Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AE015451_phaM14,889,6440GC33.5% 369.4 / 111.2 215intergenic (+90/‑63)hyi CDS (hydroxypyruvate isomerase)/glxR CDS (tartronate semialdehyde reductase)–/–
Reads supporting (aligned to +/- strand):  ref base G (100/23);  new base C (0/62);  total (101/114)
Fisher's exact test for biased strand distribution p-value = 3.21e-30
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 215 total aligned reads displayed.

CGGGCCTGGGCTGGCTGAAAACCC‑ACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGG  >  AE015451_phaM1/4889517‑4889777
                                                                                                                                 |                                                                                                                                     
     cTGGGCTGGCTGAAAACCC‑ACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGGTTGGCCTCTAACCCCGGCCCAACCGGTTCCC‑CCCCCCCAGTTTTCTTCTTCTTTGGTGAGTCCCCTCCcccaag                                                                                                                         >  1:16277619/1‑135 (MQ=255)
     cTGGGCTGGCTGAAAACCC‑ACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACCCCAGCAAAGACCGTGCCC‑CCCACCAAGGTGTCTGCTTTGCGGGGGAGGCCGATCCcaacag                                                                                                                         >  2:4249968/1‑133 (MQ=25)
            ggcgaaaacCCC‑ACAACGCAACTGGAGAAACAACTCGGGACTTTGTGGGGGTGGGTTTGCCCGCAAACACCGGCAAGTCTGGTGCCA‑TCCATTGGTTTTTCTGTTTTGTGGGCGACCCCGCTCCCACAGGGGGCCaa                                                                                                                  <  2:10458619/132‑1 (MQ=255)
             ggttaaaaCCCAACAACGCACTCTGGGGAACACCTCGGGACCTTTTGGGAGTGGTCTCTCCCGCAAACACCGGCAACACTGTTCCCA‑CCCCCCGGGTTTTCTCCTCCGTGGCCGCCCCCGCTCCCACAGGGGGCCaa                                                                                                                  <  2:5092780/133‑1 (MQ=255)
                 aaacCCC‑AAAACACACTTGGAGAAACAATGGGGGACCTTGTGGGAGGGGGCTCGCCCGAGAACACTGGAAAAGCTGGTGCCC‑TCCACGGGTTTGTTTTTTTCGGGGGCGACCCCGCTCCCACAGGGGGCCAAAgctt                                                                                                             <  2:6349096/137‑1 (MQ=255)
                          caACGCAATCGGAGGAACACCTTGGGACCTTGTGGGGGTGGGCTCGCCCGAGAAAACGGGAAAAGTTGGTGCCA‑TCCACGGATTTTTCTGTTTCGCGGACGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgaga                                                                                                     <  2:16553586/137‑1 (MQ=255)
                          caACACACTCTGAAGAACACCTGGGGCCCTTGTGGGAGCGGGTTTGCCCGCGAACACCGACAACGCCGGTGCCC‑TCCACCGGTTTGTCTTCTTCGGGGACAATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgaga                                                                                                     <  2:10547311/137‑1 (MQ=19)
                          caACACAATCTGGGAAACAACTTGGACCCTTGGGGGAGCGGGCTCGCCCGAGAACACCGGC‑AAGTCGGTTTCACTCCACCGGTTTCTTTTTTTCGCGGCCGGTCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgaga                                                                                                     <  2:2249786/137‑1 (MQ=255)
                          aagcacAATTTGAGGAACACCTCGGGACCCTTTGGGGGCGGTTTCTCCCGAGAACACCGGCAAAGCCGGTGCCA‑TCCACTGGGTTTTCTGTTTCGTGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgaga                                                                                                     <  2:4109790/132‑1 (MQ=25)
                          aaaCGCAATCGGAGAAACAACTCGGGACCCTGTGGGAGCGTGCTCGCCCGCAAACACCGACAAAGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGTGGACGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgaga                                                                                                     <  2:15383593/136‑1 (MQ=37)
                            ccGCACTCGGAGAAACACTTTGGGACCTTGGGGGAGCGGGTTCCCCCGAAAAAACGGAAAAAGCTGTTGCCG‑TCCACGGGGTTTTTTTTTTCGTGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGata                                                                                                   <  2:15594386/136‑1 (MQ=255)
                            aCGAAATCGGAGAAAAAACTTGGGACCTTGGGGGAGTGGGCTTTCCGGGAAAAACTGGAAAGGCTGGTGCCA‑TCCACTGGGTGGTTTTTTTCGCGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGata                                                                                                   <  2:18033764/137‑1 (MQ=255)
                                      agaaacaacTGGGGACCTTGGGGGGGAGGGCTCGCCCGCGAACACCGGCAAAGCTGGGGCCA‑TCCACCGATTTTTCTGCTTCTCGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTAc                                                                                         <  2:14195832/134‑1 (MQ=25)
                                        aaacaccTCGGAACCCTGTGGGAGAGGGCTCGCCCGAGAACACCGGAAAAGCAGGTGCCA‑TCCACCGGGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACaa                                                                                       <  2:5883916/136‑1 (MQ=255)
                                                      ccTGTGGGATCGGGCTCGCCCGCGAACACCGGCAAAACCGGTCCCA‑TCCACGGAGTTGTCTGCTTCGTGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAATAGGTAATTtctc                                                                         <  2:4629733/137‑1 (MQ=37)
                                                                       tcccGAGAACACCGAAAAAGCGGGTGCCA‑TCCACTGGGTTGTTTGTTTTGGGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGttt                                                        <  1:8119394/136‑1 (MQ=255)
                                                                       gCCCGAAAACACTGGAAAAGCTGGGGCCA‑TCCACTGGGTTGTTTTCTTTGCGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGttt                                                        <  2:7338361/137‑1 (MQ=255)
                                                                       gCCCGAAAACACAGGCAAATCTGGTTCCA‑TCCACTGGGTTGTTTGTTTCGTGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGttt                                                        <  1:12539585/137‑1 (MQ=255)
                                                                               acacCGGCAAGTCTGTTGCCC‑TCCACTGGGTTTTTTGCTTTTTGTGTGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCa                                                <  2:12543953/137‑1 (MQ=255)
                                                                                cacCGGCAAAGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCAc                                               >  1:14370173/1‑137 (MQ=255)
                                                                                    ggCAAAGCAGGTACCA‑TCCACCGAGTCTTTTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGc                                           <  2:6918015/137‑1 (MQ=255)
                                                                                      cAAAGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCCAAGCTTGCTTGGGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAGTCGGTTTCATCGGCACCGGcat                                         >  1:12713323/1‑137 (MQ=255)
                                                                                      cAAAGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAACTCGGTTTCATCGGCACCGGcat                                         >  1:15975228/1‑137 (MQ=255)
                                                                                      cAAAGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcat                                         >  2:137110/1‑137 (MQ=255)
                                                                                      cAAAGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcat                                         >  2:11239000/1‑137 (MQ=255)
                                                                                      cAAAGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcat                                         >  2:11755638/1‑137 (MQ=255)
                                                                                      cAAAGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcat                                         >  2:5984609/1‑137 (MQ=255)
                                                                                      cAAAGCCAGTGCCA‑CCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATCACAAAGAGGTCGTTTCTCATGGCTAAAATCGGTCTCATCGTCACCGGcat                                         >  1:3533800/1‑137 (MQ=255)
                                                                                        aaGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcatca                                       >  1:12289648/1‑137 (MQ=255)
                                                                                        aaGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcatca                                       >  1:5706820/1‑137 (MQ=255)
                                                                                        aaGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcatca                                       >  2:17808188/1‑137 (MQ=255)
                                                                                          tcgggTGCCA‑CCCCCCGATTTGTCTGCTTCGAGGACGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATg                                     <  2:1689230/134‑1 (MQ=255)
                                                                                          gtcGGGGCCA‑TCCATTGGTTTGTTTGTTTCGCGGATGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTAAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATg                                     <  1:13509374/135‑1 (MQ=255)
                                                                                          gctggggCCA‑CCCACGGAGTTTTTTGTTTCGTGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATg                                     <  2:11741213/131‑1 (MQ=255)
                                                                                          gcgggTGCCA‑CCCACTGGGTTGTTTTTTTCGTGGGAGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATg                                     <  2:2862518/134‑1 (MQ=255)
                                                                                          gcgggTGCCA‑CCCACCGGTTTGTTTTTTTCGGGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATg                                     <  2:3933661/134‑1 (MQ=255)
                                                                                          gCCGGGGCCA‑TCCACGGGGTTGTCTGCTTTGTGGGCGAACCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATg                                     <  2:12063648/137‑1 (MQ=255)
                                                                                            cGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATggg                                   >  1:7314252/1‑137 (MQ=255)
                                                                                              gTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCa                                 >  2:5358140/1‑137 (MQ=255)
                                                                                                ttccctCCACCGAGTTTTCTGCTCCGTGCGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAAGTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCaa                                <  2:13913255/132‑1 (MQ=255)
                                                                                                 ccA‑TCCACTGGGTTGTCTGCTTGGCGGAAAAACCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                              <  1:16896410/137‑1 (MQ=255)
                                                                                                  cA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGcc                             >  1:2993034/1‑137 (MQ=255)
                                                                                                  cA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGcc                             >  1:12361543/1‑137 (MQ=255)
                                                                                                  cA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGcc                             >  2:13028763/1‑137 (MQ=255)
                                                                                                  cA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGcc                             >  2:7670016/1‑137 (MQ=255)
                                                                                                   cgtCCACCGATTTTTCTTCTTCGTGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGcc                             <  2:16281486/135‑1 (MQ=255)
                                                                                                        cccGATTTTTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                        <  2:12366644/136‑1 (MQ=255)
                                                                                                        aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                        >  1:8132963/1‑137 (MQ=255)
                                                                                                        aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                        >  1:401932/1‑137 (MQ=255)
                                                                                                        aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                        >  2:3212223/1‑137 (MQ=255)
                                                                                                        aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                        >  1:131030/1‑137 (MQ=255)
                                                                                                         ccGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGc                       >  1:2642816/1‑137 (MQ=255)
                                                                                                          cGATTTTTCTGCTTTGCGGGCAACCCCGCTCCCACAGGGGGCCAAAGTTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCt                      <  1:9102053/137‑1 (MQ=255)
                                                                                                             tttgtttgtTTAGTGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                   <  1:12976983/136‑1 (MQ=255)
                                                                                                             tttGTCTGCTTCGCGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                   <  1:11042923/136‑1 (MQ=255)
                                                                                                             ttgttCTGCTTCGTGGGAAAACCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                   <  2:10683454/133‑1 (MQ=255)
                                                                                                             gttgttTGCTTCGCGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                   <  1:7773224/137‑1 (MQ=255)
                                                                                                             gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                   >  2:9525689/1‑137 (MQ=255)
                                                                                                               tGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGaa                 >  2:7774462/1‑137 (MQ=255)
                                                                                                               tGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGaa                 >  1:17483978/1‑137 (MQ=255)
                                                                                                                gtttGCTTCGCGGGCGAACCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAAc                <  2:8578233/134‑1 (MQ=255)
                                                                                                                 tCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGc                                           >  2:11030528/1‑109 (MQ=255)
                                                                                                                 tCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAAcc               >  1:18087258/1‑137 (MQ=255)
                                                                                                                 tCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAAcc               >  1:18286313/1‑137 (MQ=255)
                                                                                                                 ccttcTTCGCGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAAcc               <  1:10999822/133‑1 (MQ=255)
                                                                                                                   tGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTAAAAAGAGGTAATTTCTCATGGCTAAAATCGGCTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTg             >  2:1339820/1‑137 (MQ=255)
                                                                                                                    tcTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc            >  1:6445032/2‑137 (MQ=255)
                                                                                                                    gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc            >  1:10191192/1‑137 (MQ=255)
                                                                                                                    gCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc            >  1:8305399/1‑137 (MQ=255)
                                                                                                                      ttCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaa          >  1:13348643/1‑137 (MQ=255)
                                                                                                                      ttCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaa          >  1:4929620/1‑137 (MQ=255)
                                                                                                                      ttCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaa          >  1:3902275/1‑137 (MQ=255)
                                                                                                                      ttCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaa          >  1:17420174/1‑137 (MQ=255)
                                                                                                                      ttCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaa          >  1:1831473/1‑137 (MQ=255)
                                                                                                                      ttCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaa          >  1:1870901/1‑137 (MQ=255)
                                                                                                                      ttCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaa          >  1:1831515/1‑137 (MQ=255)
                                                                                                                       ttgtgggCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaa         <  1:7978499/133‑1 (MQ=255)
                                                                                                                       tCGTGGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaa         <  2:12350494/137‑1 (MQ=255)
                                                                                                                       tCGTGGGCAAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaa         <  2:18511569/137‑1 (MQ=255)
                                                                                                                       tCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaa         <  2:8342696/137‑1 (MQ=255)
                                                                                                                       tCGCGGGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaa         <  2:10117232/137‑1 (MQ=255)
                                                                                                                       tCGCGGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaa         <  1:3121711/137‑1 (MQ=255)
                                                                                                                       tCGCGGACGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaa         <  1:16650041/137‑1 (MQ=255)
                                                                                                                        tgtgggCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:15656382/134‑1 (MQ=255)
                                                                                                                        cttggccGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  1:15407918/131‑1 (MQ=255)
                                                                                                                        cgtggggGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:6700666/134‑1 (MQ=255)
                                                                                                                        cgtgggCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  1:11747623/134‑1 (MQ=255)
                                                                                                                        cgggggCGACCCCGCTCCCACAGGGGGCCAGAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCGAAAATCGGCTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:7862755/134‑1 (MQ=255)
                                                                                                                        cgcgTGCGACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  1:13779899/137‑1 (MQ=255)
                                                                                                                        cgcgGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:15141517/137‑1 (MQ=255)
                                                                                                                        cgcgGGCACCCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  1:9736882/137‑1 (MQ=255)
                                                                                                                        cgcgGGCAACCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  2:6261280/137‑1 (MQ=255)
                                                                                                                        cgcgGCCGATCCCGTTCCCACAGGGGGCCAAGGCTTGCTTTAGATAGCATAATGACAAAGAGTTAATCTCTCAGGGTTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa        <  1:16866341/137‑1 (MQ=255)
                                                                                                                         gcgGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAg       >  1:2493583/1‑137 (MQ=255)
                                                                                                                          cgGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAGTTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAgg      >  2:6046199/1‑137 (MQ=255)
                                                                                                                           gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc     >  1:5276166/1‑137 (MQ=255)
                                                                                                                           gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc     >  2:16983038/1‑137 (MQ=255)
                                                                                                                           gggCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGc     >  1:17832138/1‑137 (MQ=255)
                                                                                                                             gCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAg   >  1:9083875/1‑137 (MQ=255)
                                                                                                                              cGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAgg  >  2:3408088/1‑137 (MQ=255)
                                                                                                                                 |                                                                                                                                     
CGGGCCTGGGCTGGCTGAAAACCC‑ACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCA‑TCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGG  >  AE015451_phaM1/4889517‑4889777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑