Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AE015451_phaM14,889,6440GC27.6% 486.5 / 93.3 238intergenic (+90/‑63)hyi CDS (hydroxypyruvate isomerase)/glxR CDS (tartronate semialdehyde reductase)–/–
Reads supporting (aligned to +/- strand):  ref base G (117/27);  new base C (0/55);  total (119/119)
Fisher's exact test for biased strand distribution p-value = 6.14e-29
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 240 total aligned reads displayed.

CGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAA‑CAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCA  >  AE015451_phaM1/4889512‑4889780
                                                                                                                                     |                                                                                                                                        
    gCGGGCCTGGGCTGGCGGAAAACCCACAACGCAACCTGAGGAA‑CAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTTTGCTTCGCGGGCGAGCCCGcgaa                                                                                                                                  <  1:13851165/137‑4 (MQ=255)
                 tgctaAAAACCTACAACACACTCTGGGAAA‑CAACTCGGGACCCTGGGGGAGCGGTCTCCCCCGTGAACACCGGCAAATCCGGTACCATCCCCCGATTTGTCTCCTTCGCGGACGATCCCGCTCCCACAGGGGGCCaa                                                                                                                     <  2:15451201/136‑1 (MQ=255)
                 ggcggAAAACCCACACCAC‑GGCTTAGGAACCACCTTGGGCCCTTGTGGGAGCGGGCTCGCCCGAAAACACTGGCAAGGCGGTTGCCCCCCCCTGGGTTGTTTGCTTCGCGGGCAACCCCGCTCCCACAGGGGGCCaa                                                                                                                     <  2:8714634/137‑1 (MQ=255)
                      aaaaCCCACACCCCACTCTGAGAAC‑CACCTCGGGACCCTGTGGGAGCGGGCTCCCCTGCAAACACCGGAAAACTCGGTGCCATCCACTGGTTTTTTTGTTTCGTGGGCAACCCCGCTCCCACAGGGGGCCAAAgctt                                                                                                                <  2:7176505/137‑1 (MQ=255)
                        aaCCCACAACGCACCCGGAGAAA‑CAACTTGGGACCCTGTGGGAGCGGGCTCACCCGCGAAAACCGGCAAAACCGGTGCCACCCACCGAGTTGTCTGCTTCGCGGGCGACCCCGCTCCCACAGGGGGCCAAAgcttgc                                                                                                              <  2:7801448/137‑1 (MQ=25)
                         accaaaaaCGCACTCTGAGGAA‑CAACTTGGGACCTTGGGGGAGCGGGCTCGCCCAAGAACACAGAAAAAGCGGGTGCCACCCACTGGGTTGTTTGTTTCGAGGGCGACCCCGCTCCCACAGGGGGCCAAAgcttgct                                                                                                             <  2:5995637/131‑1 (MQ=255)
                              caACTCACTTTGGGGAA‑CAACTCGGAACCCTGGGGGAACGTTCTCCCCTGAAAACACCTACAAATCTGGTGCCCTCCACTGATTTTTCTCTTCCGTGGGCAAACCCGCTCCCACAGGGGGCCAAAGCTTGCTTgaga                                                                                                        <  2:2938140/137‑1 (MQ=255)
                                aCGCACTCGGAGGAA‑CAATTCGGGACCTGGGGGGAGCGGGTTCGCCCGAAAACACCGAAAAATCTGGTTCCCTCCACCGATTTTTCTTCTTCGCGGCCACCCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGata                                                                                                      <  1:8589007/137‑1 (MQ=255)
                                        agAGGAA‑CAACTTGGGACCCTGTGGGAGCGGGCTCACCCACAAAAACCGACAAAGCCGGTGCCATCCACTGATTTGTCTGCTTCGCGGGCAAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAAtt                                                                                              <  2:15075146/136‑1 (MQ=25)
                                          ggaaa‑caccTGGGGACCTTGGGGGAGCGGGTTCCCCCAAGAACACCGGAAAATTTGGTGCCCTCCACTGGGTTGTCTGTTTTGTGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTAc                                                                                            <  2:13587952/134‑1 (MQ=255)
                                             aa‑caacTCGGGACCCTGTGGGAGCGGGCTCGCCCGGAAACACTGGCAAGTCGGGTGCCACCCACCGGGTTTTTTGCTTCGGGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACaaa                                                                                         <  2:709974/137‑1 (MQ=25)
                                                        gACCCTTTGGGAGCGGGCTTGCCCGGGAACACCGGCAAATCCGGTGCCATCCACCGAGTTGTTGGCTTCGTGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAAttt                                                                               <  2:16498287/137‑1 (MQ=255)
                                                                    gCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCAAAAGCTTGCTTGAAATATCACAAGTACAAAGAGGTAATTTCTCATGGCTaaa                                                                   >  1:12995237/1‑137 (MQ=255)
                                                                               cgaaaaCACCGACAAAGCCGGTACCACCCACCGGTTTGTCTGCTTCGCGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCAt                                                        <  1:15605315/133‑1 (MQ=255)
                                                                                 cgAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCg                                                      >  1:10261182/1‑137 (MQ=255)
                                                                                   aaCACCGACAAGTCCGGTCCCCCCCACCGGTTTGTTGTCTCCGCGGGTGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGc                                                    <  1:2452505/137‑1 (MQ=255)
                                                                                    acacCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCa                                                   >  2:1111708/1‑137 (MQ=255)
                                                                                    acacCGGAAAAGCGGGTGCCATCCACCGAGTTGTCTGCTTTGCGGGTAGGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCa                                                   <  2:3203470/137‑1 (MQ=255)
                                                                                    aaacCGGAAAAGCTGGTGCACCCCCCCGGGTTGTCTGCTTCGTGGTCGGGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCa                                                   <  1:4029376/135‑1 (MQ=255)
                                                                                         ggaaaaGCCGGTACCGTCCACTGAGTTTTCGGTTTCGTGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGc                                              <  2:12537343/134‑1 (MQ=255)
                                                                                         ggCAAAGCTGGTGCCATCCACCGGGTTTCCGGCTTAGCGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGc                                              <  2:11409638/137‑1 (MQ=255)
                                                                                           cAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcat                                            >  2:6553789/1‑137 (MQ=255)
                                                                                             aaGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcatca                                          >  2:4071442/1‑137 (MQ=255)
                                                                                              atccGGTGCCACCCCCCGGTTTGTCTGTTGCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcatcat                                         <  2:1047090/135‑1 (MQ=255)
                                                                                               ttgggTGCCACCCACTGGGTTTTCGGCTTTACGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATg                                        <  1:14358464/134‑1 (MQ=255)
                                                                                               gCCGGTGCCACCCACCGGGTTGTCTACTCCACGGACGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATg                                        <  2:12874276/137‑1 (MQ=255)
                                                                                               cctggTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAACCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATg                                        <  2:8144905/134‑1 (MQ=255)
                                                                                                ctgttGCCCTCCACCGGGTTGTCTGTTTCGCGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATgg                                       <  2:2357560/133‑1 (MQ=255)
                                                                                                   gTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCACCGCTTGCCTGAGATATCACACTTACACAGAGGTAATTTCTCATGGCTAAAATCAGTTTCATCGGCACCGGCATCATGGGCa                                    >  1:16039177/1‑137 (MQ=255)
                                                                                                   gTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCa                                    >  1:10007016/1‑137 (MQ=255)
                                                                                                   gTGCCATCCACCGAGTTGCCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCCCAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATAGGCACCGGCATCACGGGCa                                    >  2:11045783/1‑137 (MQ=255)
                                                                                                      ccccccACCGGTTTGTTTGCTTCGCGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                                 <  1:6817499/133‑1 (MQ=255)
                                                                                                      ccccccACAGAGTTTTTTTCTTCACGGAAAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                                 <  1:8216124/133‑1 (MQ=255)
                                                                                                      ccATCCCCCGAGTTTTCTTTTTTATGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                                 <  2:13989154/137‑1 (MQ=255)
                                                                                                      ccATCCACGGGGTTGTTTGTTTTGTGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGTCACCGGCATCATGGGCAAGc                                 <  2:4704453/137‑1 (MQ=255)
                                                                                                      ccATCCACCGGGTTGTCTGCTTCGCGTGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                                 <  1:4483833/137‑1 (MQ=255)
                                                                                                      ccATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                                 <  1:15749097/137‑1 (MQ=255)
                                                                                                      ccATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                                 >  1:5686084/1‑137 (MQ=255)
                                                                                                      ccATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                                 >  1:5780461/1‑137 (MQ=255)
                                                                                                      ccATCCACCGAGTTGTCTGCTTCGCGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGCTTCATCGGCACCGGCATCATGGGCAAGc                                 <  2:8988469/137‑1 (MQ=255)
                                                                                                      ccACCCCCCGATTTTTCTGTTTCGCGGGCACCCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                                 <  1:12018715/137‑1 (MQ=255)
                                                                                                       cacccACCTATTTGTCTGTTTCGCGGTAGAACCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTGCAAAGAGGTAATTCCTCATGGCTAAAAGCGGTTTCATCGGCACCGGCATCATGGGCAAGcc                                <  2:16420759/134‑1 (MQ=255)
                                                                                                       cATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGcc                                >  2:1698414/1‑137 (MQ=255)
                                                                                                       cATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGcc                                >  1:4624798/1‑137 (MQ=255)
                                                                                                       cATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGcc                                >  1:16602711/1‑137 (MQ=255)
                                                                                                            aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                           >  2:7773884/1‑137 (MQ=255)
                                                                                                            aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                           >  1:14097478/1‑137 (MQ=255)
                                                                                                                 tttttCTGCTCCGCGGACGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      <  2:12018580/133‑1 (MQ=255)
                                                                                                                 tttgtttgtTTAGCGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      <  1:5561226/136‑1 (MQ=255)
                                                                                                                 tttGTCTGTTTCTCGGGCGCCCCCGCTCCCACAGGGGGACAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      <  1:11309719/136‑1 (MQ=255)
                                                                                                                 tttGTCTGCTTTGTGGGCAATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      <  2:9432512/136‑1 (MQ=255)
                                                                                                                 tttGTCTGCTTCGCGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      <  2:15554024/136‑1 (MQ=255)
                                                                                                                 gTTGTCTTCTTCGCGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      <  2:3399279/137‑1 (MQ=255)
                                                                                                                 gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      >  1:1961780/1‑137 (MQ=255)
                                                                                                                 gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      >  1:10933007/1‑137 (MQ=255)
                                                                                                                 gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      >  1:12012420/1‑137 (MQ=255)
                                                                                                                 gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      >  2:6100677/1‑137 (MQ=255)
                                                                                                                 gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      >  1:8161531/1‑137 (MQ=255)
                                                                                                                 gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      >  1:12975521/1‑137 (MQ=255)
                                                                                                                 gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      >  1:1324246/1‑137 (MQ=255)
                                                                                                                 gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                      >  1:2602124/1‑137 (MQ=255)
                                                                                                                   tGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGaa                    >  2:439322/1‑137 (MQ=255)
                                                                                                                      ttttttCGCGGGCAATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCt                 <  1:12642072/133‑1 (MQ=255)
                                                                                                                        gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                                 >  2:13848225/1‑119 (MQ=255)
                                                                                                                        gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc               >  1:3419524/1‑137 (MQ=255)
                                                                                                                        gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc               >  2:16000245/1‑137 (MQ=255)
                                                                                                                        gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc               >  2:14899709/1‑137 (MQ=255)
                                                                                                                        gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc               >  2:14397528/1‑137 (MQ=255)
                                                                                                                         cTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCa              >  1:6689380/1‑137 (MQ=255)
                                                                                                                           tCGGGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaa            <  1:1699914/137‑1 (MQ=255)
                                                                                                                           tCGAGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaa            <  1:14571758/137‑1 (MQ=255)
                                                                                                                            tgtgggCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  2:1916183/134‑1 (MQ=255)
                                                                                                                            ggcgGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  2:5060597/136‑1 (MQ=255)
                                                                                                                            cttgggCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  1:15247940/134‑1 (MQ=255)
                                                                                                                            ctcgGTCGAGCCCACTCCCACATGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCCTCGGTACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  2:13222235/135‑1 (MQ=255)
                                                                                                                            cgtgtgCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  1:16572337/132‑1 (MQ=255)
                                                                                                                            cgggggCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  2:10427245/134‑1 (MQ=255)
                                                                                                                            cgggggCAATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  1:15248009/134‑1 (MQ=255)
                                                                                                                            cggggacGAACCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  1:8940309/131‑1 (MQ=255)
                                                                                                                            cgcgGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  1:7867654/137‑1 (MQ=255)
                                                                                                                            cgcgGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  2:12573707/137‑1 (MQ=255)
                                                                                                                            cgcgGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAAGCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  2:3552479/137‑1 (MQ=255)
                                                                                                                            cgcgGACGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  1:11636682/137‑1 (MQ=255)
                                                                                                                            cgcgGACAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  1:5215592/137‑1 (MQ=255)
                                                                                                                            cacgaacGACCCCACTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa           <  1:12703940/131‑1 (MQ=255)
                                                                                                                             gcgGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAg          >  2:14168321/1‑137 (MQ=255)
                                                                                                                               gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc        >  2:15247296/1‑137 (MQ=255)
                                                                                                                               gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc        >  2:3474670/1‑137 (MQ=255)
                                                                                                                               gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc        >  1:9823659/1‑137 (MQ=255)
                                                                                                                               gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc        >  1:12027963/1‑137 (MQ=255)
                                                                                                                               gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc        >  1:7677232/1‑137 (MQ=255)
                                                                                                                               gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc        >  2:8038338/1‑137 (MQ=255)
                                                                                                                               gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc        >  1:9609718/1‑137 (MQ=255)
                                                                                                                               gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc        >  1:1485753/1‑137 (MQ=255)
                                                                                                                                ggCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCa       <  2:16300822/137‑1 (MQ=255)
                                                                                                                                 gtgAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAg      <  1:2221454/135‑1 (MQ=255)
                                                                                                                                 gCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCACGCCCATGGCTCAGAACCTGCAAAAGGCAg      >  2:3790012/1‑137 (MQ=255)
                                                                                                                                 gCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAg      >  2:1224954/1‑137 (MQ=255)
                                                                                                                                  ttggCCCCCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAgg     >  2:5518581/4‑137 (MQ=255)
                                                                                                                                     gCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCCCCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTca  >  2:2112247/1‑137 (MQ=255)
                                                                                                                                     |                                                                                                                                        
CGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAA‑CAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCA  >  AE015451_phaM1/4889512‑4889780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑