Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F204 I0 R1 1155 255.8 8356456 95.7% 7997128 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,663,639 G→T 30.8% R71R (CGG→AGG)  ynfL ← LysR family putative transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,663,6390GT30.8% 470.9 / 197.3 236R71R (CGG→AGG) ynfLLysR family putative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base G (82/81);  new base T (38/35);  total (120/116)
Fisher's exact test for biased strand distribution p-value = 8.88e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 240 total aligned reads displayed.

TAATCACGGCGAAACAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCC  >  CP009273/1663491‑1663788
                                                                                                                                                    |                                                                                                                                                     
tAATCACGGCGAAACAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGa                                                                                                                                                      <  2:3900671/150‑1 (MQ=255)
       ggCGAAACAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTg                                                                                                                                               >  2:4022953/1‑150 (MQ=255)
       ggCGAAACAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTg                                                                                                                                               <  1:2437216/150‑1 (MQ=255)
       ggCGAAACAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTg                                                                                                                                               <  2:653179/150‑1 (MQ=255)
       ggCGAAACAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTg                                                                                                                                               <  1:1257058/150‑1 (MQ=255)
        gCGAAACAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGc                                                                                                                                              <  1:3243951/150‑1 (MQ=255)
          gAAACAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCaa                                                                                                                                            >  1:941639/1‑150 (MQ=255)
          gAAACAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCaa                                                                                                                                            >  1:1307972/1‑150 (MQ=255)
           aaaCAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAg                                                                                                                                           >  1:3701146/1‑150 (MQ=255)
             aCAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGaa                                                                                                                                         <  1:1731795/150‑1 (MQ=255)
             aCAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGaa                                                                                                                                         <  1:2855285/150‑1 (MQ=255)
              cAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGaaa                                                                                                                                        <  2:935719/150‑1 (MQ=255)
               aGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAAc                                                                                                                                       >  1:2046853/1‑150 (MQ=255)
                gCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACt                                                                                                                                      <  1:1909606/150‑1 (MQ=255)
                gCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACt                                                                                                                                      <  1:698961/150‑1 (MQ=255)
                   aTAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGtt                                                                                                                                   <  2:2519122/150‑1 (MQ=255)
                    tAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGttt                                                                                                                                  >  1:413067/1‑150 (MQ=255)
                     aaCGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGtttt                                                                                                                                 <  2:937207/150‑1 (MQ=255)
                       cGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTcc                                                                                                                               >  1:929972/1‑150 (MQ=255)
                       cGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTcc                                                                                                                               >  1:351271/1‑150 (MQ=255)
                        gTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCct                                                                                                                              >  1:1401675/1‑150 (MQ=255)
                        gTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCct                                                                                                                              <  2:3907976/150‑1 (MQ=255)
                        gTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCct                                                                                                                              <  2:3592076/150‑1 (MQ=255)
                         tATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCctg                                                                                                                             <  2:1002558/150‑1 (MQ=255)
                         tATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCctg                                                                                                                             >  2:1503268/1‑150 (MQ=255)
                           tCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCctgct                                                                                                                           <  1:1771321/150‑1 (MQ=255)
                            cGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCctgctg                                                                                                                          <  1:2801173/150‑1 (MQ=255)
                               acacCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCg                                                                                                                       <  2:758333/150‑1 (MQ=255)
                                cacCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGt                                                                                                                      <  2:2934478/150‑1 (MQ=255)
                                cacCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGt                                                                                                                      >  2:3578502/1‑150 (MQ=255)
                                cacCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGACAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGt                                                                                                                      <  2:3813736/150‑1 (MQ=255)
                                 acCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTc                                                                                                                     >  2:2567230/1‑150 (MQ=255)
                                  ccGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCa                                                                                                                    <  2:2013088/150‑1 (MQ=255)
                                   cGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAg                                                                                                                   <  2:4105995/150‑1 (MQ=255)
                                        gAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATa                                                                                                              >  2:2729381/1‑150 (MQ=255)
                                        gAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATa                                                                                                              >  2:1585695/1‑150 (MQ=255)
                                             aaaGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTCTCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTg                                                                                                         >  2:3763288/1‑150 (MQ=255)
                                               aGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCg                                                                                                       <  2:3383253/150‑1 (MQ=255)
                                                 gAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGAt                                                                                                     >  1:2486503/1‑150 (MQ=255)
                                                  aGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGAtt                                                                                                    <  1:2157938/150‑1 (MQ=255)
                                                  aGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGAtt                                                                                                    <  2:2963948/150‑1 (MQ=255)
                                                  aGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGAtt                                                                                                    <  2:2963843/150‑1 (MQ=255)
                                                   gCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTg                                                                                                   >  2:1532101/1‑150 (MQ=255)
                                                    ccGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTgg                                                                                                  <  1:601421/150‑1 (MQ=255)
                                                     cgacgaAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGt                                                                                                 >  1:2825923/1‑150 (MQ=255)
                                                      gacgaAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGtt                                                                                                <  2:3053105/150‑1 (MQ=255)
                                                      gacgaAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGtt                                                                                                <  2:3206734/150‑1 (MQ=255)
                                                        cgaAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCg                                                                                              >  2:2724607/1‑150 (MQ=255)
                                                         gaAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGt                                                                                             >  2:2845215/1‑150 (MQ=255)
                                                         gaAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGt                                                                                             >  2:1391657/1‑150 (MQ=255)
                                                           aGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCATGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGc                                                                                           >  1:3724934/1‑150 (MQ=255)
                                                              aaaaCCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCcag                                                                                        <  2:4025164/150‑1 (MQ=255)
                                                              aaaaCCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCcag                                                                                        >  2:2325519/1‑150 (MQ=255)
                                                                 aCCACTGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATACACCCTAGACAGGATTTGCCGACTATCTGCAAGTAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCcagcag                                                                                     <  2:2001350/150‑1 (MQ=255)
                                                                  ccAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGt                                                                                    <  1:2069974/150‑1 (MQ=255)
                                                                    aaTGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCg                                                                                  >  2:283604/1‑150 (MQ=255)
                                                                    aaTGCGCAACTCCCCCGCTTCACCCTGAAGCAGACTTTAAGCGCGAGCGGCAGCGTCATCCACCGTAGACAGGATTTGACGACTATCTGAAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCg                                                                                  >  2:4164818/1‑150 (MQ=255)
                                                                      tGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCggg                                                                                >  1:4053493/1‑150 (MQ=255)
                                                                         gcAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCAc                                                                             >  1:1024414/1‑150 (MQ=255)
                                                                         gcAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCAc                                                                             >  1:3291277/1‑150 (MQ=255)
                                                                         gcAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCAc                                                                             >  1:3802995/1‑150 (MQ=255)
                                                                          cAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCAcc                                                                            >  2:154550/1‑150 (MQ=255)
                                                                           aaCTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCa                                                                           >  2:1179518/1‑150 (MQ=255)
                                                                           aaCTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCa                                                                           >  1:3968432/1‑150 (MQ=255)
                                                                            aCTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCaa                                                                          >  1:3411897/1‑150 (MQ=255)
                                                                                 cccGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATttgt                                                                     >  1:1209216/1‑150 (MQ=255)
                                                                                 cccGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATttgt                                                                     >  1:2948222/1‑150 (MQ=255)
                                                                                  ccGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATttgtt                                                                    <  2:872173/150‑1 (MQ=255)
                                                                                  ccGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATttgtt                                                                    <  2:1234891/150‑1 (MQ=255)
                                                                                  ccGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATttgtt                                                                    >  1:1612121/1‑150 (MQ=255)
                                                                                   cGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATttgttg                                                                   >  1:3712602/1‑150 (MQ=255)
                                                                                      ttCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTc                                                                >  2:505865/1‑150 (MQ=255)
                                                                                        cACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCa                                                              >  1:3210020/1‑150 (MQ=255)
                                                                                        cACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCa                                                              >  2:1286496/1‑150 (MQ=255)
                                                                                        cACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCa                                                              <  1:2759655/150‑1 (MQ=255)
                                                                                         aCCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAg                                                             <  2:339801/150‑1 (MQ=255)
                                                                                             tGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCCTAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGcc                                                         >  2:2228476/1‑150 (MQ=255)
                                                                                              gATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCt                                                        <  2:1680093/150‑1 (MQ=255)
                                                                                                tGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGa                                                      <  1:3558465/150‑1 (MQ=255)
                                                                                                    gCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATct                                                  <  1:3087316/150‑1 (MQ=255)
                                                                                                             cgcgAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTa                                         <  2:1032044/150‑1 (MQ=255)
                                                                                                              gcgAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACAAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAg                                        <  1:2132002/150‑1 (MQ=255)
                                                                                                                      cAGCGTCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGtt                                >  2:569840/1‑150 (MQ=255)
                                                                                                                      cAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGtt                                >  1:2636792/1‑150 (MQ=255)
                                                                                                                       aGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTg                               <  1:1409314/150‑1 (MQ=255)
                                                                                                                           tCATCCACCATAGACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGaa                           <  1:1123423/150‑1 (MQ=255)
                                                                                                                            cATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGaaa                          <  2:4117114/150‑1 (MQ=255)
                                                                                                                               ccaccaTAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAatat                       <  2:2847004/150‑1 (MQ=255)
                                                                                                                                  ccaTAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCa                    <  2:2428521/150‑1 (MQ=255)
                                                                                                                                   caTAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAg                   <  1:2365932/150‑1 (MQ=255)
                                                                                                                                      aGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCg                <  1:781273/150‑1 (MQ=255)
                                                                                                                                       gACAGGATTTGCCTACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCgg               >  2:1949011/1‑150 (MQ=255)
                                                                                                                                        aCAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCggg              >  2:2944903/1‑150 (MQ=255)
                                                                                                                                          aGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCa            <  1:888104/150‑1 (MQ=255)
                                                                                                                                          aGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGGTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCa            <  1:669846/150‑1 (MQ=255)
                                                                                                                                             aTTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCAgcg         <  1:3914847/150‑1 (MQ=255)
                                                                                                                                             aTTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCAgcg         >  2:3168827/1‑150 (MQ=255)
                                                                                                                                                tGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCAgcggcg      <  1:527320/150‑1 (MQ=255)
                                                                                                                                                  ccGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGgcgcg    >  1:1898769/1‑150 (MQ=255)
                                                                                                                                                    gACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGcc  >  2:134952/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
TAATCACGGCGAAACAGCGATAACGTATCGGACACCGCCCGAATAAAAGGAGCCGACGAAGTAAAACCAATGCGCAACTCCCCCGCTTCACCCTGATGCAGCCTTTCAGCGCGAGCGGCAGCGTCATCCACCATAGACAGGATTTGCCGACTATCTGCAAGAAACTGTTTTCCTGCTGCCGTCAGCAATACACTGCGATTGGTTCGTGCCAGCAGTCGGGCACCAATTTGTTGCTCCAGCGCCTGAATCTGCTGACTTAGCGGCGGTTGCGAAATATTCAGGCGGGCAGCGGCGCGCC  >  CP009273/1663491‑1663788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A