| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,991,236 | 0 | C | G | 27.5% | 180.2 / 21.6 | 94 | intergenic (+37/‑170) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| Reads supporting (aligned to +/- strand): ref base C (5/53); new base G (22/0); total (41/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.98e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAAT > NZ_CP034943/2991099‑2991374 | aaCTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTgttgtt > 2:1928195/1‑140 (MQ=255) tgcaacgCTCTAAAGCTTACTATGATTGGCTGAACCGGCTTCCTGAATCGGTGCAGAGCGGGTAATTTTTTAAATTTATCCCGATTGAAAAAAAGTAAAACAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCttttt < 1:1025355/134‑1 (MQ=255) aacgCTCTAACGCTTACTATGTTTGGCTGAACGGGCTTGCTGAATCGGTGCCGCGCGGGTAAATTTTTAAATTTATACCGATTCAAACAAAGTAAACCAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTAt < 1:890975/137‑1 (MQ=255) aaaGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTAt < 2:1633075/140‑1 (MQ=255) ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAACCCGGGCGT‑GTTTTTTTTGTTTTTTTTTTaa > 1:226425/1‑140 (MQ=255) ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTATTTaa > 1:1853613/1‑140 (MQ=255) tctAAAGCTTACTATTATTGGATTAAACGGCTTGCTTAAGCGGTGCAGCGCGGGCAAATTTTTAAATTTATACCTATTGAAAAAAATTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAAt < 1:6381/140‑1 (MQ=255) tatAAAGCTTACTATGAGTGGCTGAAACGGCTTGATCACTGGGTGCAGCGCGGGTAATTTTTTAATTTTATACCGATTGAAACAAAGAAAAACAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAAt < 1:243813/138‑1 (MQ=255) tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAATACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTTTTTTTTTTTTTAAtt > 2:149891/1‑140 (MQ=255) tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTAATta > 1:1855477/1‑140 (MQ=255) tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTTTAATta > 1:384887/1‑140 (MQ=255) tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GGTTTTTTTGTTTTTTTTTTAATta > 1:53687/1‑140 (MQ=255) tACTATGATTGGCTGAAACGGCTTGCTGACTCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTTTTATTTTTTATGTGATTAATACaaa > 2:855897/1‑140 (MQ=255) tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAATACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTATTTTTTATTTAAATACTACaaa > 2:1174248/1‑140 (MQ=255) tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TGTTTTTTTGTTTTTTTTTTTATTAATAaaaa > 1:791897/1‑140 (MQ=255) tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TGTTTTTTTGTTTTTTTTTTAATTAATACaaa > 2:444889/1‑140 (MQ=255) tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTATTTTTTTTTTTATtacttccaa > 1:1014477/1‑135 (MQ=255) tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GGTTTTGGTTTTTTTTTTTTAATtaaaaaaaa > 1:794063/1‑133 (MQ=255) tACTATGATTCGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTGTTGTTCTTTTTTATGTAATTACTAaaaa > 2:1919587/1‑140 (MQ=255) aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTTTTTAATTAATAAAAA‑t > 1:920091/1‑140 (MQ=255) aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTTGTTAAATACTACAAA‑t > 2:889315/1‑140 (MQ=255) aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTTTGTAATTACTACAAA‑t > 2:1440242/1‑140 (MQ=255) aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTGTTTTTCTTTTTTATGTAATTACaaaaaaa > 2:1163370/1‑139 (MQ=255) aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGG‑TGTTTGTTTGATTTTTATATAATtacatcaaca > 2:1965491/1‑133 (MQ=255) aTGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAAAAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTg < 1:642737/140‑1 (MQ=255) aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTGTGTTTTTGTATTTACTAAAAA‑tttttaa > 1:1935389/1‑136 (MQ=255) aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GGTTTTGTTTTTTTTTTTGTTATTTATAAAAA‑ATTGtaa > 1:1634599/1‑140 (MQ=255) ttGGCTGAGACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTGTTAATAATAAAAA‑attttaaa > 1:958324/1‑135 (MQ=255) ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGGAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTTTTTTTTTTTAATTAATAAAAA‑ATTTaaaa > 1:675314/1‑140 (MQ=255) ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TGTTTTGTTAATTTTTATGTAATTAATACAAA‑TTTTaaaa > 1:870531/1‑140 (MQ=255) gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTATTTTTTATGTAATTACTAAAAA‑TTTGAAAAATa > 2:61255/1‑140 (MQ=255) tGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTTTGTTATTAATAAAAA‑TTTTAAAAATACg > 2:1831001/1‑140 (MQ=255) cTTGCTTAATCGGTGCAGAGCGGGTAAATTTTTAAATTTATACCTATTTAAAAAAATTAAAAAAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAAc < 1:1527404/140‑1 (MQ=255) cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAAc < 1:867548/140‑1 (MQ=255) cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGTAATTAATACAAA‑TTTTAAAAAAACGGGaaaaaa > 2:640542/1‑139 (MQ=255) cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTAATACCGATTGAAACAAAGTAAAACAAAATCGCCTGGGAAACCGGGCGT‑GGTTTTGTTGGTTTTTATGTAATTACGACAAA‑TTTGAAAAATACGGGAAAAAc > 2:850794/1‑140 (MQ=255) tGCTGAATCGGTGCAGAGCGGGTAAATTTTTAAATTTATACCGATTCAAACAAATTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAt < 1:524331/140‑1 (MQ=255) tGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAt < 1:103911/140‑1 (MQ=255) tGCTCAAGCGGTCCAGAGCGGGGAAAATTTAAAATTAATACCGATTGAAAAAACCTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAAGTACTACAAA‑TTTGAAAAATACGGGAAAAACAt < 1:516194/140‑1 (MQ=255) cTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑cc < 2:1881705/140‑1 (MQ=255) tCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAATCCGGGCGT‑TGTTTTGGTCTTTTTTATTTAATTCATACACA‑TGTGACACATACGGGGAAAACAA‑ccccgtt > 2:687113/1‑136 (MQ=255) gTGCAGAGCGGGGAAATTTTTAAATTTATACCGAATTAAAAAACGTAACACAACCACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACt < 1:1174248/140‑1 (MQ=255) cgcgCGGGGAAATTTTTAAATTTATACCGATTTAAAAAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCa < 1:1644826/137‑1 (MQ=255) agagCGGTTAAATTTTTAAATTTATACCTATTCAAACAACTAAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCa < 1:1065153/140‑1 (MQ=255) gttaaaTTTTTAAATTTATACCGTTTTAAACAAACTAAAACAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAatat < 1:657397/137‑1 (MQ=255) ggtaaaTTTTTAATTTTATACCTATTTAAAAAAATAAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAatat < 1:277697/137‑1 (MQ=255) gggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAatat < 2:1969085/140‑1 (MQ=255) ggcaaaTTTTTAAATTTATACCCATTCAAAAAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAatat < 1:277711/137‑1 (MQ=255) tcaaaTTTTTAAATTTATAGCTATTTAAAAAAAGTAAAACAAAAACGCCTGGGAAAAATGTCGT‑TTTTTTTTTATTTTTTATTTAAATAATACAAA‑TTTTAAAAATAAGGGGAAAACAT‑ACCATTTAATTACAAAAAAtt > 2:572254/3‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGACACCGGGCGT‑GTTTTTGTTGGTTTTTATGTAATTACGACAAA‑TTTTAAAAATAAGGGAAAAAAAT‑ACCATTTTATTCCGAAATAtt > 2:1361050/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAATAAAT‑CCCAGTTACTTCCAAAatatg > 2:1472358/1‑139 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTTTGTAATTACTACAAA‑ATTGAAAAAGACGGGAAAAAAAT‑CCCAAGTACATACCAAATAtt > 2:1537493/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTGTGATTACGACAAA‑TTTGGAAAATACGGGAAAAACATCCCCATTTA‑GTCCAAAAGAtt > 2:328392/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTGTTTTTTGTTTTTTATTTAATAAAAAAAAA‑ATTGTAAAATAAGGGAAAAACAA‑ACCAATTAATTGCAAAAAAtt > 2:526146/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGG‑TTTTTTGTTGTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAA‑CCCATTTACTTCCAAAAAAtt > 2:459634/1‑140 (MQ=255) tttttAAATTTATACCGATTCAAACAAAGAAAAACAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATg < 1:526146/140‑1 (MQ=255) ttttAAATTTATACCTATTGAAACAAAGTAAAAAAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATgg < 1:444889/140‑1 (MQ=255) ttttAAATTTATACCGATTTAAACAACGTAAACCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATgg < 1:1924186/140‑1 (MQ=255) tttatttttATACCGATTTAAAAAAACTAAAACAAAAACGCCTGGGAAACCGTGCTT‑TTTTTTTTTCTTTTTTATGTAATTAATACAAA‑TTTGAAAAATACGGGAAAAACAT‑CACATTTACTTCCAAAATATTTGATGGt < 1:1693520/134‑1 (MQ=255) tttAAATTTATACCGATTTAAAAAAAGAAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGt < 1:1448263/140‑1 (MQ=255) ataCCTATTGAAACAAAGAAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCATTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATg < 1:1767405/140‑1 (MQ=255) ataCCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATg < 1:232595/140‑1 (MQ=255) gATTGAAACACACAAAACCAAACACGCCGGCGCAACCGGGCGT‑TATTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACCT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt < 1:1725396/140‑1 (MQ=255) atgaaaaaaaAGAAAAACAAAAACGCCTGGGAACCCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTa < 1:149891/136‑1 (MQ=255) aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTATGTAAATAAAAAAAA‑TTTTAAAAAAAAGGGAAAAAAAA‑ACCATTTAATTACAAAAAAATTGTTTGTAAATTTATGTAGGTa > 2:1813097/1‑140 (MQ=255) aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTTTTTTTTATTTAATTAAAACAAA‑TTTTAAAAATACGGGAAAAAAAT‑ACCATTTAATTACAAAATATTTGATGGTAAATTTATGTAGGTa > 2:1448668/1‑140 (MQ=255) aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTTTTTTTTTGTTATTAATACAAA‑GTTTAAAAATAAGGGAAAAACAT‑AACATTTAAGTACAAAAAATTTTCTGGTAATTTTATTTAGGTa > 2:122892/1‑140 (MQ=255) aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTTTTTTTATGTAATAAATACAAA‑TTTTAAAAAAAACGGAAAAACAT‑CCCCTTTACTTACAATAAATTTTATGGTAATTTTATTTAGGTa > 2:300902/1‑140 (MQ=255) aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTTTAATTAATAAAAA‑ATTTTAAAAAAAGGGCAAAAAAA‑CACATTTTCTTACAAAAAATGTTTTTGTAATTGTTTGTAGGtt > 1:494852/1‑139 (MQ=255) aaGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTa < 2:920091/140‑1 (MQ=255) aaccAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATAGTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 1:1809588/137‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAACACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 1:810230/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTGCTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 1:1412654/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:1855477/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 1:498104/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 1:518536/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 1:211587/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:53687/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 1:1673295/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:384887/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg < 2:384742/140‑1 (MQ=255) caaaCCCCTGGGAAACCGGGCTT‑ATTTTTGTTCTTTTTTATGTAATTACTACAAA‑TGTGAAAAATACGGGAAAAACAT‑CCCATTTACTACCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGtt < 2:1954838/139‑1 (MQ=255) aaaCGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATGTTATTACTACAAATTTTTAAAAAAAGGGGAAAAAATA‑CCCGTTTA‑TTCCAAAAAATTTGATGGTAATTTTATGTAGGTAAAATTTGTGTTTGGCCGttg > 2:1734010/1‑139 (MQ=255) actccTGTGAAACCTGTAGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATTGTAATTTTTTTTATTTAAAATTTGTATTTGGCCGttatt < 2:1596544/137‑4 (MQ=255) aCGCCTGGGAAACCGGGCTT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTCCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag < 2:1710527/140‑1 (MQ=255) aCGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag < 2:1710441/140‑1 (MQ=255) aCGCCTGGGAAACCGGGCGT‑TATTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag < 1:1675824/140‑1 (MQ=255) gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag < 1:1813097/140‑1 (MQ=255) gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag < 1:1448668/140‑1 (MQ=255) cGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg < 2:1573090/140‑1 (MQ=255) cGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg < 2:407809/140‑1 (MQ=255) cGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg < 1:830135/140‑1 (MQ=255) cGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCAATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg < 2:1572402/140‑1 (MQ=255) tCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAat < 2:12012/140‑1 (MQ=255) tCTTTTTTATGTAAGTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAat < 2:1688622/140‑1 (MQ=255) | AACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAA‑TTTGAAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAAT > NZ_CP034943/2991099‑2991374 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |