| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 177,056 | 0 | C | A | 24.4% | 135.1 / 14.1 | 78 | intergenic (+229/‑43) | EO946_RS01020/EO946_RS01025 | alcohol dehydrogenase/SulP family inorganic anion transporter |
| Reads supporting (aligned to +/- strand): ref base C (28/31); new base A (19/0); total (47/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.81e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCGTATTTGATCAAAATTTAATATGATACTCTTTGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCATTAATACCTGAAG > NZ_CP034943/176917‑177195 | gCGTATTTGATCAAAATTTAATATGATACTCTTTGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTATCCCGTAAAATAAAGAAAGCTCCCAATacaac > 2:1018464/1‑140 (MQ=255)gCGTATTTGATCAAAATTTAATATGATACTCTTTGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTAATTTGATTTATAACGTAAAATAAATAAAGCAGACAATacaac > 2:1122718/1‑140 (MQ=255) tttGATCAAAATTTAATATGATACTCTTTGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTACCGTAAAATAAAGAAAGCTCCCAATAAAACAAATa > 2:1459887/1‑140 (MQ=255) ttGATCAAAATTTAATATGATACTCTTTGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTAATTTATACACTAAAATAAAGAAATCTACCAAAACAACAAATAc > 2:814173/1‑140 (MQ=255) gATCAAAATTTAATATGATACTCTTTGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCATTTTCTCCGGTCGTTTTCCTTTCATTTATACCGTAAAATAAAGAAAACTCCCCATAAAAAAAATACgg > 2:980048/1‑140 (MQ=255) aTCAAAATTTAATATGATACTCTTTGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTGTTCCTTTAAATTATACCGTAAAATAAAAAAATCTCCCAAAAAAAAAAAAAAGGt > 1:475021/1‑140 (MQ=255) aCTCTTTGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTaaa < 1:1268515/140‑1 (MQ=255) aCTCTTTGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTaaa < 1:1826477/140‑1 (MQ=255) tttGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAgg < 2:1510057/140‑1 (MQ=255) tttGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAgg < 2:1008478/140‑1 (MQ=255) tttGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTGTTGCTTTTATTTCTACCCTAAAAAAAAGAAAGCACCCAAAAAAACAAAAAAAGGGCGGCATTTTTTTTTTAAAAAg > 1:552544/1‑140 (MQ=255) tttGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTGTTGCTTTAATTTTTGCCGTAAAATAAAGAAAAAGACCAAAAAAAAAAATAAGGTGGGG‑AATTATTTTTTtaaaatt > 1:673243/1‑138 (MQ=255) tttGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTGTTACTTTCATTTCTCCCGTAAAATAAACAAACCACACAAAACAACAAAAAAGGTGCGG‑ATTTATTTTTTAAAAAgg > 2:189593/1‑140 (MQ=255) tttGTATAATAACTCCTTGCCTCAAAAAAACATACTCAACGTGTCCTCTGTATCTCCGGTCGTGTTTCTTTAATTTGAGCCGTAAAAAAAATTCTCCGGCCAAAACAACAAAAAAGGGGGGG‑CTTTATTTTTTtaaaaag > 1:552714/1‑138 (MQ=255) ttGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGa < 1:1166484/140‑1 (MQ=255) aggTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGa < 1:927341/138‑1 (MQ=255) tGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTGCTTTGATTTGTACCGTAAAAAAAATAAATCTCCCAATAAAAAAAAAACCGGGGGG‑ATTTATTTTTTAAAAAGGAg > 1:1266199/1‑140 (MQ=255) tGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTGCTTTGATTTATACCCGAAAAAAAAGAAAACACCCAAAAAAAAAAAAACGGTGCGG‑ATTTATTTTTTAAAAAgtat > 1:1676671/1‑137 (MQ=255) tGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTGTTGGGTTAAATTATACCCGAAAAAAAAAAAAACAGCCACAACAACAAAAAACGTGGGG‑ATTTATTTTTTAAAAAagag > 1:685661/1‑140 (MQ=255) cTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTGCTTTCATTTTTACCGTAAAAAAAATAAAGCTCCCAAAAAAAAAAAAAACGTGCGG‑ATTTATTTTTTAAAAAAGAGTAGTtttaat > 1:1400568/1‑138 (MQ=255) cTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTGTTGCTTTAATTTCTCCCGTAAAAAAAAGAAATCTCCCAAAACAACAAAAAACGTGGGG‑GTTTATTTTTTAAAAATGAGTCGTGTTAtt > 1:462958/1‑140 (MQ=255) cTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTGTTACTTTGATTTTTCCCCTAAAATTAATAAAGCGCCCAATACAACAACTACGGTGGGG‑GTTTGTTTTTTTAAAAAGAGTCGtttttat > 1:1190665/1‑135 (MQ=255) cTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTATCCGGTCGTTTTCCTTTCATTTCTCCCCTAAAATAAAGAAATCTCCCAAAAAAACAAATACGGGGCGG‑CTTTATTTTTTAAAAAGGAGTCGTGAGAtt > 2:1265168/1‑140 (MQ=255) ccTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTGCTTTGATTTATCCCGTAAAATAAATAAAGCTCCCAAAACAAAAAATACGGTGCGG‑ATTTTTTTTTTTAAAAGGTGTGGTTAttttgt > 2:927341/1‑138 (MQ=255) ccTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTGCGTTCATTTCTCCCGTAAAAAAAAGAAAGCTCCCAATACAAAAAATTCGGGGGGG‑ATTTAATTTTTAAAAAGTTGTCGTTTTAttgt > 2:1650863/1‑138 (MQ=255) ccTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCAGTTCATTTGTCACGTAAAATAAAGAAACCTGCCCAAAAAAAAAAAACGGGGGGG‑GTTTATTTTTTAAAAAAGAGTGGGTATATTTg > 2:1650893/1‑140 (MQ=255) ccTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTGTTGGTTTGCTTTCTGCCGGAAAATAAAGAAAGCGCCCAAAACAAAAAAAAAGGGGGGG‑GGTTATTTTTTTAAAAGGAGTGGTgattattt > 1:1257961/1‑135 (MQ=255) ccTTGCCTCAAAACAACATACACAACGTGTCCTCTTTTTCTCCGGTCGTGTGGGTATGAATTAAACCCTAAAATAAAGAAATCGCCCAAAACAAAAACTACGGTGCGG‑CGTTATTTTTTTATAAGGTGTCTGTTTAtttt > 1:380533/1‑139 (MQ=255) ttGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTGTTGCGTTTATTTGTCCCGTAAAATAAATAAATCACCCCAAAAAAAAAAAAAGGTGGGG‑GTTTTTTTTTTTTAAATGTGTGGTTTTAttttta > 1:954940/1‑137 (MQ=255) tGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTGCTTTGATTTGTCACGTAAAAAAAATAAAGCTCCCCAAAAAAAAAATACCGTGCGG‑GTTTTTTTTTTAAAAATATGTCGTGATAttttgat > 1:1416744/1‑136 (MQ=255) tGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATAAGGTGCGG‑ATTTATTTTTTAAAAAGTAGTGGTTATATTTGaaa > 2:393144/1‑139 (MQ=255) atccTCAAAACAACATACTCAAATTTTCATAATTTTATCAGCTCGTTTTACTTTCATTTCTCCCCTAAAATAAAGAAAGATACCAAAAAAAAAAAAAAGGTGCGG‑ATTTATTTTTTAAAAATGAGTCGTTATATTTTaat > 2:367830/3‑140 (MQ=255) atccTCAAAACAACATACTCAAATTGTCCTCATTTTAACCGGTCGTGTTCCTTTGATTTATCCCCTAAAAAAAAGAAAGCAACCAATAAAAAAAAAAAGGTGCGG‑ATTTATTTTTTAAAAATGAGTGGTTATATTTTaaa > 2:898285/3‑139 (MQ=255) ccTCAAAAGATCATACTCAACGTGTCCTTTTTTTCTCCGTTCGTTTTACTTTCATTTCTGACTTAATATAATGATATCTCCCAATACACCATATTCTGTTCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTgtttaa < 2:1267318/140‑6 (MQ=255) aaaaCAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTGTTGCTTTCCTTTCTGCCGTAAAAAAAAGAAAGCGCCCAATAAAACAAATAGGGGGGGG‑GTTTATTTTTGTAAAAGTAGGGGTTATAATTTGat‑aataat > 1:369806/1‑138 (MQ=255) aacaacATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGttt < 2:475021/140‑1 (MQ=255) aacaacAGACTCCACGTGTCCTCTTTGTCTCCGGTCGTCTTCCTTACATTTCTCCCGTAAAATAAACAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGttt < 2:1962782/140‑1 (MQ=255) aCTCAACGTGTCCTCTTTTTCTCCTGTCGTTTTACTTTAATTTCTACCGTAAAAAAAAGAAATCTCCCAATAAAACAAAAAAGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTTAAT‑AATATTTTTAAAATaa > 2:1452114/1‑140 (MQ=255) aCTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTGTACCGTAAAAAAAAGAAAGCTCCCAATAAAAAAAATAAGGGGCGG‑ATTTATTTTTTAAAAAGGAGTCGGTATAATTGAAA‑AATAGTTTTAAATTaa > 2:1540458/1‑140 (MQ=255) aCTCAACGTGTCCTCTTTTTCTCCGGTCGTGTTCCTTTCAATTATCCCCTAAAAAAAATAAAGCTCCCAAAACAACAAAAACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTGTTTTTGTAA‑AATAGTTTTAAATTaa > 2:238320/1‑140 (MQ=255) cAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAagc < 1:1839826/140‑1 (MQ=255) aaCGTGTCCTCTTTTTCTCCGGTCGTTTTGCGTTCATTTCTCCCGTAAAATAAATAAATCTCCCAATAAAACAAAAACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTTTAA‑AATAGTTTTACATTAAagca > 2:493983/1‑140 (MQ=255) aaCGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑AATTATTTTTTTAAAAGGAGTCGTTATATTTGAAT‑TATATTTTTAAATTAAagca > 2:419146/1‑140 (MQ=255) tgtCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAACAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCaa < 1:1907325/140‑1 (MQ=255) tgtCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCaa < 2:823581/140‑1 (MQ=255) tgtCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCaa < 2:1010868/140‑1 (MQ=255) ggtCCTCTTTGACACCGGTCGTTGTCCGGTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAACAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTATAGCAGCaa < 2:1730103/139‑1 (MQ=255) gtCCTCTTTTTCTCCGGTCGTGTTGCTTTGATTTGTGCCGTAAAATAAATAAAGCTCCCAATAAAACAAATACGGTGGGG‑GTTTTTTTTTTTAAAAGGAGTGGGGTTTTTTTTAT‑AATATTTTTTAAATAAATGAGCAAt > 1:457825/1‑140 (MQ=255) ctctTTTTCTCCGGTCGTTTTGCTTTCATTTTTCCCGGAAAATAAAGAAATCTCCCAAAACAAAAAATAACGGGCGG‑CTTTTTTTTTTAAAAAGGATTGGTTTTATTTTTAT‑AAAAGTTTTTAATTAAAACAGCAATGGt > 2:667034/1‑140 (MQ=255) ctctTTTTCTCCGGTCGTTTTACTTTAATTTCTCCCGTAAAATAAATAAAGCTCCCAAAAAAACAAAAAAGGGGGGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTTGAT‑AATATTTTTTAAATAAATAAGCAAAGGt > 2:651836/1‑140 (MQ=255) ctctTTTTCTCCGGTCGTGTTGCGTTAATTTATGCCCGAAAATAAAGAAAGCACCCAAAAAAAAAAATAACGTGCGG‑GTTTTTTTTTTTAAAAGGAGGCGGTTTTTTTTAATAAATATTTTTA‑AATAAATCAGCAAAGGt > 1:810125/1‑140 (MQ=255) ctTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTTAAT‑AATAGTTTTAAATTTAAGAAGCAATGGttg > 2:1434630/1‑139 (MQ=255) tctcCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGaa < 1:898285/140‑1 (MQ=255) tctcCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGaa < 1:367830/140‑1 (MQ=255) cGGTCGTTTTACTTTGATTTATCCCGTAAAATAAAGAAAGCTCCCAATAAAAAAAAAAAGGGGCGG‑ATTTATTTTTTAAAAAAGAGTCGTTATATTTGTAA‑AATATTTTTTAATTAAATAAGCAATGGTTAGGGAatata > 2:300517/1‑139 (MQ=255) ttCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGa < 2:1047325/140‑1 (MQ=255) ttCCTTTCATGTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGa < 2:723452/140‑1 (MQ=255) tcCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTg > 1:748616/1‑77 (MQ=255) tcCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTg < 2:748616/77‑1 (MQ=255) tcCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTTAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGc > 1:791452/1‑140 (MQ=255) tcCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGc > 1:251284/1‑140 (MQ=255) agTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCTGTAATATAATAAAAGACATTCTTGCTGGGAtt < 2:689892/139‑1 (MQ=255) tAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCAtttt > 1:1507712/1‑140 (MQ=255) aaTAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGACAAGACATTCTTGCTGGCATTTTAGt < 1:67509/140‑1 (MQ=255) agaaagCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGt > 2:701602/1‑140 (MQ=255) agaaagCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGt > 2:592673/1‑140 (MQ=255) aaagCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTa < 2:1266199/140‑1 (MQ=255) aaagCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTa < 2:685661/140‑1 (MQ=255) aagCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAg < 1:1459887/140‑1 (MQ=255) aagCTCCCAATAAAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAg < 2:1416744/140‑1 (MQ=255) cTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTTCATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCAt > 1:594632/1‑140 (MQ=255) cTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCAGTTTAGTTGCGTTAGCAt > 1:1494267/1‑140 (MQ=255) tCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCAtt < 2:1400568/140‑1 (MQ=255) tCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCAtt < 2:462958/140‑1 (MQ=255) tCCCAATACAACAAAGACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTAAATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGGTGCGTTAGCAtt < 2:1190665/140‑1 (MQ=255) cccAAGACCACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTAGCGTTAGCATTa < 1:1315270/140‑1 (MQ=255) ccAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAATACATTCTTGCTGGGAGTTTAGTTGCGTTAGCATTaa > 1:107444/1‑140 (MQ=255) ccAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCATTaa < 2:1676671/140‑1 (MQ=255) aTACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGGTAGCATTAATAc > 1:1446860/1‑140 (MQ=255) tACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCATTAATAcc < 1:107111/140‑1 (MQ=255) aacaaATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCATTAATACCTGa > 2:1858153/1‑140 (MQ=255) aacaaATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGGTAGCATTAATACCTGa > 1:197410/1‑140 (MQ=255) acaaATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCATTAATACCTGaa > 2:651938/1‑140 (MQ=255) acaaATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCATTAATACCTGaa > 1:1814833/1‑140 (MQ=255) acaaATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTGATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAAAATCCGAAAAGACATTCTTGCTGGCATTTTAGTTTCGTTAGCATTAATACCTGaa > 1:1134805/1‑140 (MQ=255) caaATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTATCATTAATACCTGAAg > 1:1897809/1‑140 (MQ=255) caaATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCATTAATACCTGAAg > 1:1299925/1‑140 (MQ=255) | GCGTATTTGATCAAAATTTAATATGATACTCTTTGTATAATAACTCCTTGCCTCAAAACAACATACTCAACGTGTCCTCTTTTTCTCCGGTCGTTTTCCTTTCATTTCTCCCGTAAAATAAAGAAAGCTCCCAATACAACAAATACGGTGCGG‑ATTTATTTTTTAAAAAGGAGTCGTTATATTTGAAT‑AATAGTTTTACATTAAAGCAGCAATGGTTCGGGAATATCCGAAAAGACATTCTTGCTGGCATTTTAGTTGCGTTAGCATTAATACCTGAAG > NZ_CP034943/176917‑177195 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |