BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3811200 =	89 (0.960)	9 (0.110)	9/254	5.8	9.3%	intergenic (‑48/+50)	mutM/rpmG	formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33
*	?	NC_000913	3811236 =	95 (1.120)	9 (0.110)	9/254	5.8	9.3%	intergenic (‑84/+14)	mutM/rpmG	formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 107 total aligned reads displayed.

TTGCACCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAAC  >  NC_000913/3811089‑3811384

ttGCACCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACa                                                                                                                                                      >  3:206208/1‑149 (MQ=255)

   cACCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGGTTTTTGTTACATCa                                                                                                                                                   <  3:110817/149‑1 (MQ=255)

    aCCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCa                                                                                                                                                   >  7:13586/1‑148 (MQ=255)

      cAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAg                                                                                                                                                >  2:33044/1‑149 (MQ=255)

      cAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAg                                                                                                                                                >  4:204968/1‑149 (MQ=255)

               gCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGCGGCAAGCAGATAACAAAAAACCCCGACGGAGC‑GAGGTTATTTGTTACATCAAAGCGAG‑Aatta                                                                                                                                      >  4:134471/1‑149 (MQ=255)

                 ggTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑Aattatt                                                                                                                                    <  7:164902/149‑1 (MQ=255)

                  gTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTAttt                                                                                                                                   <  3:280676/149‑1 (MQ=255)

                     cTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGAt                                                                                                                                >  7:319605/1‑149 (MQ=255)

                       aTGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGAttt                                                                                                                              >  5:274495/1‑149 (MQ=255)

                        tGCCGCGGCGGCTGGTTTCAACTTCTGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGAAGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCCGAGC‑GAGGTTTTTAGTTACATCAAAGCCCG‑AATTATTTCAtttt                                                                                                                             >  3:340912/1‑149 (MQ=255)

                        tGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGAtttt                                                                                                                             <  6:2272/149‑1 (MQ=255)

                        tGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGAtttt                                                                                                                             <  4:306344/149‑1 (MQ=255)

                        tGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGAttt                                                                                                                              <  4:206208/148‑1 (MQ=255)

                            gcggcgGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGct                                                                                                                         >  1:111668/1‑149 (MQ=255)

                               gcggcTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGcttct                                                                                                                      <  2:367730/149‑1 (MQ=255)

                               gcggcTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGcttct                                                                                                                      <  2:111668/149‑1 (MQ=255)

                                cggcTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGcttctt                                                                                                                     <  7:348900/149‑1 (MQ=255)

                                 ggcGGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGCTGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCttt                                                                                                                    >  8:311972/1‑149 (MQ=255)

                                  gcTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAAGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTg                                                                                                                   <  7:87987/149‑1 (MQ=255)

                                      gTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTAc                                                                                                                                                       <  1:28280/110‑1 (MQ=255)

                                      gTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTAc                                                                                                                                                       >  2:28280/1‑110 (MQ=255)

                                         tCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCa                                                                                                            >  1:88545/1‑149 (MQ=255)

                                           aaCTTCGGGTAATTAAGGCATAGCATCTACAGGAATGAACAGATGCAGTCAATATGGGGGAAATCAGATAACAAAAAAACCCGACGGATC‑GAGGTTTTTTGTTACATCAAAGAGAG‑AATTATTTGATTTTCGATTCTTTTTAGATCACg                                                                                                          >  3:91883/1‑149 (MQ=255)

                                             cTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTg                                                                                                        >  1:406992/1‑149 (MQ=255)

                                                cGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGGAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCt                                                                                                      <  8:319605/148‑1 (MQ=255)

                                                 gggTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTg                                                                                                     <  2:406992/148‑1 (MQ=255)

                                                  ggTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGc                                                                                                   <  8:13586/149‑1 (MQ=255)

                                                    tAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGa                                                                                                 <  3:204968/149‑1 (MQ=255)

                                                     aaTTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGaa                                                                                                >  5:236717/1‑149 (MQ=255)

                                                     aaTTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGaa                                                                                                >  4:199616/1‑149 (MQ=255)

                                                          aGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTa                                                                                                                 <  4:214677/127‑1 (MQ=255)

                                                          aGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTa                                                                                                                 >  3:214677/1‑127 (MQ=255)

                                                          aGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACt                                                                                           <  1:178489/149‑1 (MQ=255)

                                                          aGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACt                                                                                           >  2:284837/1‑149 (MQ=255)

                                                            gCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTg                                                                                                                                  >  2:397023/1‑108 (MQ=255)

                                                            gCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTg                                                                                                                                  <  1:397023/108‑1 (MQ=255)

                                                            gCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGaacaac                                                                                            <  7:108952/146‑1 (MQ=255)

                                                            gCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGaacaac                                                                                            >  8:108952/1‑146 (MQ=255)

                                                                 gCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCg                                                                                     >  2:297761/1‑148 (MQ=255)

                                                                  cagctcCAGGAATGAACAGAAGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGaa                                                                                   <  1:176187/146‑1 (MQ=255)

                                                                   aTCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTgg                                                                                                    <  5:386211/131‑1 (MQ=255)

                                                                   aTCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTgg                                                                                                    >  6:386211/1‑131 (MQ=255)

                                                                   aTCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAAt                                                                                  >  8:386806/1‑149 (MQ=255)

                                                                   aTCGCCAGGAATGTACAGATGCAGTCAATATGGGGGCAATCTTATAACAATAAAGCCCGCCGGAGC‑GATGGTTTTTGTTACATCAAAGCTAG‑ACTTATTTGATTTTCGCTTCTTTGTAGCTCAGGTGCTGGCGAACAACTGGATCgttt                                                                                  <  4:340912/149‑4 (MQ=255)

                                                                      tcCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAAtttt                                                                               >  5:123854/1‑149 (MQ=255)

                                                                        cAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAATCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAAtttttt                                                                             <  1:182398/149‑1 (MQ=255)

                                                                         aGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTc                                                                            <  6:274495/149‑1 (MQ=255)

                                                                                 aCAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAg                                                                    >  8:118147/1‑149 (MQ=255)

                                                                                   aGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGtt                                                                  >  2:406185/1‑149 (MQ=255)

                                                                                     aTGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGAGCTGCCGAACAACTGGATCGAATATTTTCAGTTCCAGtttt                                                                >  6:172214/1‑149 (MQ=255)

                                                                                         aGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCg                                                            >  1:288640/1‑149 (MQ=255)

                                                                                          gTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCgg                                                           >  3:343882/1‑149 (MQ=255)

                                                                                          gTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCgg                                                           >  7:89280/1‑149 (MQ=255)

                                                                                          gTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCgg                                                           >  7:180616/1‑149 (MQ=255)

                                                                                           tCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCttt                                                                                                                    <  4:61632/91‑1 (MQ=255)

                                                                                              atatGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTa                                                       <  6:170747/149‑1 (MQ=255)

                                                                                                atGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCTAGTTTTTCCGGCTTAg                                                      >  1:96987/1‑148 (MQ=255)

                                                                                                 tGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTa                                                    >  4:233301/1‑149 (MQ=255)

                                                                                                  gggggCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑TATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTc                                                              <  1:310298/138‑1 (MQ=255)

                                                                                                  gggggCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTGTTTGTTACCTCACAGCGAG‑TAGTATTGGAGTTTCGCGTCGTTGTAGATCAGGTGCTGGCGAACAACTGGTTCGAATTTTTTCCGTGCCAGTTTTTccagagcgg                                                      >  2:310298/1‑139 (MQ=255)

                                                                                                   ggggCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACg                                                  <  3:199616/149‑1 (MQ=255)

                                                                                                    gggCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGt                                                 <  1:284837/149‑1 (MQ=255)

                                                                                                              aTAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTc                                                                            >  5:255560/1‑112 (MQ=255)

                                                                                                              aTAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTc                                                                            <  6:255560/112‑1 (MQ=255)

                                                                                                              aTAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGttc                                           <  8:142398/145‑1 (MQ=255)

                                                                                                              aTAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGttc                                           >  7:142398/1‑145 (MQ=255)

                                                                                                              aTAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCg                                       <  3:233301/149‑1 (MQ=255)

                                                                                                               tAACAAAAAACCTCGCTCCGGC‑GGGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGt                                      <  2:322311/149‑1 (MQ=39)

                                                                                                               tAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGt                                      <  7:118147/149‑1 (MQ=255)

                                                                                                                taacaaaaaCCCCGGCGGTGCGGTGGTTTTTTGTAAAAT‑AAAGGGTGTAATTA‑TTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTa                                     <  4:1027/145‑1 (MQ=255)

                                                                                                                 aCAAAAAACCTCGCTCCGGC‑GGGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTc                                                              <  5:91019/123‑1 (MQ=38)

                                                                                                                 aCAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAg                                    <  2:88545/149‑1 (MQ=255)

                                                                                                                 aCAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAg                                    >  4:306832/1‑149 (MQ=255)

                                                                                                                  cAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGt                                   >  1:329181/1‑149 (MQ=255)

                                                                                                                   aaaaaaCCTCGCTCCGGC‑GGGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGt                                                                         <  8:70289/110‑1 (MQ=38)

                                                                                                                   aaaaaaCCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTg                                  >  8:170858/1‑149 (MQ=255)

                                                                                                                   aaaaaaCCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTg                                  >  5:246656/1‑149 (MQ=255)

                                                                                                                   aaaaaaCCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTg                                  >  1:40577/1‑149 (MQ=255)

                                                                                                                   aaaaaaCCCCGCCGGAGC‑GAGGTGTTTTGTTACATCAAAGCGAG‑AAGTATTGGCGTTTCGCGTCTGTGTAGAGCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGGGTTTCCGGCTTAGTACGGGTGTTCTGCGGAGTg                                  >  7:405931/1‑149 (MQ=255)

                                                                                                                          cccGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAg                            >  1:322362/1‑148 (MQ=255)

                                                                                                                          cccGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAg                            >  1:397570/1‑148 (MQ=255)

                                                                                                                               cgGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGa                      <  6:236717/149‑1 (MQ=255)

                                                                                                                                ggATC‑GAGGTTTTTTTTTACATCAAAGCGAG‑TATTATTTGATTTTCGCTTCTTTGTAGATGAATTGCTGTCGAACAACTGTATCTAATTTTTTCAGTTCCAGTTTTTCCTGCTTAGTACGTTTGTTCTTCGTAGTTGTATAGAAGttaa                     <  4:91883/149‑4 (MQ=255)

                                                                                                                                ggAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGAc                     <  7:170858/149‑1 (MQ=255)

                                                                                                                                ggAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGAc                     <  1:297761/149‑1 (MQ=255)

                                                                                                                                    c‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGACCAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGttcttc                                        <  8:24118/126‑1 (MQ=255)

                                                                                                                                    c‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGttcttc                                        >  7:24118/1‑126 (MQ=255)

                                                                                                                                    c‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGt                 <  2:406226/149‑1 (MQ=255)

                                                                                                                                       aGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTAc               >  6:240517/1‑149 (MQ=255)

                                                                                                                                       aGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTAc               >  8:151995/1‑149 (MQ=255)

                                                                                                                                       aGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTAc               >  8:373842/1‑149 (MQ=255)

                                                                                                                                         gTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACca             <  7:151995/149‑1 (MQ=255)

                                                                                                                                         gTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACca             <  7:373842/149‑1 (MQ=255)

                                                                                                                                          ttttttGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGTCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACcag            <  1:33044/149‑1 (MQ=255)

                                                                                                                                                 ttACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTACGTAGTGGTATAGAAGTGACCAGTACCAGCagaag      >  4:53831/1‑148 (MQ=255)

                                                                                                                                                   aCATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGaaa   >  2:296473/1‑149 (MQ=255)

                                                                                                                                                    cATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGaaa   <  2:40577/148‑1 (MQ=255)

                                                                                                                                                    cATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGaaa   <  2:329181/148‑1 (MQ=255)

                                                                                                                                                    cATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAAc  <  7:386806/149‑1 (MQ=255)

TTGCACCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAG‑AATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAAC  >  NC_000913/3811089‑3811384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.