| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AE015451_phaM1 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 CDS (Monooxygenase_ DszC family) ← / ← sctC CDS (sulfur compound ABC transporter ‑ ATP‑binding subunit) | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451_phaM1 | 278,742 | 1 | . | A | 94.8% | 1846.4 / 85.7 | 550 | intergenic (‑237/+77) | PP_0224 CDS (Monooxygenase_ DszC family)/sctC CDS (sulfur compound ABC transporter ‑ ATP‑binding subunit) | –/– |
| Reads supporting (aligned to +/- strand): ref base . (6/22); new base A (251/259); total (269/281) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.62e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 662 total aligned reads displayed.
GCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTC > AE015451_phaM1/278606‑278872 | tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aa < 1:8398831/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aa < 1:9766472/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aa < 1:10954085/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aa < 1:5825708/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aa < 2:7778655/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aa < 1:4793847/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aa < 2:13974292/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aa < 2:14421409/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aa < 2:223413/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aa < 2:3318460/137‑1 (MQ=255) gATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aaa < 2:3625360/137‑2 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTTCGGTACATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTACCGGGCTCTTCGC‑GGG‑T‑aaac < 2:11406458/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aaac < 1:10205277/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aaac < 2:10784078/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aaac < 2:11625805/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aaac < 2:16348108/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aaac < 2:5205673/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aaac < 1:11323664/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aaac < 1:13174138/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aaac < 1:13465929/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTAGAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aaac < 1:389804/137‑3 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑aaacccg > 2:1513403/1‑132 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑AA‑acccg > 1:878354/1‑135 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCAC‑GGG‑T‑aaaccca > 2:9548711/1‑132 (MQ=255) aCGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTac < 1:10045251/137‑1 (MQ=255) gtgtGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTacac < 1:6897276/137‑1 (MQ=255) gtgtGCTGGTCCGGTGGTCCGGTATANATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTacac < 1:16671447/137‑1 (MQ=255) tgtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTacaca < 2:7587523/137‑1 (MQ=255) tgtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTacaca < 1:5179885/137‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGc < 2:7288613/137‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGc < 1:1629685/137‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGc < 1:5588927/137‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGc > 1:1464984/1‑137 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGc < 2:6683326/137‑1 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCt < 2:9151557/137‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTCTGAACTAACTTTTTGGAATATTTATAGAAGGGGGGTTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGGCA‑AA‑CCCGCTCCTACACACATGCCTCaa > 2:2785838/1‑137 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa > 1:9026887/1‑137 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa < 2:9687885/137‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa < 2:4523982/137‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa < 2:12370284/137‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa > 2:6902793/1‑137 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa > 2:15661209/1‑137 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa < 1:8537448/137‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa > 1:7555406/1‑137 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt < 1:7824427/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt < 1:10418538/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt < 1:10699488/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt < 2:6341884/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt < 1:15661209/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt < 1:2706589/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt < 2:14981287/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTAGGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCt < 2:15815176/137‑1 (MQ=255) ggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGc < 1:6477953/137‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGGACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGATGTGCTGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACAGGCCTCAAGATCTGTGCACTGTa < 2:3094174/137‑1 (MQ=39) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGATGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 2:1021844/137‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 1:7697725/137‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 1:4583754/137‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATAGTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTGCGC‑GGG‑TAAA‑CCCGCGCCTACACACATGCCTCAAGATCTGTGCACTGTa < 2:14060009/137‑1 (MQ=255) taCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAgg < 1:12731414/137‑1 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTacac > 2:13425069/1‑103 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACACGCCTCAAGATCTGTGCACTGTAGGAGCggg > 2:46844/1‑137 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCACTCCTACACACATGCCTCAAGATTTGTGCACTGTAGGAGAggg > 1:3041319/1‑137 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCAGGt > 1:16469348/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGttt > 2:5710138/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGttt > 1:1980468/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCCTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGAGGGttt > 2:16729967/1‑137 (MQ=255) aTTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTa > 2:10979690/1‑137 (MQ=255) taAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgc > 2:13202261/1‑137 (MQ=255) aaaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TGAA‑CCCACTCCTCCACACACGCCTCAAAAGCTGTGCACCGTAAGAGAGGGTTTCCCcacg > 1:4223570/1‑137 (MQ=255) aaaaTTTTTAGGAGTTAGTTTTTGGGAATCTTTGCAGAGGGGGGGTTTGTGACGGAGGTGCTGGGCTCTTTGG‑GGGAA‑AA‑CCCTCTCCCAAACCCAGCCCGCAAGCTCTGTGCCTTGTAGGAGCGGGTTTACCcgcg < 2:11541790/137‑1 (MQ=255) aaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGTACTGTAGGAGCGGGTTTCCCCGCGa > 1:14068758/1‑137 (MQ=255) tATGAACTAATTTTTTGGAAGATTTGTAGAGGGGGGATTTGTTACGGGGGTGCCGGGCTTTTTGCGGGG‑A‑AA‑CCCGCTCCGACACACATGCCTCAAGATCTGTGCACTTTGGGAGTGGGTTTACCCGCGAAAGGGcc < 1:15075668/137‑1 (MQ=255) tATGAACTAACTTTTTGGAATATTTAGAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGcc < 2:15982230/137‑1 (MQ=255) agaaactaactTTTTGGAATATTGAGAGAAGGGGGATTTGTTACAGAGTTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACGTGCCTCAAGCTCTGTGCATTGGAGGAGTGGGTTTACCCGCGAAAGGGCCg < 1:11643638/134‑1 (MQ=255) tGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTCCACACATGCCTCAAGATTTGTGCACTGTAGGGGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTc > 1:11404335/1‑137 (MQ=39) tatTTATAGAAGGGGAATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCACTCCTACACACATTCCTCAAGACCTGTGCATTGGAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAgg < 2:8480919/137‑1 (MQ=38) tttATAGAGGGGGGGTTTGTTAAAGAGGTGCCGGGCTCTTTGC‑GGG‑TAAA‑CCCTCTCCTACACACATCCCTCAAGATCTGTGCACTGGAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc < 1:11987453/137‑1 (MQ=38) ttgataGAAGGGGGATTTGTTACAGAGGTTCTGGGCTCTTTGC‑GGG‑T‑AACCCCGCTCCTCCACACATGCCTCAAGATCTGTACACTGGAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc < 1:2111622/134‑1 (MQ=38) tataGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGc > 2:14263283/1‑137 (MQ=255) gggggATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTATAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAATCCCg > 1:3319240/1‑137 (MQ=255) aTTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTCCCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGaa > 2:868966/1‑137 (MQ=255) ttGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTCCACACATGCCTCAAGGTCTGTGCACTGTAGGAGCGGGTTTACCCGCAAAAGGGCCGGGACAGGTTTCCTCGGAGGCCGCAGTCCCGAGGAACt > 1:12368898/1‑137 (MQ=38) ggTGCCGGGCTCTTCGC‑GGG‑TAAA‑CCCACTCCTCCACACATGCCTCAAAATCTGTGCACCGTAGGAGCGGGTTTACCCACGAAAGGGCCGGAACAGGTTTCCTCGGAGGCCGCAGTCCCGAGGAACTTTCGCAAGaa > 1:713616/1‑137 (MQ=38) ccGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACCTGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGAGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGc > 2:241056/1‑137 (MQ=255) ccGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTCCTCGGAGGCCGCAGTCCCGAGGAACTTGTGCAAGAACTGc > 2:12944885/1‑137 (MQ=255) ccGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGc > 2:10501860/1‑137 (MQ=255) ccGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGc > 2:11913672/1‑137 (MQ=255) ccGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGc > 2:824798/1‑137 (MQ=255) cGGGCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATTTGTGCACTGTAGGAGTGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGcc < 1:16175949/137‑1 (MQ=255) gggCTTTTCGTGGGG‑A‑AA‑CCCGCCCCTACACACATGCCTCAAGATCTTTGCATTGTAGGAGTGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcg < 1:2540044/137‑1 (MQ=255) gggCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcg < 2:5365750/137‑1 (MQ=255) gggCCCTTCGC‑GGG‑TAAA‑CCCGCTTCTACACCCATGCCTCAAGATATGTGCACTGTAGGAGCGGTTTTCCCCGCGAAAGGGCCGGAACA‑GTTTACTCGGAGGCCGCAGTCCCGAGGAACTGGCGCAAGGACTGCcgc < 2:14629683/137‑1 (MQ=255) ggCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTCCACACATGCCTCAAGATCTGTGCAATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTCCTCTGAGGCCGCAGTCCCAAGGAACTTTCGCAAAAACTGccac > 1:527624/1‑135 (MQ=37) ggCTCTTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAGCCGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGACCTGCcgc > 2:15287053/1‑137 (MQ=39) ctTCGCGGGG‑A‑AA‑CCTGCTCCTACACACATCCCTCAAGATCTGTGCATTGTGGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTAc < 2:4259882/137‑1 (MQ=38) ctTCGC‑GGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATTTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTAc < 2:1248778/137‑1 (MQ=255) ctTCGC‑GGG‑GAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTAc < 2:5060283/137‑1 (MQ=255) cgc‑gGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGTCCTTTAGGGGCGGGTTTCCCCGCGAAAGGGCCGGAACAGGTTTCCTCGGAGGCCGCAGTCCCAAGGAACTTTCGCCAGAACCGCCCCGTCCGct > 1:9285280/1‑137 (MQ=255) cgc‑gGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGGACTTGCGCAAGAACTGCCGCGTACGct > 2:4805555/1‑137 (MQ=255) gc‑gGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTCCTCGGAGGCCGCAGTCCCGAGGAACTTGCGCACGAACTGCCGCGTACGctc > 2:1945794/1‑137 (MQ=255) | GCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTC > AE015451_phaM1/278606‑278872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |