| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,217,702 | A→C | 7.3% | L161L (CTT→CTG) | sigO ← | RNA polymerase sigma factor SigO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,217,702 | 0 | A | C | 7.3% | 642.3 / 21.1 | 216 | L161L (CTT→CTG) | sigO | RNA polymerase sigma factor SigO |
| Reads supporting (aligned to +/- strand): ref base A (59/138); new base C (7/11); total (67/149) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 220 total aligned reads displayed.
TCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAGCTTCTGAATCGCTTGGT > NZ_CP034943/3217565‑3217841 | tCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAg < 2:2209462/140‑1 (MQ=255) tGATCATCGTTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGcc < 2:1062787/140‑1 (MQ=255) atcatcGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCt > 2:1256266/1‑140 (MQ=255) atcatcGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑GTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCt > 1:1836352/1‑140 (MQ=255) tGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATg < 2:1709823/140‑1 (MQ=255) aaaaGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGaa < 2:1088720/140‑1 (MQ=255) aGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGt < 2:4348374/140‑1 (MQ=255) aGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGt < 2:394977/140‑1 (MQ=255) cATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTg > 2:4223592/1‑140 (MQ=255) tCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCACACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGt < 2:1754692/140‑1 (MQ=255) tCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGt < 2:2152199/140‑1 (MQ=255) tGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGc < 1:610827/140‑1 (MQ=255) tGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGc < 1:1074809/140‑1 (MQ=255) gTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGcc > 2:1121471/1‑140 (MQ=255) gTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGcc > 2:64623/1‑140 (MQ=255) ctCAATGTCATAAGTCTCGTCTTTTTGTTTCTTTTTTTGTTCAAACTGGCCGTCCACAGCTTACTTTTCCCCCTTTTTTTGCGCCGCTAACTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTTGGAGATGtttt > 2:208527/2‑140 (MQ=255) ctCAATGTCATAAGTCTCGTCTTTTTGTTTCTTTTTTTGTTCAAACTGGCCGTCCACAGCTTACTTTTCCCCCTTTTTTTGCGCCGCTAACTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTTGGAGATGtttt > 2:2557222/2‑140 (MQ=255) ctCAATGTCATAAGTCTCGTCTTTTTGTTTCTTTTTTTGTTCAAACTGGCCGTCCACAGCTTACTTTTCCCCCTTTTTTTGCGCCGCTAACTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTTGGAGATGtttt > 2:1630596/2‑140 (MQ=255) ctCAATGTCATAAGTCTCGTCTTTTTGTTTCTTTTTTTGTTCAAACTGGCCGTCCACAGCTTACTTTTCCCCCTTTTTTTGCGCCGCTAACTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTTGGAGATGtttt > 2:2626778/2‑140 (MQ=255) ctCAATGTCATAAGTCTCGTCTTTTTGTTTCTTTTTTTGTTCAAACTGGCCGTCCACAGCTTACTTTTCCCCCTTTTTTTGCGCCGCTAACTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTGGGAGATGtttt > 2:1014108/2‑140 (MQ=255) tCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCgg < 1:4852965/140‑1 (MQ=255) tCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCgg < 1:2085339/140‑1 (MQ=255) tCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCgg < 2:2666841/140‑1 (MQ=255) tCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCgg < 1:4094431/140‑1 (MQ=255) tCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCgg < 2:3011704/140‑1 (MQ=255) tCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCACAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCgg < 1:381033/140‑1 (MQ=255) cAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCggg > 2:3732280/1‑140 (MQ=255) cacgTCAACTTTATCGTCGTTTTGGCTC‑‑‑TTGTGTTCAAACGGGCCGTTCACAGCGTAC‑TTTCCCCCCTGTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:2898497/137‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCACACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:2849047/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGt > 1:2955880/1‑130 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:1724359/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:1604096/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:4156595/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:482037/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:3424926/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:4486543/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:2426796/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:165536/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:3732280/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:2461051/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:757244/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:2062167/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TGTCCCCCTTTGTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:4499168/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTACAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:3216717/140‑1 (MQ=255) aaTTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCt > 2:783515/1‑140 (MQ=255) aaTTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCt > 2:3823874/1‑140 (MQ=255) aaTTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCt > 2:4954738/1‑140 (MQ=255) aaTTGAGCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCt < 1:4183483/140‑1 (MQ=255) aTCGTCTTTTTGGTTC‑‑‑TTTTGTTCAACCTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCGAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGa < 1:2888146/140‑1 (MQ=255) aTCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGa < 1:620352/140‑1 (MQ=255) aTCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGa < 1:3851735/140‑1 (MQ=255) aTCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGa < 1:3738380/140‑1 (MQ=255) atttttGGTTC‑‑‑TTTTGTTCAAACTGGCCTTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCgg < 2:1177682/139‑1 (MQ=255) ttttGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCa < 1:1373374/140‑1 (MQ=255) ttttGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCa < 1:4563439/140‑1 (MQ=255) ttttGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCa < 2:1609239/140‑1 (MQ=255) ttttGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCa < 2:1287807/140‑1 (MQ=255) tC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGGTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCtt > 1:3855382/1‑140 (MQ=255) tC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCtt > 1:2548105/1‑140 (MQ=255) tC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCtt > 2:4715563/1‑140 (MQ=255) c‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTg < 2:557379/140‑1 (MQ=255) c‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTg < 1:1121471/140‑1 (MQ=255) gTTCAAACTGGCCGTTCACAGCTTCC‑TGTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCg < 2:321592/140‑1 (MQ=255) gCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:837806/98‑1 (MQ=255) gCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATg < 2:1976153/140‑1 (MQ=255) gCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATg < 2:1381512/140‑1 (MQ=255) tCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGAt > 2:1764587/1‑140 (MQ=255) gCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACt > 2:4433924/1‑140 (MQ=255) aC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCg > 2:1210890/1‑140 (MQ=255) aC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCg > 2:3103604/1‑140 (MQ=255) cccccTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGACTCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGc > 1:1863838/1‑140 (MQ=255) cccccTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGc < 1:3027089/140‑1 (MQ=255) ccccTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCa < 1:2248877/140‑1 (MQ=255) ccccTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCa < 2:4846633/140‑1 (MQ=255) ccccTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCa < 2:3855382/140‑1 (MQ=255) ccccTTTTTGTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGTAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCa < 1:4021253/140‑1 (MQ=255) tttttttGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCt > 1:835140/1‑140 (MQ=255) ttGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCtttttt < 1:736230/140‑1 (MQ=255) ttGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCtttttt < 1:2320892/140‑1 (MQ=255) tGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCa > 1:2717133/1‑87 (MQ=255) gCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTgtcagtc < 2:1227900/140‑1 (MQ=255) acTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTTGGAGATGTTTTGTCGGGACTCCCCTAATGAATCTGCAATCTCCTGCATCGTGGCACCGTGAAGATAGACTTTCGTCAGCACACTTTTTTGTTTgtcagtc < 1:2626778/139‑1 (MQ=255) acTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTTGGAGATGTTTTGTCGGGACTCCCCTAATGAATCTGCAATCTCCTGCATCGTGGCACCGTGAAGATAGACTTTCGTCAGCACACTTTTTTGTTTgtcagtc < 1:1253867/139‑1 (MQ=255) acTGCTTTCTGATAGTCTCCAGCCCCGTTTTATGAATGTTGGAGATGTTTTGTCGGGACTCCCCTAATGAATCTGCAATCTCCTGCATCGTGGCACCGTGAAGATAGACTTTCGTCAGCACACTTTTTGGTTTgtcagtc < 1:1014108/139‑1 (MQ=255) tCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCAt > 1:510187/1‑92 (MQ=255) atatTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAGCTTCTGAAt > 1:3546876/1‑140 (MQ=255) atTCTCCAGCCCTTTTTTATGAACGCTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGACAGTCAGCTTCTGAATCg < 1:849281/140‑1 (MQ=255) atTCTCAAGCCCTTTTTTCTGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAGCTTCTGAATCg < 1:1615279/140‑1 (MQ=255) atTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAGCTTCTGAATCg < 1:1764587/140‑1 (MQ=255) atTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAGCTTCTGAATCg < 1:4248096/140‑1 (MQ=255) atTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAGCTTCTGAATCg < 1:2020296/140‑1 (MQ=255) atTCTCAAGACCTTTTTTATGTATGTTTGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGGACTCTTTTTTGTTTTTCAGTCAGCTTCTGAATCg < 1:4957565/140‑1 (MQ=255) agtcgcAAGCCCAGTTTTATGAACGCTGGAGATGTTGTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTACGTCAGCACGCTTTTTTGTTTGTCAGTCAGCTTCTGAATCg < 1:4336435/135‑1 (MQ=255) ttCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATg > 2:509434/1‑86 (MQ=255) ttCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATg < 1:509434/86‑1 (MQ=255) ttCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATg > 2:3603323/1‑86 (MQ=255) ttCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAGCTTCTGAATCGc > 1:3350997/1‑140 (MQ=255) ttCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAGCTTCTGAATCGc > 1:2283682/1‑140 (MQ=255) ttCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAGCTTCTGAATAGc > 2:3758841/1‑140 (MQ=255) ctcAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAGCTTCTGAATCGCtt > 2:4963402/1‑140 (MQ=255) | TCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAGCTTCTGAATCGCTTGGT > NZ_CP034943/3217565‑3217841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |