| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 1,514,854 | T→G | 9.1% | intergenic (+58/+1) | EO946_RS07915 → / ← EO946_RS07920 | YlaH‑like family protein/YlaI family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,514,854 | 0 | T | G | 9.1% | 492.8 / 5.1 | 207 | intergenic (+58/+1) | EO946_RS07915/EO946_RS07920 | YlaH‑like family protein/YlaI family protein |
| Reads supporting (aligned to +/- strand): ref base T (59/118); new base G (26/3); total (85/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.48e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 208 total aligned reads displayed.
TGATCGTCGCTGCGCTGATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTGGGCGGTT > NZ_CP034943/1514717‑1514986 | tGATCGTCGCTGCGCTGATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCttt > 2:1248160/1‑140 (MQ=255) cgctgcgctgATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTAtttttt > 1:4547693/1‑140 (MQ=255) cgctgcgctgATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTAtttttt > 1:1230844/1‑140 (MQ=255) cgctgcgctgATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTGGTGTATGGTAAAGCGGCCGCTTTAtttttt > 1:4145065/1‑140 (MQ=255) cgctgcgctgATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑GTTGTTTGTGGTTTGTATGGTAAAGCGGCCGCGTTAtttttt > 2:2138198/1‑140 (MQ=255) aTTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TGTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTAGTTTTTGAatttttgt > 1:2881561/1‑138 (MQ=255) aTTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACACAGCTGAGAAGCGGAGTC‑TTTTTTTGGGGTTTGTATGGTAAACCGGCCGCGGTATTTTTTGActttttgt > 1:3135961/1‑138 (MQ=255) cATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTg < 1:895129/140‑1 (MQ=255) tttCCAACATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTATTGTGTTTTGTATGGTAAACCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCt < 2:139624/140‑1 (MQ=255) tttACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCt > 2:800972/1‑140 (MQ=255) tttACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCGGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCt < 2:3047803/140‑1 (MQ=255) cGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGACGCTGAGTCTTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTGTTTTTTTTGCTGTCCCGGGTg > 1:2214947/1‑140 (MQ=255) cGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTcc > 2:573199/1‑133 (MQ=255) cGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTcc < 1:573199/133‑1 (MQ=255) tATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGACGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGTCTTTTTCTTTTTTTTTGTGTCCCGGGTGATAAGTg > 1:4808844/1‑140 (MQ=255) cGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTc < 1:1710805/140‑1 (MQ=255) aaaaGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGACGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCg > 2:675914/1‑140 (MQ=255) aaaaGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTTCTGTCCCGGGTGAAAAGTGAATTTTCCCg > 2:3138244/1‑140 (MQ=255) aaaaGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTGTGTTGTGTTTTGTATGGTAAAGCGGCCGCGTTATTTTTTTACTTTTTGTTTTTTTTGGTGTCCCGGTTGTAAAGTTAATTTTACCg > 2:2039777/1‑140 (MQ=255) ggACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTTTTTTTTGGCTTTTTGTTTTTTTTTGTTTTCCGGGTGAAAAGTGTATTTTACCGttttg > 1:3802165/1‑139 (MQ=255) gACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGAATTTTTGTTTTTTTTGGTGTGCCGGGTGAAAAGTTAATTTTACCGTTTTCa > 1:3432598/1‑140 (MQ=255) gTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCg < 1:800972/140‑1 (MQ=255) tGCAAAATCATAAAATGACTCCGCTGAGAAGCTGAGTC‑TTTGTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTATTTTTTGACGTTTTCTTTTTTTTGCTGGGCCGGGTGAAAAAAGAATATTGCCCTTTTCAGCCGttc > 2:1909213/1‑140 (MQ=255) tGCAAAATCATAAAAAGACTCAGCTGAGACGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTGTTTTTTTTTCTGTCCCGGGTGAAAAGTGAATTTTACCGTTTTAAGCCGttg > 2:232925/1‑139 (MQ=255) aaaaTCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGttctta < 1:3857120/140‑2 (MQ=255) aaaTCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTtcttct < 1:1569340/140‑1 (MQ=255) aaaTCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTtcttct < 1:1339647/140‑1 (MQ=255) aaaTCATAAAAAGACTAAGCTGAGAAGCTGAGTC‑TTTTTTTGTTTTTTGTATGGTAAAGGGGGTGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTtcttct < 1:24965/140‑1 (MQ=255) cATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTATTTTTTGTCTTTTTGTTTTTTTTTCTGTCCCGGGTGGAAAGTGAATTTTCCCGTTTTGAGCCGTTCGTGTGttt > 1:4400747/1‑140 (MQ=255) cATAAAAAGACTCAGCTGAGAAGCGGAGTC‑TTTTTTGGTGTGTTGTATGGTAAAGCGGCCGCGTTCTTTTTTGTCTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGGGAATTTTCCCGTTTTCAGCCGTTCTTCTGttt > 2:2213088/1‑140 (MQ=255) tAAAAAGACTCAGCTGAGAAGCTGCGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATGTTTTGAGTTTTTGTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCGGGTCTTCTGttttt > 2:1105978/1‑140 (MQ=255) tAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTGTTTTTTTTTCTTTGGCGGGTGAAAAGTGAATTTTACCGTTTTACGCCGTTCTTGTGttttt > 1:517175/1‑140 (MQ=255) tAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGGGTTTTGTATGGTAAAGCGGCCGCGTTAGTTTTTGTATTTTTCTTTTTTTTGCTGTCCCGGGTGAAAACTGAATTTTACCCTTTTAAGCCGTTCGTGTGttttt > 1:3668930/1‑140 (MQ=255) tAAAAAGACTCAGCTGAGAAGCTGAGTC‑GTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTGTATTTTTTGACGTGTTGTTTTTTTTGGTGTCCCGGGTGAAAAGTGGATTTTCACGTTTTCGTCGGTTGTTGTGttttt > 1:1113152/1‑140 (MQ=255) aaaaGACTCAGCTGAGAAGCTGAGAC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTg < 1:1810722/140‑1 (MQ=255) aaGACTCAGCTGAGAAGCTTAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTggg < 1:3094930/140‑1 (MQ=255) aaGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTggg < 1:2813595/140‑1 (MQ=255) aaGACTCAGCTGAGAAGCTGAGTC‑TTATTTTGTGTATTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTCTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTggg < 1:4516661/140‑1 (MQ=255) aGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGc > 2:3535541/1‑140 (MQ=255) aGCTGAGAAGCTGAGTC‑TTTTGTTGTGTTTTGTATGGTAAAGCGGCCGCTGTATTTTTTGTCTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCg > 2:2186527/1‑140 (MQ=255) aGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGc < 2:2241533/140‑1 (MQ=255) aGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATGTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGc < 1:194559/140‑1 (MQ=255) cTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTTTCTTTTTGTTTTTTTTTCTTTACCCGGTGAAAATTGTATTTTACCGTTTTCAGCCGGTCTTGTGTTTTTTGGGCAATACGGTGGTGGCAt > 1:3633183/1‑140 (MQ=255) cTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTTACTTTTTGTTTTTTTTTCTTTCCCGGGTGAAAAGTGGATTTTCCCGTTTTAAGCCGTTCTTCTGTTTTTTTGGCAATAAGGTCGTGGCAt > 1:2292476/1‑140 (MQ=255) cTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGAGTTTTTCTTTTTTTTTCTTTCCCGGGTGAAAACTGAATTTTCCCGTTTTCAGCCGTTGTTCTGTTTTTTTGGGAATCCGGTCGTGGCAt > 2:3265834/1‑140 (MQ=255) cTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTATTTTTTTTGCTGTACCGGGTGAAAAGTTAATTTTCCCGTTTTAAGCCGGTCATATGTTTTTTGTGCAAACAGGTCGTTGCAt > 2:2686773/1‑140 (MQ=255) gAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGTCTTTTTGTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTc > 2:1477791/1‑140 (MQ=255) gAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTTTCCCGGGTGAAAAGTGAATTTTACCTTTTTCAGCCGTTCTTCTGTTTTTTTGGCAATCCGGTCGTGGCAttg > 2:4931245/1‑139 (MQ=255) gAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTACCGGGTGACAAGTGAATTTTCCCGTTTTGAGCCGTTGTTCTGTTTTTTGGGCAATCCGGGCGTGGccata > 2:1966266/1‑136 (MQ=255) gAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCGGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTc < 2:2558085/140‑1 (MQ=255) aGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTGTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTcc < 2:3609428/140‑1 (MQ=255) aGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATGTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTcc < 2:1087519/140‑1 (MQ=255) aGTC‑TTTTTTTGTGTGTTGTAGGGTAAAGCGGCCGCTTTATTTTTGGACTTTTTCTATTTTTTGCTGTCCCGGGTGAAACGTGAATTGTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTcc < 2:2813734/140‑1 (MQ=255) tC‑TTTTTTTGTTTTTTGTTTGGTAAACCGGCCGATTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTg < 2:1677750/140‑1 (MQ=255) tC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTg < 1:2386747/140‑1 (MQ=255) c‑TTTTTTTTTGTTTTGTAGGGTACAGCGGCCGCGTTATTTTTTGACTTTTTCATTTATTTGCTGTCCCGGGTGAAAAGTGAATTGTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTgg < 2:4625915/140‑1 (MQ=255) c‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTgg < 1:2686773/140‑1 (MQ=255) c‑TTTTTTTGTGTTGTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTGTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTgg < 1:3265834/140‑1 (MQ=255) tttttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGc < 2:343048/140‑1 (MQ=255) ttttttttGTTTTTTATTGTAAAGCGGCCTCTTTATTTTTTGACTTTTTTTTTTTTTTGCTGTCCCGTTTGAAAAGTGAATTTTCACTTTTTCATCCGTTATTCTGTTTTTTGGGCAATCCGGTCGTTTCATTCCTGGca < 2:4004866/140‑1 (MQ=255) ttttttGTGTTTTGTATGGTAATGCGGCCGCTTTTTTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGca < 1:954866/140‑1 (MQ=255) ttttttGTGTTTTGTATGGTAACGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCGGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGca < 2:1742589/140‑1 (MQ=255) ttttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGca < 2:1834628/140‑1 (MQ=255) ttttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGca < 1:3995087/140‑1 (MQ=255) ttttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGca < 1:2556928/140‑1 (MQ=255) ttttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCCTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGca < 2:437638/140‑1 (MQ=255) ttttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGATGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGca < 1:72182/140‑1 (MQ=255) ttttttCTGTTGTGTCTGGGAAACCCGCCGCTTTATTTTTTGACTTGTTGTTTTTTTTGCTGTCCCGGTTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATACCTGGca < 2:3577598/140‑1 (MQ=255) ttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGcaca < 2:4088120/140‑1 (MQ=255) ttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGcaca < 1:1091137/140‑1 (MQ=255) ttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGcaca < 2:1443649/140‑1 (MQ=255) ttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTGTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGGTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGcaca < 2:4664278/140‑1 (MQ=255) tttGTGTTTTGTATGGTAAAGAGGCCTCTTTATTTTTTTACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCATTTTTCAGCAGTTCTTCTGTTTTTTGGGCAATGCGGTCGTGGCATTCCTGGCACat < 1:636908/140‑1 (MQ=255) tttGTGTTTTGTATGGGACAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTGTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACat < 1:2989507/140‑1 (MQ=255) ttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 1:22383/140‑1 (MQ=255) ttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 2:485539/140‑1 (MQ=255) ttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 1:266487/140‑1 (MQ=255) ttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 2:3404240/140‑1 (MQ=255) ttGGGTTTTGTAGGGTAAAGCGGCCGCGTTATTTTTTGACTGTTTCTCGTTTTGGCTGTCCCGGGTGAACAGTGAATTTGCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTCGCATTCCTGGCACata < 1:426449/140‑1 (MQ=255) gtgtgTTTTGTATGGTACAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 2:4884472/139‑1 (MQ=255) tgtgTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACatat < 2:1539661/140‑1 (MQ=255) tgtgTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACatat < 2:123007/140‑1 (MQ=255) tgtgTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACatat < 2:1209980/140‑1 (MQ=255) tgtgTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTGCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACatat < 2:266560/140‑1 (MQ=255) ttttGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATAtatgt < 1:1769581/140‑1 (MQ=255) ttttGTATGGTAAAGCGGCCGCGTTATTTTTTTACTTTTTCTTTTTTTTTCTTTCACCGGTGAAAAATGAAATTTAACCTTTTAAGCCCTTATTATTTTTTTTTGTGAAAACGGTAGTTGCATTACATGCACaaataatt > 1:4652102/1‑137 (MQ=255) ttttGTATGGTAAAGCGGCCGCGTTATTTTTTGACTTTTTCTTTTTTTTTATGTCCCGGGTGAAAAGTGAAATTTACCGATTTAAGCCGTTCTTATTTTTTTTTGGCAAACCGGTCGTTGCATTCCTGGCACataaaatt > 1:2149071/1‑135 (MQ=255) tttGTATGGTAACGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATAtatgta < 2:4528678/140‑1 (MQ=255) tAAAGCGGCCGCTTTATTTTTTGCCTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTggg < 2:1164254/140‑1 (MQ=255) tAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGACAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTggg < 2:34703/140‑1 (MQ=255) tAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTggg < 2:3843706/140‑1 (MQ=255) tAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTggg < 2:229526/140‑1 (MQ=255) tAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGGCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTggg < 2:4571381/140‑1 (MQ=255) tAAAGCGGCCGCTATATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAAGTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTggg < 2:3326870/140‑1 (MQ=255) aaaGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTGGGc < 1:4958822/140‑1 (MQ=255) aaaGCGGCCGCTTTATTTTTTGACTTTGTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATGTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTGGGc < 1:667439/140‑1 (MQ=255) aGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTACCGTTTTAAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTGGGCgg > 2:132894/1‑140 (MQ=255) aGCGGCCGCTTTAGTTTTTTTCTTTTTGTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGGTGTTCTTTTTTTTGGGCAATCCGGTCGTGGCATTACTGGCCCAAATATGTATGGAGTTGGCgg > 2:3787242/1‑140 (MQ=255) aGCGGCCGCGTTATTTTTTTACTTTTT‑GTTTTTTTGGTGTCCCGGGTGAAAAGTGAATTTTCACGTTTTCAGCCGTTGTTCTGTTTTTTTGGCAAACCGGGAGTGGCAATCCTGGCACAAATAAGTATTGATTGGGGGGt > 1:1529150/1‑140 (MQ=255) cGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTTTCCCGGGTGAAAAGTGAATTTTACCGTTTTCAGCCGTTCTTCTGTTTTTTTGGCAATCCGGTCGTGGCATTCCGGGCACCTATATGTATGGATTTGGCGGtt > 2:2377079/1‑140 (MQ=255) | TGATCGTCGCTGCGCTGATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTC‑TTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGACTTTTTCTTTTTTTTGCTGTCCCGGGTGAAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTGGGCGGTT > NZ_CP034943/1514717‑1514986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |