ=255)
aTTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGca > 2:585556/1‑149 (MQ=255)
ttAAAAGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGACAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGcac > 2:1422248/1‑149 (MQ=255)
ttAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGcac < 2:1553593/149‑1 (MQ=255)
aaaaGAAGCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCTTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGCACAt < 2:2611732/149‑1 (MQ=255)
aaaGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGCACAtt > 2:194814/1‑149 (MQ=255)
aagaagCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGCACATTg > 1:727709/1‑149 (MQ=255)
agaagCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGCACATTgc < 1:3144635/149‑1 (MQ=255)
agCGCCGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGCACATTGCGcc > 1:3015870/1‑149 (MQ=255)
gcgcCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGCACATTGCGCCt > 1:618934/1‑149 (MQ=255)
gcCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGCACATTGCGCCTGt > 2:3585224/1‑149 (MQ=255)
ccGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGCACATTGCGCCTGTc > 1:3620711/1‑149 (MQ=255)
cGGACTATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGCACATTGCGCCTGTCg > 2:145392/1‑149 (MQ=255)
gATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGCACATTGCGCCTGTCGCTGAc > 2:783126/1‑149 (MQ=255)
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AACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCCGCGCCCACCGGACTTTACCGGCACGGCGTTTCTTGAACAGTTGCTGATTATGCTGACGCCCGATCCCGCCGCATTAAAAGAAGCGCCGGACGATGCGACTTTCGCCCGTGTCACTGCTCCCTTGTGGCAATATCTTGATGTGCTGCATCCGTATTTGTGGCGCGAAGGAAAGGATTTCCCGCCTTCACCCGCGCGGATGGATGCTCTGCTGAAAGCCGGCACATTGCGCCTGTCGCTGAC > CP009273/1830830‑1831126
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
