Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AE015451_phaM1 3,484,017 Δ244,813 bp [PP_3091 CDS (conserved membrane protein of unknown function)][PP_3294 CDS (Universal stress protein family)] 233 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AE015451_phaM1 3484017 3728829 244813 1043 [0] [0] 1042 [PP_3091 CDS (conserved membrane protein of unknown function)]–[PP_3294 CDS (Universal stress protein family)] [PP_3091 CDS (conserved membrane protein of unknown function)],PP_3092 CDS (conserved protein of unknown function),PP_3093 CDS (conserved protein of unknown function),PP_3094 CDS (conserved exported protein of unknown function),clpV CDS (Protein ClpV1),PP_3096 CDS (conserved protein of unknown function),PP_3097 CDS (conserved protein of unknown function),PP_3098 CDS (conserved protein of unknown function),puuD CDS (uricase_urate oxidase),PP_3100 CDS (conserved protein of unknown function),PP_5562 CDS (conserved protein of unknown function),PP_5563 CDS (conserved membrane protein of unknown function),PP_5565 CDS (conserved protein of unknown function),PP_5566 CDS (protein of unknown function),PP_5567 CDS (protein of unknown function),PP_5568 CDS (conserved membrane protein of unknown function),PP_5569 CDS (protein of unknown function of phage origin),PP_5571 CDS (conserved protein of unknown function),PP_5572 CDS (protein of unknown function),PP_5573 CDS (protein of unknown function),PP_3102 CDS (conserved protein of unknown function),PP_3103 CDS (conserved protein of unknown function),PP_5574 CDS (conserved protein of unknown function),PP_3104 CDS (conserved protein of unknown function),PP_3105 CDS (conserved membrane protein of unknown function),PP_3106 CDS (conserved protein of unknown function),PP_5575 CDS (conserved protein of unknown function),PP_3107 CDS (conserved protein of unknown function),PP_3108 CDS (Rhs‑related protein),PP_5576 CDS (conserved protein of unknown function),PP_5578 CDS (conserved protein of unknown function),PP_3109 CDS (conserved protein of unknown function),PP_5579 CDS (conserved protein of unknown function),PP_5580 CDS (protein of unknown function),PP_5582 CDS (conserved protein of unknown function),PP_5583 CDS (conserved protein of unknown function),PP_3110 CDS (protein of unknown function),PP_5584 CDS (protein of unknown function),PP_3113 CDS (transposase),PP_3114 CDS (transposase),PP_3115 CDS (transposase),lexA‑II CDS (transcriptional repressor),PP_3117 CDS (putative protein involved in error‑prone processing of DNA lesions),imuB CDS (DNA linked enzyme involved in DNA repair),dnaEB CDS (error‑prone DNA polymerase),yeaE CDS (methylglyoxal reductase),PP_3121 CDS (transcriptional regulator_ LysR family),atoA CDS (acetoacetyl CoA‑transferase (subunit A)),atoB CDS (acetoacetyl CoA‑transferase (subunit B)),PP_3124 CDS (putative short chain fatty acid transporter),PP_3125 CDS (putative transcriptional regulator (Cro_CI family)),PP_5586 CDS (exported protein of unknown function),PP_3126 CDS (putative polysaccharide exported protein),PP_5587 CDS (conserved protein of unknown function),PP_3127 CDS (putative Exopolysaccharide transport protein),PP_3128 CDS (putative Exopolysaccharide biosynthesis_transport protein),galE CDS (UDP‑glucose 4‑epimerase),PP_3130 CDS (conserved exported protein of unknown function),PP_3131 CDS (conserved membrane protein of unknown function),PP_3132 CDS (putative Polysaccharide transporter),PP_5588 CDS (conserved protein of unknown function),PP_3133 CDS (putative Oxidoreductase),PP_3134 CDS (conserved protein of unknown function),PP_3135 CDS (putative Glycosyl transferase),PP_3136 CDS (putative O‑acetyltransferase),PP_3137 CDS (Glycosyl transferase_ group 2 family protein),PP_3138 CDS (VirK domain protein),PP_3139 CDS (Glycosyl transferase_ group 1 family protein),PP_3140 CDS (Glycosyl transferase_ group 2 family protein),PP_3141 CDS (Glycosyl transferase_ WecB_TagA_CpsF family),PP_3142 CDS (putative Sugar transferase),PP_3143 CDS (Transcriptional regulator_ LysR family),tdcG‑III CDS (L‑serine dehydratase),PP_3145 CDS (conserved protein of unknown function),PP_3146 CDS (putative Oxidoreductase),potF‑II CDS (putrescine‑binding periplasmic protein),PP_3148 CDS (putative Glutamine synthetase),PP_3149 CDS (Transcriptional regulator_ AraC family),PP_3150 CDS (conserved protein of unknown function),sad‑II CDS (NAD+‑dependent succinate semialdehyde dehydrogenase),yneJ CDS (putative DNA‑binding transcriptional regulator_ LysR‑type),PP_3153 CDS (conserved exported protein of unknown function),pagL‑II CDS (lipid A 3‑O‑deacylase),PP_3155 CDS (putative Outer membrane ferric siderophore receptor),PP_3156 CDS (Universal stress protein family),PP_3157 CDS (Inositol monophosphatase family protein),PP_3158 CDS (conserved exported protein of unknown function),PP_5589 CDS (protein of unknown function containing Rhs repeat‑associated core domain),benR CDS (BenABC operon transcriptional activator),PP_3160 CDS (conserved protein of unknown function),benA CDS (benzoate 1_2‑dioxygenase subunit alpha),benB CDS (benzoate 1_2‑dioxygenase subunit beta),benC CDS (benzoate 1_2‑dioxygenase electron transfer component),benD CDS (1_6‑dihydroxycyclohexa‑2_4‑diene‑1‑carboxylate dehydrogenase),benK CDS (benzoate MFS transporter),catA‑II CDS (catechol 1_2‑dioxygenase),benE‑II CDS (benzoate transport protein),nicP‑I CDS (porin‑like protein),PP_3169 CDS (conserved membrane protein of unknown function),PP_3170 CDS (Transcriptional regulator_ LysR family),PP_3171 CDS (conserved protein of unknown function),PP_3172 CDS (Group II intron‑encoding maturase),nemA CDS (N‑ethylmaleimide reductase_ FMN‑linked),PP_3174 CDS (putative Oxidoreductase),PP_3175 CDS (putative Dioxygenase_ ferredoxin reductase component),PP_3176 CDS (Major facilitator family transporter),PP_3177 CDS (conserved protein of unknown function),garK CDS (glycerate kinase),PP_3179 CDS (Transcriptional regulator_ LysR family),PP_3180 CDS (Smp‑30_Cgr1 family protein),PP_3181 CDS (Site‑specific recombinase_ phage integrase family),PP_3182 CDS (GGDEF domain protein),PP_3183 CDS (SCO1_SenC family protein_cytochrome c),mcoA CDS (Mn(II) copper oxidase A),PP_mr40 ncRNA (TPP regulatory region),pet CDS (Pet18 protein),PP_3186 CDS (putative Transcriptional activator),codB CDS (Cytosine transporter),PP_3188 CDS (conserved protein of unknown function),codA CDS (cytosine deaminase _ isoguanine deaminase),PP_3190 CDS (Ornithine cyclodeaminase_mu‑crystallin family protein),PP_3191 CDS (putative threonine ammonia‑lyase _ dehydratase),PP_3192 CDS (conserved protein of unknown function),PP_3193 CDS (conserved protein of unknown function),PP_3194 CDS (conserved protein of unknown function),PP_3195 CDS (conserved protein of unknown function),PP_3196 CDS (Nodulation protein d1),PP_3197 CDS (Glyoxalase family protein),PP_3198 CDS (Ferredoxin_ 2Fe‑2S),PP_3199 CDS (putative Monooxygenase),PP_3200 CDS (conserved exported protein of unknown function),PP_5590 CDS (conserved exported protein of unknown function),PP_3201 CDS (BNR domain protein),PP_3202 CDS (putative Transporter),PP_3203 CDS (Major facilitator family transporter),PP_3204 CDS (conserved protein of unknown function),PP_3205 CDS (Fumarylacetoacetate hydrolase family protein),PP_3206 CDS (conserved protein of unknown function),PP_3207 CDS (putative Cyclase),PP_3208 CDS (Oxidoreductase_ Pdr_VanB family),PP_3209 CDS (Isoxanthopterin deaminase),PP_3210 CDS (ABC transporter_ permease protein),PP_3211 CDS (ABC transporter_ ATP‑binding protein),PP_3212 CDS (Rieske 2Fe‑2S family protein),PP_3213 CDS (ABC transporter_ periplasmic binding component‑related protein),PP_3214 CDS (conserved exported protein of unknown function),PP_3216 CDS (putative cysteine dioxygenase),PP_3217 CDS (putative Periplasmic aliphatic sulfonate‑binding protein),PP_3218 CDS (Monooxygenase_ NtaA_SnaA_SoxA family),PP_3219 CDS (putative Alkansulfonate monooxygenase),PP_3220 CDS (ABC transporter_ ATP‑binding protein),PP_3221 CDS (ABC transporter_ permease protein),PP_3222 CDS (ABC transporter_ permease protein),PP_3223 CDS (ABC transporter_ periplasmic binding protein),PP_3224 CDS (Class II aldolase_adducin domain protein),PP_3225 CDS (D‑isomer specific 2‑hydroxyacid dehydrogenase family protein),PP_3226 CDS (Acyl‑CoA dehydrogenase‑related protein),PP_3227 CDS (Transcriptional regulator_ LysR family),PP_3228 CDS (putative Periplasmic aliphatic sulfonate‑binding protein),PP_3229 CDS (putative Periplasmic aliphatic sulfonate‑binding protein),PP_3230 CDS (Phosphoribosyl transferase domain protein),PP_3231 CDS (conserved protein of unknown function),PP_3232 CDS (Acetyltransferase_ GNAT family),fnrB CDS (transcriptional regulator with 4Fe‑4S cluster_ Crp_Fnr family),PP_5591 CDS (conserved protein of unknown function),PP_3234 CDS (Heat shock protein_ HSP20 family),PP_3235 CDS (conserved protein of unknown function),PP_3236 CDS (putative Lipoprotein OprI),PP_3237 CDS (Universal stress protein family),PP_3238 CDS (putative Transcriptional regulator PyrR),tnpT‑II CDS (putative cointegrate resolution protein T Tn4652),PP_3240 CDS (conserved protein of unknown function),PP_5592 CDS (conserved protein of unknown function),PP_3241 CDS (conserved exported protein of unknown function),PP_3242 CDS (GGDEF domain protein),PP_3243 CDS (Acetyltransferase_ GNAT family),mgtC CDS (Magnesium transporter_ MgtC family),PP_3245 CDS (conserved protein of unknown function),crtZ CDS (Beta‑carotene hydroxylase),PP_3247 CDS (Transporter_ bile acid_Na+ symporter family),PP_3248 CDS (Dyp‑type peroxidase family protein),PP_3249 CDS (putative oxidoreductase),PP_3250 CDS (putative Transporter),PP_5593 CDS (conserved protein of unknown function),PP_5594 CDS (conserved protein of unknown function),PP_3251 CDS (conserved protein of unknown function),PP_3252 CDS (Modification methylase_ HemK family),PP_3253 CDS (Carboxylate‑amine ligase PP_3253),PP_3254 CDS (putative Nucleosidase),PP_3255 CDS (non‑homologous end joining protein),PP_3256 CDS (Glycosyl transferase_ group 2 family protein),PP_3257 CDS (putative Methyltransferase),PP_3258 CDS (conserved protein of unknown function),PP_3259 CDS (Acyl‑CoA dehydrogenase‑related protein),ligD CDS (DNA ligase D),PP_3261 CDS (conserved protein of unknown function),PP_3262 CDS (putative Metallothionein),PP_5595 CDS (conserved exported protein of unknown function),ybhN CDS (phospholipid modification enzyme),clsB CDS (cardiolipin synthase 2),ybhP‑I CDS (putative phosphohydrolase of unknown function),PP_3266 CDS (conserved protein of unknown function),PP_3267 CDS (putative Clp protease),PP_3268 CDS (MutT_nudix family protein),PP_3269 CDS (conserved protein of unknown function),PP_5596 CDS (conserved protein of unknown function),PP_5597 CDS (conserved protein of unknown function),paaZ CDS (oxepin‑CoA hydrolase_3‑oxo‑5_6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase),phaK CDS (phenylacetic acid‑specific porin),actP‑III CDS (acetate permease),PP_3273 CDS (conserved protein of unknown function),paaE CDS (ring 1_2‑phenylacetyl‑CoA epoxidase_ reductase subunit),paaD CDS (putative subunit of phenylacetate degradation enzyme),paaC CDS (ring 1_2‑phenylacetyl‑CoA epoxidase beta subunit),paaB CDS (ring 1_2‑phenylacetyl‑CoA epoxidase regulatory subunit),paaA CDS (ring 1_2‑phenylacetyl‑CoA epoxidase alpha subunit),paaK CDS (phenylacetate‑CoA ligase),paaJ CDS (3‑oxoadipyl‑CoA_3‑oxo‑5_6‑dehydrosuberyl‑CoA thiolase),paaI CDS (hydroxyphenylacetyl‑CoA thioesterase),paaH CDS (3‑hydroxyadipyl‑CoA dehydrogenase),paaG CDS (1_2‑epoxyphenylacetyl‑CoA isomerase),paaF CDS (enoyl‑CoA hydratase‑isomerase),paaY CDS (detoxifying thioesterase of the phenylacetate degradation pathway),paaX CDS (DNA‑binding transcriptional repressor PaaX(phenylacetyl‑CoA)),fnrC CDS (transcriptional regulator with 4Fe‑4S cluster; Crp_Fnr family),PP_5598 CDS (conserved protein of unknown function),PP_3288 CDS (Universal stress protein family),PP_3289 CDS (Acetyltransferase_ GNAT family),PP_3290 CDS (Universal stress protein family),PP_3291 CDS (Metallo‑beta‑lactamase family protein),PP_3292 CDS (conserved membrane protein of unknown function),PP_3293 CDS (conserved membrane protein of unknown function),[PP_3294 CDS (Universal stress protein family)]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451_phaM1 = 34840160 (0.000)916 (1.020) 117/266 0.4 100% coding (1908/3804 nt) PP_3091 CDS (conserved membrane protein of unknown function)
?AE015451_phaM1 3728830 = 0 (0.000)coding (701/891 nt) PP_3294 CDS (Universal stress protein family)