Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AE015451_phaM14,467,6460AG27.7% 1283.2 / 100.0 664intergenic (+27/‑110)nhaA‑II CDS (Na(+)_H(+) antiporter NhaA 2)/PP_3959 CDS (Voltage‑gated chloride channel family protein)–/–
Reads supporting (aligned to +/- strand):  ref base A (289/191);  new base G (0/184);  total (289/375)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 668 total aligned reads displayed.

AACTCGGTGTGCTATCCGCGTCGTTGATCGCAGCCGTGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTCCGACCCTACCCGACCTGCACCT  >  AE015451_phaM1/4467510‑4467782
                                                                                                                                        |                                                                                                                                         
aaCTCGGTGTGCTATCCGCGTCGTTGATCGCAGCCGTGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCa                                                                                                                                           >  2:15068228/1‑137 (MQ=255)
     ggTGTGCTATCCGCGTCGTTGATCGCAGCCGTGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTgg                                                                                                                                     <  2:16010/137‑1 (MQ=255)
      gtgtGCTATCCGCGTCGTTGATCGCAGCCGTGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTggg                                                                                                                                    <  1:14125692/137‑1 (MQ=255)
       tgtgCTATCCGCGTCGTTGATCGCAGCCGTGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGc                                                                                                                                   <  2:14480196/137‑1 (MQ=255)
                    tcgtTGATCGCAGCCGTGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCa                                                                                                                      >  2:10041525/1‑137 (MQ=255)
                    tcgtTGATCGCAGCCGTGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCa                                                                                                                      >  2:2466353/1‑137 (MQ=255)
                      gtTGATCGCAGCCGTGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACt                                                                                                                    >  1:4840524/1‑137 (MQ=255)
                      gtTGATCGCAGCCGTGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCATTGCA‑GTTGGGCAAGCGGATCGCCACt                                                                                                                    >  2:16518380/1‑137 (MQ=255)
                        tGATCGCAGCCGTGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTcc                                                                                                                  >  2:7329547/1‑137 (MQ=255)
                         gATCGCAGCCGTGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCG‑GTTGGGCAAGCGGATCCCCACTccc                                                                                                                 <  2:850604/137‑1 (MQ=255)
                          cccGCAGCCGTGCTGGGGTTGACCTGGGGGGTTTGGAGCATGCGCAGCGCAGCGTTTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCTGGACTGGTGATCCTTTGCG‑GTTGGGCAAGTGGATCTCCACTCCCg                                                                                                                <  2:5684239/135‑1 (MQ=255)
                          aTCGCAGCCTTGCTGGGGTTGCCCTGTGGGGTTTGGAGCATGCGCGGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGAAAGCGGATCGCCACTCCCg                                                                                                                <  2:9554085/137‑1 (MQ=255)
                          aTCGCAGCCGTGTTGGGGTTGACCTGGGGGGTGTGGAGCATGCGAAGCGCGGCGTCTACTACAAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGACCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCg                                                                                                                <  2:9156874/137‑1 (MQ=255)
                          aTCGCAGCCGTGCTGGGGTTGCCCTGGGGGGTGTGAACCATAAGCGGCGCAGCGTCTGTTACAAAAGCCGGTTCGCCCACCTATCCACTTCCAGCCTGCCGACCCCTTGCA‑GTTGTTCAAGCTGATCTCCACTCCCg                                                                                                                <  2:9363986/137‑1 (MQ=255)
                               aGCCGTGTTGGGGTTAACTGGGGGGGTGGGGAGCATAAACAGCGAAGTGTTTGCAAAAAAAGCTGGTTCGCCCACCGAACCAATTCCGGATTGGCGATCCCTGGAG‑GTGGGGAAAGTGGATCGCCACTCCCGGTGCg                                                                                                           <  2:5512681/137‑1 (MQ=255)
                                    tGCTTGGTTTGACTTGGGGGGTGTGGAGCATGCGAAGCGCAGCGTCTACTACCAAAACCGGTTCGCCAACCTAGCCAATTCCGGACTGGCGATCCCTTGCG‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTAc                                                                                                      <  2:14913770/137‑1 (MQ=255)
                                    tGCTGGGGTTGACTTGGGGGGTGTGGAGCATGCGAAGAGAGGCGTCTGCTACCAAAGCCGGTTCACCCACCGAGCCAATCCCGGACTGACAATCCCTTCCA‑GTTGGGCAAGCGGATCACCACTCCCGGTGCGGCTAc                                                                                                      <  2:8890068/137‑1 (MQ=255)
                                    tGCTGGGGTTGACTGTGGGGGTTTGGAGCAGGCTCAGCGAGGCGCCTGCGACCAAAGCCGGTTCGCCCACCGAACCAATTCTGGACGGTCGATCCCTTGCG‑GTTGGGAAAGTGGATCGCCACTCCCGGTGCGGCTAc                                                                                                      <  1:8127331/137‑1 (MQ=255)
                                    tGCTGGGGTTGACCTGGGGGGTGTGGAGCGTGCACAGCGAAGTGTCTGCGACCAAAGCCGGTTCGCCCACTTGGCCAAGTCCGGACGGGCAATCCCTTGCG‑GTTGGGCAAGCGGGTCGCCACTCCCGGTGCGGCTAc                                                                                                      <  2:8284903/137‑1 (MQ=255)
                                    tGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTAc                                                                                                      >  2:3119156/1‑137 (MQ=255)
                                    tGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTAc                                                                                                      >  1:8260583/1‑137 (MQ=255)
                                       tGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAAc                                                                                                   >  2:7617054/1‑137 (MQ=255)
                                       tGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAAc                                                                                                   >  1:1791972/1‑137 (MQ=255)
                                         ggtttGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCTTTTGCTACCAAAGCCGGTTCGCCCACCTATCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCt                                                                                                 <  2:13719039/134‑1 (MQ=255)
                                         gggTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACAAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCt                                                                                                 <  2:11990311/137‑1 (MQ=255)
                                         gggTTGACCTGGGGGGTGGGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCTGGTTCGCCCACCTAGCCAGTTCTGGACTGGCGATCCTTTGCG‑TTTGGGCAAGCGGATCCCCACTCCCGGTGCGGCTACAACCt                                                                                                 <  2:392786/137‑1 (MQ=255)
                                         gggTTGACCTGGGGGGGGTGGAGCATGCGCAGCACAGCGTCTGCTACCAAAGCCGGTTCGCCCACCCAGCCAATCCCGGATTGGAGATCCCTTGCG‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCt                                                                                                 <  1:10671433/137‑1 (MQ=255)
                                         gggTTGACCGGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAATCCGTTTCGCCCACCTAACCAATCCCGGACGGGCGACCCCTTGCA‑GTGGGACAAGCGGATCACCACTCCCGGTGCGGCTACAACCt                                                                                                 <  2:9824268/137‑1 (MQ=255)
                                         gggTGGACCTGGGGGGTTTGGAGCAGGCGCAGCGCAGCGTCGGCTACAAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGAGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCt                                                                                                 <  2:15303570/137‑1 (MQ=255)
                                            ttGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCtgtg                                                                                              >  1:16082767/1‑137 (MQ=255)
                                              gattgggggggTGTGGAGCATGCGAAGCGCATCGTCTACCACAAAAGCTGGTTCTCCCACCTATCCACTTCTGGATGGGCGA‑CCCTTGGAGGTTGGGAAAGCGGCTCCCCACTCCCGGTGCGGCTACAACCTGTGTc                                                                                            <  1:5453503/132‑1 (MQ=255)
                                              gACTTGGGGGGTGGGGAGCATGAGCAGCGCAGCGTTTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACGGGCGATCCCTGGCG‑GTTGGGAAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTc                                                                                            <  2:6209319/137‑1 (MQ=255)
                                              gACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTc                                                                                            >  2:5881603/1‑137 (MQ=255)
                                                ccTGGGGGGTGTGGAGCGTGCGCAGCGCGGTGTCTGCTACAAAAGCAGGTCCACCCACCTAGCCACTTCCGGACTGACGACCCCTTGCA‑TTTGGGCAAGCGGATCACCACTCCCGGTGCGGCTACAACCTGTGTCgg                                                                                          <  1:9478517/137‑1 (MQ=255)
                                                   ggtgggTGTGGAGCAGGCGCAGCGAAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCACTTCCGGACTGGCGATCCCTTGCA‑TTTGGGCAAGCGGGTCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTa                                                                                       <  2:12347001/134‑1 (MQ=255)
                                                   ggggggTGTGGAGCATGCGAAGCGCAGCGTCTGCTACCAAAGCCGGTTCCCCCACCGAGCCAATCCGGGACGGGCGATCCCTTGCA‑TTTGGGCAAGCGGATCACCACTCCCGGTGCGGCTACAACCTGTGTCGGGTa                                                                                       <  2:2152149/137‑1 (MQ=255)
                                                   ggggggTGTGGAGCAGGCGCAGCGCAGCGTCTGCGACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGGTCCCTTGCG‑GTGGGGCAAGCGGATCTCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTa                                                                                       <  1:13878454/137‑1 (MQ=255)
                                                       ggTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGcc                                                                                   >  1:3865678/1‑137 (MQ=255)
                                                        gtgtGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGTTGCGGCTACAACCTGTGTCGGGTAGGCCt                                                                                  >  2:675449/1‑137 (MQ=255)
                                                        gtgtGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCt                                                                                  >  1:13362481/1‑137 (MQ=255)
                                                            ggAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGc                                                                              >  1:13536264/1‑137 (MQ=255)
                                                            ggAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGc                                                                              >  2:659571/1‑137 (MQ=255)
                                                                 aTGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGaa                                                                         >  1:15851724/1‑137 (MQ=255)
                                                                 aTGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGaa                                                                         >  2:3470430/1‑137 (MQ=255)
                                                                 aTGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGaa                                                                         >  2:11742524/1‑137 (MQ=255)
                                                                  tGCGCAGCGCAGCGTCTGCTACCAAAGCTGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGaaa                                                                        <  2:10659820/137‑1 (MQ=255)
                                                                     gcagcgcagcGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAaca                                                                     >  2:6362126/1‑137 (MQ=255)
                                                                     gcagcgcagcGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAaca                                                                     >  2:13142101/1‑137 (MQ=255)
                                                                     gcagcgcagcGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAaca                                                                     >  2:7021855/1‑137 (MQ=255)
                                                                     gcagcgcagcGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAaca                                                                     >  1:429079/1‑137 (MQ=255)
                                                                     gcagcgcagcGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAaca                                                                     >  2:8092320/1‑137 (MQ=255)
                                                                     gaagcgaagcgTCTGCTACCAAATCCGGTTCCCCCACCTATCCACTTCCGGACTGGCAATCCCTTGCG‑GTTGGGCAAGTGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAaca                                                                     <  1:16335990/135‑1 (MQ=255)
                                                                      cagcgcagcgTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCTTTGCG‑GTGGGGAAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAacac                                                                    <  2:189326/137‑1 (MQ=255)
                                                                      cagcgcagcgTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAacac                                                                    >  1:15528278/1‑137 (MQ=255)
                                                                      cagcgcagcgTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGAACTGGCGATCCCTTGCA‑GTGGGGCAAGCAGATCGCCACTCCCGGTGCGGCTACAACCTACGTCGGGTAGGCCTGTGCGGGAAAacac                                                                    <  2:16283203/137‑1 (MQ=255)
                                                                      cagcgcaatgTCTGCTACCAAATCTGGTTCGCCCACCTATCCAATTCCGGACTTGCGATCCTTTGCG‑TTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAacac                                                                    <  1:12531542/137‑1 (MQ=255)
                                                                          gcagcgTCTGCTACCAAAGCCGGTCCGCCCACCTAGCCAACTCCGGACTGGCGATCCCTTGCA‑ATTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAAACCGTGTCGGGTAGGCATGTGCAGGAAAACACGcaa                                                                >  2:504118/1‑135 (MQ=255)
                                                                          gcagcgTCTGCTAACAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCATGTGCGGGAAAACACGCCa                                                                >  1:7260029/1‑137 (MQ=255)
                                                                           cagcgTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCAt                                                               >  2:14560795/1‑137 (MQ=255)
                                                                            agcgTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATa                                                              >  1:9057076/1‑137 (MQ=255)
                                                                                tCTGCTACCAAATCCGTTTCTCCCACCTAGCCGGTTCCGGACTGGCGATCCTTTGCG‑GTTGGGAAAGTGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCa                                                          <  1:2110559/137‑1 (MQ=255)
                                                                                tCTGCTACCAAAGCTGGTCCGCCCACTTATCCAATTCCGGACTGGCAATCCCTTTCA‑GTTGGACAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCa                                                          <  1:1991092/137‑1 (MQ=255)
                                                                                tCTGCTACCAAAGCCGTTTCTCCCACCGAGCCAATTCCGGATTGGCGATCCTTTGCG‑GTTGGGAAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCa                                                          <  1:11659348/137‑1 (MQ=255)
                                                                                tCTGCTACAAAAGCTGGTTCGCCCACCTAGCCAGTTCCGGATGGTCGATCCCTTGCG‑GTGGGGAAAGCGGATCCCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCa                                                          <  1:6190639/137‑1 (MQ=255)
                                                                                tCTGCTACAAAAGCCGGTTCGCCCACCGAGCCAATTCCGGACTGGCGATCCTTTGCG‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCa                                                          <  2:5307493/137‑1 (MQ=255)
                                                                                   gCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACgg                                                       >  1:12218607/1‑137 (MQ=255)
                                                                                      aCCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCtt                                                    >  2:4103089/1‑137 (MQ=255)
                                                                                      aCCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCtt                                                    >  1:2665732/1‑137 (MQ=255)
                                                                                      aCCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCtt                                                    >  2:10433588/1‑137 (MQ=255)
                                                                                       caaaaGCTGTTTCGCCCACCGAACCACTTCTGGATTGGCGATCCTTTGCG‑GTGGGAAAAGCGGATCCCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCttt                                                   <  1:3710236/135‑1 (MQ=255)
                                                                                           aGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCaa                                               >  1:8490577/1‑137 (MQ=255)
                                                                                              tggTTCGCCCACCTAGCAAATTCTGGATTGGCGATCCCTTGCA‑TTGGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTc                                            <  2:11184260/136‑1 (MQ=255)
                                                                                               ggTTCTCCAACCGATCCAGTTCTGGACTGGCGACCCCTTGTA‑GTGGGGCAAGTGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCa                                           <  1:2409885/137‑1 (MQ=255)
                                                                                                 ttCGCCCACCTAGCCAATTCCGGATTGGCGATCCCTTGCG‑GTGGGGAAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGc                                         <  2:2665732/137‑1 (MQ=255)
                                                                                                 ttCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGc                                         >  1:1040065/1‑137 (MQ=255)
                                                                                                   cGCCCACCTAGCCAATTCCGGATTGGCGATCCCTTGCG‑GTTGGGCAAGTGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCa                                       <  1:10034837/137‑1 (MQ=255)
                                                                                                    gCCCACCTAGCCAATTCCGGACTGGCGATCCTTTGCG‑GTGGGGCAGGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCAt                                      <  1:12044163/137‑1 (MQ=255)
                                                                                                    gCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCAt                                      >  1:1454809/1‑137 (MQ=255)
                                                                                                    gCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCAt                                      >  2:12672528/1‑137 (MQ=255)
                                                                                                          tgaGCCAATTCCGGATTGGCGATCCTTTGTG‑GTGGGAAAAGCGGATCCCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGTGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTgg                                <  1:1515881/135‑1 (MQ=255)
                                                                                                          cgaGCCAATTCCGAACTGGCGATCCCTTGCG‑TTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTgg                                <  2:15773928/135‑1 (MQ=255)
                                                                                                          cTAGCCACTTCTGGATGGGCGATCCCTGGTG‑GTTGGGAAAGCGGATCACCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTgg                                <  1:7131198/137‑1 (MQ=255)
                                                                                                          cTAGCCACTTCCGGACTGGCGATCCCTTGCG‑GTGGGGCAAGCGGCTCCCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTgg                                <  1:10846335/137‑1 (MQ=255)
                                                                                                          cTAGCCAATTCCGGATGGGAGATCCCTGGTA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTgg                                <  2:475573/137‑1 (MQ=255)
                                                                                                             gCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACa                             >  1:1484411/1‑137 (MQ=255)
                                                                                                             gCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACa                             >  1:9781651/1‑137 (MQ=255)
                                                                                                               aaaTTCCGGATTGGAGATCCTTTGTG‑GTTGGGAAAGTGGATCACCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAAt                           <  2:1740794/136‑1 (MQ=255)
                                                                                                                 aTTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGt                         >  2:13351198/1‑137 (MQ=255)
                                                                                                                   tCCGGATTGGCGATCCCTTGAG‑GTTGGGCAGGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTcc                       <  1:3451590/137‑1 (MQ=255)
                                                                                                                   tCCGGACTGTCGATCCCTTGCA‑GTTGGGCAGGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTcc                       <  2:10878033/137‑1 (MQ=255)
                                                                                                                   tCCGGACTGGCGATCCTTTGCG‑GTGGGGAAAGCGGGTCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTcc                       <  1:3168199/137‑1 (MQ=255)
                                                                                                                        cttGGCAATCTCTTGTG‑GTGGGGAAAGCGGATCTCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTCCGAccc                  <  1:12852592/135‑1 (MQ=255)
                                                                                                                          tGGCGATCCTTTGCG‑GTTGGAAAAGTGGATCCCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTCCGACCCTa                <  1:16597223/137‑1 (MQ=255)
                                                                                                                          tGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTCCGACCCTa                >  2:14118590/1‑137 (MQ=255)
                                                                                                                             cGATCCTTTGCG‑GTGGGGCAAGCGGATCACCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTCCGACCCTAccc             <  2:4624339/137‑1 (MQ=255)
                                                                                                                               aTCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTCCGACCCTACCCGa           >  2:11319218/1‑137 (MQ=255)
                                                                                                                               aTCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCATGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCAATGTGTGGACAATGTCCGACCCTACCCGa           >  2:3847009/1‑137 (MQ=255)
                                                                                                                                   cTTGCG‑GTGGGGCAAGCGGATCCCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTCCGACCCTACCCGACCTg       <  1:11183275/137‑1 (MQ=255)
                                                                                                                                    ttGCA‑GTGGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTCCGACCCTACCCGACCTGc      <  2:14676226/137‑1 (MQ=255)
                                                                                                                                      gCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTCCGACCCTACCCGACCTGCAc    <  2:13867928/137‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                         
AACTCGGTGTGCTATCCGCGTCGTTGATCGCAGCCGTGCTGGGGTTGACCTGGGGGGTGTGGAGCATGCGCAGCGCAGCGTCTGCTACCAAAGCCGGTTCGCCCACCTAGCCAATTCCGGACTGGCGATCCCTTGCA‑GTTGGGCAAGCGGATCGCCACTCCCGGTGCGGCTACAACCTGTGTCGGGTAGGCCTGTGCGGGAAAACACGCCATACTCACGGCTTTCCAAGTCAGCCATGTGTGGACAATGTCCGACCCTACCCGACCTGCACCT  >  AE015451_phaM1/4467510‑4467782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑