New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2349901 =	38 (1.190)	7 (0.240)	7/238	2.3	16.1%	intergenic (+8/+34)	yfaH/glpQ	pseudogene/periplasmic glycerophosphodiester phosphodiesterase
	?	NC_000913	2349927 =	38 (1.290)					intergenic (+34/+8)	yfaH/glpQ	pseudogene/periplasmic glycerophosphodiester phosphodiesterase
Rejected: Frequency below/above cutoff threshold.

TAAACTGCCTGAATACACTCCTGATGTGAATCAGTTATATGATGCTCTGTATAACAAAGCGGGTGTAAATGGGCTGTTTACTGATTTCCCTGATAAGGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGCGCCATCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2350058‑2349901 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccatcctgCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGACCGCACGGT  >  NC_000913/2349927‑2350072                                                                                                                                                                                                                                                                                                                  TAAACTGCCTGAATACACTCCTGATGTGAATCAGTTATATGATGCTCTGTATAACAAAGCGGGTGTAAATGGGCTGTTTACTGATTTCCCTGATAAGGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGC                                                                                                                                                             <  5:34390/149‑1    ACTGCCTGAATACACTCCTGATGTGAATCAGTTATATGATGCTCTGTATAACAAAGCGGGTGTAAATGGGCTGTTTACTGATTTCCCTGATAAGGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGCGC                                                                                                                                                           >  4:39221/1‑148      TGCCTGAATACACTCCTGATGTGAATCAGTTATATGATGCTCTGTATAACAAAGCGGGTGTAAATGGGCTGTTTACTGATTTCCCTGATAAGGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGCGCCAT                                                                                                                                                        >  2:72278/1‑149        CCTGAATACACTCCTGATGTGAATCAGTTATATGATGCTCTGTATAACAAAGCGGGTGTAAATGGGCTGTTTACTGATTTCCCTGATAAGGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGCGCCATC                                                                                                                                                       <  1:72278/148‑1                                                                                         CCTGATAAGGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTACATGCGCCATCCAGCAGTAACAATACTCTTTATTAAGAAATTTTACTGCCATATCAGGGAAATCAGTAAACAGCCCATTTAAACACGCTTTGT                                                                     >  4:48684/1‑149                                                                                                                 AATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGCGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATA                                                                 <  3:81043/129‑1                                                                                                                 AATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGCGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATA                                                                 >  4:81043/1‑129                                                                                                                   TAAAGAGTAATGTTACTTCAGGATGGCGTTCATGCGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTTCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATT                                            <  3:48684/148‑1                                                                                                                   TAAAGAGTAATGTTACTGCAGGATGGCGTTCATGCGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATT                                            >  2:42766/1‑148                                                                                                                                      AGGATGGCGTTCATGCGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGA                                                                                                      <  7:61862/71‑1                                                                                                                                      AGGATGGCGTTCATGCGCCATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGA                                                                                                      >  8:61862/1‑71                                                                                                                                                        CATCCTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGACCGCA      >  3:69847/1‑149                                                                                                                                                            CTGCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGACCGCACGGT  <  1:42766/149‑1                                                                                                                                                                                                                                                                                                                  TAAACTGCCTGAATACACTCCTGATGTGAATCAGTTATATGATGCTCTGTATAACAAAGCGGGTGTAAATGGGCTGTTTACTGATTTCCCTGATAAGGCAGTAAAATTTCTTAATAAAGAGTAATGTTACTGCAGGATGGCGTTCATGCGCCATCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2350058‑2349901 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccatcctgCAGTAACATTACTCTTTATTAAGAAATTTTACTGCCTTATCAGGGAAATCAGTAAACAGCCCATTTACACCCGCTTTGTTATACAGAGCATCATATAACTGATTCACATCAGGAGTGTATTCAGGCAGTTTATCTGACCGCACGGT  >  NC_000913/2349927‑2350072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.