| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451_phaM1 | 445,112 | 0 | C | T | 31.8% | 167.1 / 11.9 | 89 | intergenic (+85/‑203) | PP_0367 CDS (conserved protein of unknown function)/PP_0368 CDS (putative Acyl‑CoA dehydrogenase) | –/– |
| Reads supporting (aligned to +/- strand): ref base C (31/29); new base T (4/24); total (35/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.38e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAA > AE015451_phaM1/444976‑445248 | cgtcAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTc < 1:8177158/137‑1 (MQ=255)cgtcAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTc < 1:8177205/137‑1 (MQ=255) gtcAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCt < 1:3970228/137‑1 (MQ=255) gtcAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCt < 1:3970267/137‑1 (MQ=255) gtcAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCt < 2:2195801/137‑1 (MQ=255) tcAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTg < 2:6067758/137‑1 (MQ=255) tcAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTg < 2:6067804/137‑1 (MQ=255) aaGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGGTTGGCCGCGAAGGCGTACGATCCG‑AAAAAAACTTTGTTTGGt > 2:13189842/1‑137 (MQ=255) ggCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑Cg < 2:12288370/137‑1 (MQ=255) gCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑Cgg < 2:16126604/137‑1 (MQ=255) cATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑Cggg < 2:17618769/137‑1 (MQ=255) ccGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGGTTGTCCCTGAACGCGTCCAATCCA‑ACAACAAATTTTTTTGGT‑Ctggacc > 2:3954878/1‑134 (MQ=255) ctacgaAATGCTTTGCCGGATCACCGACACCTCTTCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑Cctc < 2:12452641/135‑1 (MQ=255) cgacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑Cctc < 1:5154403/137‑1 (MQ=255) cgacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑Cctc < 2:10385170/137‑1 (MQ=255) gacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑Cctct < 2:129612/137‑1 (MQ=255) gacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑Cctct < 1:17668359/137‑1 (MQ=255) gacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑Cctct < 1:2063131/137‑1 (MQ=255) gacgaAATGCTTGGCCGGATCAGCGACACCTGCGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTATGAGTGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑Cctct < 2:16326420/137‑1 (MQ=255) acgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGATTTTCCTCTAACGCGTCCGCCCAG‑AAAAAAAATTTGTTCGGT‑Ctggtacctt > 2:4816065/1‑131 (MQ=255) agggtttGGCTGGATCATCGACACCTACGCCTGAATATTTGCGTCATCCCCTGTTTCAGCGCCTGCTTTGGAGGAGCGGGCTTGCCCGTGAGTGCTCCCGGTAAG‑ACAACAGTTTTGTTTGGT‑GGGG‑CCTTTTcgcg < 2:18837935/132‑1 (MQ=255) gCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCt > 1:8182349/1‑117 (MQ=255) gCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCt < 2:8182349/117‑1 (MQ=255) gCTGGGCCGGACCACAAACACCTACCCCTGAATACTTGCTCCCCCCCCTATTTCAACTCCTGCTTTGTAGGAATGGTCTTGCCTGCGAATTCGTCCGATCAA‑ACAACACTTTTGTCTGGT‑CGGG‑CCTCTTCGCggga < 2:14093294/137‑2 (MQ=255) tGGCCGGACCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGAGTGCCCACGAACGTGTCTAACCCG‑AAAAAAACTTTGTTTGTT‑TGGG‑CCTCCTCTCGGACAAg > 2:9790552/1‑137 (MQ=255) gCCGGATCATCGACACCTACGCCTGAATACTTTCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAT‑ACAACAATTTTGCCTGGT‑CGGG‑CCTCTTCGCGGGCAAGcc < 2:8504750/137‑1 (MQ=255) gCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTTCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGcc < 2:7076484/137‑1 (MQ=255) cGGATCATCGACCCCGACGCCGAAATACTTGCTTCCTCCCCTCTTCCATCTCTTGCTTTGTAGGAGTGGGCTTGCCCGCGAATGCTCCCGCCCAG‑ACAACACTTTTTTTTGGT‑CGGG‑CCTCTTCGCGGACAACCCCg < 2:12932661/137‑1 (MQ=255) cTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCACGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTggcatggcat > 1:15003563/1‑137 (MQ=255) tCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAA‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCCTCGCGGGCAAAACCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGa > 1:10512709/1‑137 (MQ=255) cccTATTTCAGCGCCTGCCTTGTAGGAGCGGGGTTTTCCCCGAATGCGTCCTACCCA‑ACAACAAATCTTTCTTGT‑TGGG‑TCTCTTCTCTAGCAAACCCCCCCCCCCCCAAGGTTGTGGCATGGAATGACTGAtcttc > 2:8424201/1‑133 (MQ=255) ttCATCACCTGCTTTGGGGGGGTGGGCTTCCCCGCGAGTGCTTCTGCTCAG‑ACAACGTTTTTTTTTGTT‑CTTT‑CTTCTTCGCGGGCAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCAtttt < 1:17633657/137‑1 (MQ=255) ctttctttGGAGGGGCGGTCTTACCCAAGAGTGTTTCCAACCAA‑AAAACACTTTT‑TTTGGT‑TGGGTCCTTTTCGCGAACAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGc < 2:6380874/131‑1 (MQ=255) cctgctgTGTAGGAGGGGCCTTCCCCAAGAGTGCTTTCGCCAAA‑ACAACATTTTTTTCTTGT‑CGGT‑CCTTTCCAAGGCCAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGc < 2:10459808/137‑1 (MQ=255) ctttGGAGGAGTGGGCTTTCCCGAGAATGCTCCCGCCCAA‑ACACCATTTTTTTTTGTT‑TGGT‑CCTCTTCGCGGAAACCCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTaa < 2:4356746/135‑1 (MQ=255) tttGTGGGATTGGGTTTGCCCGAGAGTGTGTCCGATCAG‑ACAACATTTTTTTTGGTT‑TGGT‑CCTCTTCGTGGGCAATCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTaaa < 2:12445488/136‑1 (MQ=255) ttgggaGGAGTGGGCTTACCTGGGAATGCGTACGATAAG‑AAAACAGTTTTTTTTGGT‑TGGG‑CTTCCTCGCGGAAAATCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTaaa < 2:12299640/132‑1 (MQ=255) ctggggggAGTGGGCTGGCCAGAGAATGCGTCAGAAAAG‑AAAACAGTTTTGTTTGGT‑TGGT‑CCTCTTCGGGGGCAATCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTaaa < 2:16489868/131‑1 (MQ=255) ctgggaGGAGCGGGCTTCCCAGCAAGGACGTCAAACAAG‑AAAACAATTTTTTCTGGT‑TGGG‑CCTTTTTGCGGGAAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTaaa < 2:18732253/132‑1 (MQ=255) ctTTTAGGAGTGTGCTTGCCCGCAGGTTCTCCTGCTCAG‑ACAACAGTTTTGTTTGGT‑CGTT‑CCTCTTCGCGGGCAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTaaa < 2:18617813/137‑1 (MQ=255) ctTGGAGGGGGGGGTTGGCCCGTGAGTGTGTACGACAAG‑AAAACACTTTTGTTTGGT‑CGGG‑CTTTTCCGCGGACAATCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTaaa < 2:15199776/137‑1 (MQ=255) ctTGGAGGAGCGTTCTTGCCCTCGACTGCTCCCAGCCGG‑ACAACGTTTTTTTTTGTT‑TGTT‑CCTCTTTGCGGGCACCCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTaaa < 1:1618572/137‑1 (MQ=255) gTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCTCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATgg < 1:2818013/137‑1 (MQ=255) ggggAGCGGGTTTACCCGCGAATGTGCCCGACCAA‑ACAACATTTTTTTTTGGT‑TGGT‑CCTCTTCGCGGAAAATCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGc < 2:15770629/135‑1 (MQ=255) ggggAGCGGGCTTGCCCGTGGGTACTTCAGATCAG‑AAAACGCTTTTGT‑TGGTGTGGT‑CCTTTTCGTGGGCACCCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGc < 2:3348951/135‑1 (MQ=255) gaggaggGGGCTTACCCGGGAGTGCTTCCAGTAAG‑AAAAAACTTTGGTTTGGT‑TGGT‑CCTTTCCGCGGACAATCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGc < 2:8143715/136‑1 (MQ=255) gggAGTGGGTTTCCCCGAGAGTGCGTCCGATCAA‑AAAACACTTTTGTCTGGT‑CGGT‑CTCTTTCGCGGACAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa < 2:16994526/136‑1 (MQ=255) gggAGCGGTCTTTCCGGCAAGTGTGTCAGATAAG‑ACAACAGTTTTTTTGGTT‑TGGT‑CCTTTTCGTGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa < 2:11089015/136‑1 (MQ=255) aGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGAGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa < 1:3531225/137‑1 (MQ=255) gggggTTTGCCCGCGAGTGCGTCAGATCGA‑ACAACAGTTTTTTTTGGT‑TGGT‑CCTTTTCGGGGACAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCAt < 2:234076/135‑1 (MQ=255) gCGGGTTTTCCCGAGAATGCGTCCGA‑CAGTAAAACATTTTTTTTTGGT‑TGGG‑CCTCTTCGTGGACAATCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCAt < 2:9190507/137‑1 (MQ=255) tgCTTTCCCGTGACTTCTTCCGCTCAC‑ACAACATTTTTTTTTGTT‑TGTC‑CCTCTTCGATGCCACCCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGt < 1:8993422/136‑1 (MQ=255) gCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAACTTTTTCTGGT‑CGGG‑CCTCTTCTCGGGCAAGACCACTCCTCCAAAGGGTTTTTGCATGGTATTACTGATTTGCCCTTTTTCGTGGCGTAAACGGCAACATAGTc > 2:14590159/1‑137 (MQ=255) gaaaaTGCGTCCGATCAG‑ACAACAGTTTTTTTTGTT‑TGGT‑CCTCTTCGGGGGCAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTg < 2:13537921/134‑1 (MQ=255) aTGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAg > 1:7672357/1‑137 (MQ=255) aTGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAg > 2:729573/1‑137 (MQ=255) aTGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAg > 1:15795619/1‑137 (MQ=255) tGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCCAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGAAAGa > 1:4439984/1‑137 (MQ=255) tGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGa > 2:15492123/1‑137 (MQ=255) tGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGa > 1:7575344/1‑137 (MQ=255) tGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGa > 1:158543/1‑137 (MQ=255) tGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGa > 2:17230200/1‑137 (MQ=255) tGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGa > 2:17858833/1‑137 (MQ=255) tGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGa > 2:18441591/1‑137 (MQ=255) ggCGTCCGACCAG‑AAAACATTTTGTTTTGTT‑CGGG‑CTTTTTCGCGGAAAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGa < 2:4006125/136‑1 (MQ=255) ttgTCAGATCAG‑ACAGCGTTTTTGTTTGTG‑TGTT‑CTTCTCCGCGGACAATCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGaa < 2:4615561/135‑1 (MQ=255) cGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGaaa > 1:17452225/1‑137 (MQ=255) ccaataaG‑ACAACACTTTTTTCTGTT‑TGGT‑CTTCTCCGCGGCCACCCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCt < 2:10618110/131‑1 (MQ=255) ccGCTCAG‑ACACCGTTTTTTTTTGGT‑TGGT‑CTTTTTCGCGGGCAGTCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCt < 1:1432580/137‑1 (MQ=255) ccGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCt > 1:181471/1‑137 (MQ=255) cGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg > 1:10541407/1‑137 (MQ=255) cGACCAG‑ACACCACTTTTTTTTGTT‑TGGT‑CCTCTTCGCGGGCAATCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg < 2:14872021/137‑1 (MQ=255) aG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTa > 1:2459970/1‑137 (MQ=255) aG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTa > 2:6644323/1‑137 (MQ=255) acaacaGTTTGTTCTGTT‑CGGT‑CCTCTTCGCGGACAATCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTaaa < 2:18692243/137‑1 (MQ=255) aaaacagTTTTGTTTGTT‑GGGT‑CTTCTTCGCGGGCAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTaaa < 2:18797766/135‑1 (MQ=255) caacaaTTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAAc > 1:7443857/1‑137 (MQ=255) caacaaTTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAAc > 1:6133705/1‑137 (MQ=255) acaaTTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTCCAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATAGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGt > 1:4408698/1‑137 (MQ=255) acaaTTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGt > 1:4408651/1‑137 (MQ=255) acaaTTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGt > 1:4408652/1‑137 (MQ=255) acaaTTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGt > 1:5615756/1‑137 (MQ=255) acaaTTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGt > 1:5921500/1‑137 (MQ=255) acaaTTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTAGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGt > 1:5921471/1‑137 (MQ=255) gtttttGTTTGGT‑TGGT‑CCCTTTCGAGGACAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTaa < 1:12813914/135‑1 (MQ=255) agttttttCTGTT‑CGTT‑CCTCTCCTCGGGCAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTaa < 1:13762740/135‑1 (MQ=255) ttttGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGt > 2:3940196/1‑137 (MQ=255) tttGTCTGTT‑TGGT‑CCTCTTCGCGGACAACCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGtt < 2:17680116/137‑1 (MQ=255) tttGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGtt > 2:18219252/1‑137 (MQ=255) tGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTc > 2:4536263/1‑137 (MQ=255) ttCTGTT‑CGGT‑CCTTTTCGCGGACAATCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCa < 2:4968141/136‑1 (MQ=255) cTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGc > 2:13338980/1‑80 (MQ=255) cTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGc < 1:13338980/80‑1 (MQ=255) cTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa > 2:5792235/1‑137 (MQ=255) cTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa > 2:14469414/1‑137 (MQ=255) cTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa > 2:14469458/1‑137 (MQ=255) cTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa > 2:2248334/1‑137 (MQ=255) cTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa > 1:18803064/1‑137 (MQ=255) cTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa > 1:17016810/1‑137 (MQ=255) cTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCaaa > 1:17016769/1‑137 (MQ=255) | CGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAG‑ACAACAATTTTGTCTGGT‑CGGG‑CCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAA > AE015451_phaM1/444976‑445248 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |