Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AE015451_phaM14,889,6440GC34.2% 405.6 / 124.3 228intergenic (+90/‑63)hyi CDS (hydroxypyruvate isomerase)/glxR CDS (tartronate semialdehyde reductase)–/–
Reads supporting (aligned to +/- strand):  ref base G (104/25);  new base C (0/67);  total (106/122)
Fisher's exact test for biased strand distribution p-value = 7.85e-32
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 228 total aligned reads displayed.

CTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGG  >  AE015451_phaM1/4889522‑4889777
                                                                                                                          |                                                                                                                                     
cTGGGCTGGCTGAAAACCAACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCAGCAAAGCAGGTGCCATCCACCAAGGTGTCTGCTTCGTGGGCGAGCCCGCTCCCACCgg                                                                                                                         >  2:8797266/1‑137 (MQ=37)
     ttggcggAAACCCCACAACAAAATCTGAGGAACACCTTGGGACCTTGTGGGAGGGGGCTCTCCCGAGAACACCGGCAAAGCTGGTGCCCCCCCCCGGTTTTTCTTCTTCGGGGGCGACCCCGCTCCCACAGGGGGcc                                                                                                                    <  2:6147768/136‑1 (MQ=255)
      tggctgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGGTCTCCCCCGCACACCGGCAAAAACTGTGCTACCCCCCCAGTTTTTTTCTTCTCCGGCGAGCCCACTCCCCCAAGGGGACa                                                                                                                   >  2:17357858/1‑137 (MQ=255)
       ggctgAAACCCCCCAACGCAGTTTGAGAACCACCTTGGGCCTTTGTGGGAGTGGTTTCGCCTGAGAACACGGGCAAGTTTGGTGCCCTCCACTGGTTTGTTTGCTTCTCGGGCGATCCCGCTCCCACAGGGGGCCaa                                                                                                                  <  2:18742565/137‑1 (MQ=255)
       ggcggAAACCCCCCAACGCAATCGGAGAAACAACTTGGGACCCTTTGGGGGTGGTCTCTCCTGCGAACACTGGCAAAGCTGGTGCCATCCACCGAGTTTTCTGCTTCGGGGTCGAGCCCGCTCCCACAGGGGGCCaa                                                                                                                  <  2:12163937/137‑1 (MQ=255)
            aaacCCCAAAACAAAATCTGAGAAAAACCTGGGAACCTTGGGGGAGTGGCCTCACCAAAAAACACCGAAAAAACCGGTGCCACCCCCCGATTTTTTTGTTCCGTGGCCGACCCCGCTCCCACAGGGGGCCAAAgctt                                                                                                             <  2:3122381/137‑1 (MQ=255)
            aaacCCCAAAAAGAAATCGGAGAAAAACCTCGGGACCCTTTGGGAGTGGGCTCACCCCAAAACACCAGCAAAACCGGTGCCCCCCCCCGCTTGGTCTTCTCCTTGGTCGACCCCGCTCCCACAGGGGGCCAAAgctt                                                                                                             <  2:12534867/137‑1 (MQ=255)
            aaaaCCCCCAACGCAACCTCAGAAACACCTCGGCACCCTGTGGGAGCGGGCTCGCCTACGAACACCGACAAGACCGGTGCCATCCACCGGGTTGTTTGTTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAgctt                                                                                                             <  2:3900000/137‑1 (MQ=255)
              aaCCCACAACGAACTCGGGGGAACAATCTGGGACTTTGTGGGAGCGGTCCCGCCCGCGAACACTGGCAAATCCGGTGCCACCCACCGGGTTTTTGGTTTCGTGGGCGAGCCCGCTCCCACAGGGGGCCAAAgcttgc                                                                                                           <  2:4605514/137‑1 (MQ=255)
                      aCGAAATCGGAGAAACACCTGGGGACCTTGTGGGAGCGGGCTCTCCCACGAACACTGGAAAATCTGGTGCCATCCACCGGGTTGTTTGCTTCGCGGGAGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGata                                                                                                   <  2:2984527/137‑1 (MQ=255)
                              tgggaaacgacGCGGGACCTGGGGGGGGTGGGTTCGCCCAAGAACACTAGCAACCCTGTTGCCCCCCACCGAGTTTTTTGTTTCGGGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGAGATCACAAtt                                                                                           <  2:3201015/132‑1 (MQ=255)
                              tGAGGAACACTTCGGGACCTTTTGGGAGCGGGCTCGCCTGCAAACACTGGAAAGGCCGGTGCCGTCCACTGGTTTTTTTGCTTCATGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAAtt                                                                                           <  1:18578703/137‑1 (MQ=255)
                                gggAACAACTCGGAACTCTTTGGGAGCGGTCTCGCCCGCGAACACCGGAAAAGCCGGTGCCATCCACCGAGTTGTTTGTTCCGTGGGCAGCCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTAc                                                                                         <  2:16822620/136‑1 (MQ=25)
                                          tgggACCTTGTGGGGGCGGGCTTGCCAACAAACACCGAAAAAGCCGGGGCCATCAACCGGGTTGTTTGTTTTGGGGTCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTaa                                                                               <  1:14052614/136‑1 (MQ=255)
                                             aaCCTTGTGGGGGGGGGCTCACCTGAAAAAACCGGAAAGTCTGGTGCCATCCACTGATTTGTCGGCTTTGTGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAAttt                                                                            <  2:4639790/136‑1 (MQ=255)
                                                                  cccGCGACCCCCGTCAGGGCGGGTGCCATCCCTCGGGTTTTTTGTTTCTGGGGCGCCCCCGCTCCCACAGTGGGCCAAAGCTTGCTTGAGATATCACAATTACAACGAGTTAATTTCTCATGGCTAAAATCGGTTTc                                                       <  2:509928/137‑1 (MQ=255)
                                                                   cctaaaaCACGGGCAAAGTTGGTCCCATCCACCGGTTTTTCTTTTTTGTGGCCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCa                                                      <  1:10430851/132‑1 (MQ=255)
                                                                    cgagAACACCGGCAAAGCCGTTGCCACCCACTGAGTTGTCTGCTTCGCGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCAt                                                     <  2:13450549/134‑1 (MQ=255)
                                                                        aaCACCGGCAAGTCTGGTGCCATCCACGGAGTTGTCTTCTTTGTGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGc                                                 <  2:15055912/137‑1 (MQ=255)
                                                                        aaCACCGGCAAATCTGTGGCCCCCCACCGGTTTGTTTGTTTCGTGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGc                                                 <  2:16889154/137‑1 (MQ=255)
                                                                         acacCGACAAATCTGTTGCCACCCACCGGGTTTTCGTTTCCACGAGCGACCCCGCTCCCACAGGGGGNCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCa                                                <  1:16267084/137‑1 (MQ=255)
                                                                              ggaaaaGCCGGTGCCACCCCCCGGTTTGTCTGCTTCGTGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGc                                           <  2:5687838/134‑1 (MQ=255)
                                                                              ggCAACGCCGGTGCCATCCACCGAGTTGCTTGCTTCGAGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATTGGCACCGGc                                           <  2:17861208/137‑1 (MQ=255)
                                                                               gaaaaTCCGGTGCCATCCACCGGTTTGTTTTCTTCGAGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGca                                          <  2:7344299/135‑1 (MQ=255)
                                                                               aaaaaTCCGGGCCCACCCACCGGGTTGCCTGCTTCGTGGGCCATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCTGTTTCATCGGCACCGGca                                          <  1:9433204/135‑1 (MQ=255)
                                                                                cAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcat                                         >  2:8475276/1‑137 (MQ=255)
                                                                                cAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcat                                         >  1:6663678/1‑137 (MQ=255)
                                                                                cAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcat                                         >  1:9335058/1‑137 (MQ=255)
                                                                                  aaGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcatca                                       >  2:13099810/1‑137 (MQ=255)
                                                                                  aaGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAACTACAAAGAGGTAATTTCTCATGGCTAACATCGGTTTCATCGGCACCGGcatca                                       >  1:12705411/1‑137 (MQ=255)
                                                                                  aaGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCAACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcatca                                       >  2:1485776/1‑137 (MQ=255)
                                                                                   gtcaggTACCATCCCCCGTGTTGTCGGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcatcat                                      <  2:9128111/133‑1 (MQ=255)
                                                                                    tccGTTGCCATCCCCTGGGTTGTTTGTTTAGCGGGAAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATg                                     <  1:18272970/136‑1 (MQ=255)
                                                                                    gCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGTCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATg                                     <  1:8605256/137‑1 (MQ=255)
                                                                                      tggTGCCGTCCACCGGGTTGTCTGCTCCGAGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATggg                                   <  2:16334666/136‑1 (MQ=255)
                                                                                       ggTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGc                                  >  2:14145812/1‑137 (MQ=255)
                                                                                           ccgtCCACTGGGTTGTCTGCTTCGCGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                              <  2:7818107/134‑1 (MQ=255)
                                                                                           ccacccacTGGGTTTTCTGCTTCGCGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                              <  2:1792686/137‑1 (MQ=255)
                                                                                           ccATCCACCGGTTTTTTGGTTTCGCGGGAAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                              <  1:16391677/137‑1 (MQ=255)
                                                                                           ccATCCACCGGTTTGCTTGCTTCGTGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                              <  2:861110/137‑1 (MQ=255)
                                                                                           ccATCCACCGGGTTTTCTTCTTCGCGGGCACTCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                              <  2:9921525/137‑1 (MQ=255)
                                                                                             aTCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGccc                            >  1:4109055/1‑137 (MQ=255)
                                                                                                cACCGAGTTGTCTGCTTCGCGGGCGAGTCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATg                         <  2:3705942/137‑1 (MQ=255)
                                                                                                 aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                        >  2:13732040/1‑137 (MQ=255)
                                                                                                 aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                        >  1:3987757/1‑137 (MQ=255)
                                                                                                 aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                        >  1:13650662/1‑137 (MQ=255)
                                                                                                 aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                        >  1:2431919/1‑137 (MQ=255)
                                                                                                 aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                        >  1:9847400/1‑137 (MQ=255)
                                                                                                  ccGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGc                       >  1:5409273/1‑137 (MQ=255)
                                                                                                  ccGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGc                       >  1:16399353/1‑137 (MQ=255)
                                                                                                    ggtttttCTGCTTCGCGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTc                     <  2:11717860/131‑1 (MQ=255)
                                                                                                      tttttcttctTCGCGTTCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                   <  1:314002/133‑1 (MQ=255)
                                                                                                      gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                   >  1:4580462/1‑137 (MQ=255)
                                                                                                      gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                   >  2:2395596/1‑137 (MQ=255)
                                                                                                      gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                   >  1:2103948/1‑137 (MQ=255)
                                                                                                      gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                   >  1:17102866/1‑137 (MQ=255)
                                                                                                        tGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGaa                 >  2:14320118/1‑137 (MQ=255)
                                                                                                        tGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGaa                 >  2:4431173/1‑137 (MQ=255)
                                                                                                        tGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGaa                 >  2:6603119/1‑137 (MQ=255)
                                                                                                        tGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGaa                 >  2:106309/1‑137 (MQ=255)
                                                                                                        tGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGaa                 >  1:10282228/1‑137 (MQ=255)
                                                                                                         gTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGACTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGacc                >  2:10270161/1‑135 (MQ=255)
                                                                                                          tCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAANCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAAcc               >  1:15257147/1‑137 (MQ=255)
                                                                                                           cTGCTTCGCGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCt              <  1:11500120/137‑1 (MQ=255)
                                                                                                           cTGCTTCGCGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCTGCATCATGGGCAAGCCCATGGCTCAGAACCt              <  2:12514433/137‑1 (MQ=255)
                                                                                                           cTGCTCCTCGGGTGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAATAGGTAATTTCTCATGGCTAAACTCGGTTTCATCGGCACCGGCATCATGGTCAAGCCCACGGCTCAGAACCt              <  2:8045060/137‑1 (MQ=255)
                                                                                                             gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc            >  1:14993600/1‑137 (MQ=255)
                                                                                                             gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc            >  2:12590466/1‑137 (MQ=255)
                                                                                                             gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc            >  2:2018108/1‑137 (MQ=255)
                                                                                                             gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc            >  1:16802013/1‑137 (MQ=255)
                                                                                                             gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc            >  1:2907803/1‑137 (MQ=255)
                                                                                                             gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc            >  2:7279114/1‑137 (MQ=255)
                                                                                                               ttCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaa          >  2:13901459/1‑137 (MQ=255)
                                                                                                               ttCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaa          >  1:14800187/1‑137 (MQ=255)
                                                                                                                tcctgggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaa         <  2:7424122/133‑1 (MQ=255)
                                                                                                                tCGCGGGCTACCCCGCTCCCACAGTGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaa         <  2:10512922/137‑1 (MQ=255)
                                                                                                                 tgcgGGCGCCCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  1:8895082/136‑1 (MQ=255)
                                                                                                                 tgcgGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  1:13349847/136‑1 (MQ=255)
                                                                                                                 cgtgggCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:7056544/134‑1 (MQ=255)
                                                                                                                 cgtgggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAACTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:3372306/134‑1 (MQ=255)
                                                                                                                 cgtggccGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  1:6358427/131‑1 (MQ=255)
                                                                                                                 cgggggCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:5001313/134‑1 (MQ=255)
                                                                                                                 cgcgGGCGCTCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:11396134/137‑1 (MQ=255)
                                                                                                                 cgcgGGCGAGCCCGTTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:7550774/137‑1 (MQ=255)
                                                                                                                 cgcgGGCGAGCCCGCTCCCACATGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTGCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:13984232/137‑1 (MQ=255)
                                                                                                                 cgcgGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  1:5198566/137‑1 (MQ=255)
                                                                                                                 cgcgGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:8398382/137‑1 (MQ=255)
                                                                                                                 cgcgGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:16030236/137‑1 (MQ=255)
                                                                                                                 cgcgGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  1:17669500/137‑1 (MQ=255)
                                                                                                                 cgcgGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:18005204/137‑1 (MQ=255)
                                                                                                                  gcgGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAg       >  2:6844820/1‑137 (MQ=255)
                                                                                                                    gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc     >  1:16618861/1‑137 (MQ=255)
                                                                                                                    gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc     >  2:15956221/1‑137 (MQ=255)
                                                                                                                    gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc     >  1:8276901/1‑137 (MQ=255)
                                                                                                                      gCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAg   >  1:10089988/1‑137 (MQ=255)
                                                                                                                      gCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAg   >  2:14315539/1‑137 (MQ=255)
                                                                                                                      gCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAg   >  2:4271868/1‑137 (MQ=255)
                                                                                                                      gCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATAACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAg   >  2:17560001/1‑137 (MQ=255)
                                                                                                                       cGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAgg  <  1:6061329/137‑1 (MQ=255)
                                                                                                                       cGAGCCCGCCCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAgg  <  1:11959422/137‑1 (MQ=255)
                                                                                                                          |                                                                                                                                     
CTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGG  >  AE015451_phaM1/4889522‑4889777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑