Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AE015451_phaM1 2,586,636 Δ39,187 bp [PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type)]–[PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)] 42 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AE015451_phaM1 2586636 2625822 39187 916 [0] [0] 958 [PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type)]–[PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)] [PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type)],PP_5507 CDS (protein of unknown function),PP_2267 CDS (putative Phage single‑stranded DNA‑binding protein),PP_2268 CDS (Phage endodeoxyribonuclease I),PP_2269 CDS (putative N‑acetylmuramoyl‑L‑alanine amidase),PP_2270 CDS (putative DNA primase_helicase protein),PP_5508 CDS (conserved protein of unknown function),PP_5509 CDS (conserved exported protein of unknown function),PP_5510 CDS (protein of unknown function),PP_2272 CDS (conserved protein of unknown function),PP_5511 CDS (protein of unknown function),PP_2273 CDS (DNA polymerase I from phage origin),PP_2274 CDS (conserved protein of unknown function),PP_2275 CDS (conserved protein of unknown function),PP_2276 CDS (putative phage exonuclease),PP_2277 CDS (conserved protein of unknown function),PP_2278 CDS (conserved protein of unknown function),PP_5512 CDS (protein of unknown function),PP_2279 CDS (Head‑to‑tail joining protein),PP_2280 CDS (conserved protein of unknown function),PP_2281 CDS (putative Capsid assembly protein),PP_5513 CDS (conserved protein of unknown function of phage origin),PP_2282 CDS (Minor capsid protein 10),PP_2283 CDS (Tail tubular protein A),PP_2284 CDS (Tail tubular protein B),PP_5514 CDS (conserved protein of unknown function),PP_2285 CDS (conserved exported protein of unknown function),PP_2286 CDS (conserved protein of unknown function),PP_2287 CDS (Phage internal core protein),PP_2288 CDS (Phage tail fiber protein),PP_2289 CDS (conserved exported protein of unknown function),PP_2290 CDS (conserved protein of unknown function),PP_2291 CDS (conserved protein of unknown function),PP_2292 CDS (conserved protein of unknown function),PP_2293 CDS (DNA maturase B),PP_2294 CDS (conserved exported protein of unknown function),PP_5515 CDS (protein of unknown function),PP_5516 CDS (protein of unknown function),PP_5517 CDS (conserved exported protein of unknown function),PP_2295 CDS (putative antirestriction protein),PP_2296 CDS (conserved protein of unknown function),[PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451_phaM1 = 25866350 (0.000)915 (1.160) 138/270 0.1 100% intergenic (+541/‑1) PP_t39 tRNA (tRNA‑Leu)/PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type) –/–
?AE015451_phaM1 2625823 = 0 (0.000)intergenic (+1/‑299) PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)/PP_t40 tRNA (tRNA‑His) –/–