| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,319,761 | T→G | 7.2% | pseudogene (544/1292 nt) | EO946_RS17170 ← | arabinogalactan endo‑beta‑1,4‑galactanase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,319,761 | 0 | T | G | 7.2% | 743.2 / 7.6 | 296 | pseudogene (544/1292 nt) | EO946_RS17170 | arabinogalactan endo‑beta‑1,4‑galactanase |
| Reads supporting (aligned to +/- strand): ref base T (119/137); new base G (32/2); total (157/139) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.73e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 305 total aligned reads displayed.
AATACCTGGGTCTGTCTCCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGAATAATGAAAGTCGGCCAG > NZ_CP034943/3319625‑3319900 | aaTACCTGGGTCTGTCTCCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTGCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑a < 2:940383/140‑1 (MQ=255) aTACCTGGGTCTGTCTCCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCACTGTCGACGCCTTCCTTG‑at > 2:915864/1‑140 (MQ=255) aTACCTGGGTCTGTCTCCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCGTCCTTG‑ag > 2:4372897/1‑139 (MQ=255) tACCTGGGTCTGTCTCCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑atc < 1:2436523/140‑1 (MQ=255) ccTGGGTCTGTCTCCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑atcat < 1:3436349/140‑1 (MQ=255) ccTGGGTCTGTCTCCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑atcat < 1:253918/140‑1 (MQ=255) ggTCTGTCTCCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCttt > 2:4179157/1‑140 (MQ=255) ggTCTGTCTCCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTACGACCTGAACCATGCCAATGTCGACGCCATACATG‑ATCAGCttt > 2:4836643/1‑140 (MQ=255) ggTCTGTCTCCCTGACCGCGCGGCGTCCTTCATTAAATAATTGGCTCATTTACGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTGTCCTTTACGACCCGAACCATTCCAAAGACCACGCCATCCCGG‑atcatagtt > 1:2970205/1‑136 (MQ=255) tctgtctCCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCGTGCGTG‑TTCATCTTTTg > 1:2176171/1‑140 (MQ=255) tctcCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCGTCCTTG‑AGCATCTTTTGCAgg > 2:1053751/1‑140 (MQ=255) tctcCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCAGTTCCGACCTGAACCCTGCCCAGGTCGACGCCTTCCGTG‑ATCATCGTTTGCAgg > 1:4205738/1‑140 (MQ=255) tcCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCt < 2:2398962/140‑1 (MQ=255) tcCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCt < 2:4982092/140‑1 (MQ=255) ccTGACCGCTCGGCTTCCTTCATTATATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCttt < 1:4409171/140‑1 (MQ=255) ccTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCttt > 2:273428/1‑140 (MQ=255) ccTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCttt < 2:1969235/140‑1 (MQ=255) ccTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTGTCATGTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCCTGTTTTGCAGGCttt > 2:297354/1‑140 (MQ=255) tGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGt < 1:1874890/140‑1 (MQ=255) tGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGt < 2:2235845/140‑1 (MQ=255) aCCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTGTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGttt > 2:3073262/1‑140 (MQ=255) cgcgcgGGTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAAACAAGCCAAAGTCGACGCCTGACTTG‑ATCATATTTTGGAGGCTTTGtttag > 1:3995732/1‑138 (MQ=255) cgcgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTGATTTCCGACCTGAACCATGACAAATTCCACGCCTTCCTTG‑ATGATATTTTGCAGGCTTTTTTTCg > 1:1320822/1‑140 (MQ=255) cgcgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCAAGCCAAAGTCGACGCCTTCCTTG‑CTCAACTTTTTCAGGCTTTGTTTCg > 1:637094/1‑140 (MQ=255) cgcgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGAACAGAACCATGCCAATTTAGAAGCCTTCCGTG‑ATAATCTTTTTCAGTCTTTTTTTCg > 1:1002028/1‑140 (MQ=255) ggcgGCTTCCTTCATTAAATACTTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAACTGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCGTG‑ATCATCTTTGGCAGCCTTTGTTTCGta < 1:1036955/139‑1 (MQ=255) cgcgGCTTCCTTGATTATATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACGTGAACCATTCAAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGta < 1:3934318/140‑1 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAACTGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGta < 2:1876213/140‑1 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTGATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTTTTTCGta > 2:1474100/1‑140 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTGATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCGTG‑ATCATCTTTTGCAGGCTTTGTTTCGta > 2:3464691/1‑140 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGta > 1:3597621/1‑140 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGta < 1:2960437/140‑1 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGta > 2:3609142/1‑140 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGta < 2:4112675/140‑1 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGta > 2:443695/1‑140 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGta > 2:604673/1‑140 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGta > 2:475473/1‑140 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGta < 1:4179157/140‑1 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTGTGCAGGCTTTGTTTCGta < 2:1814244/140‑1 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAAACATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCGTTGTTTCGta > 2:252757/1‑140 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAAACATGCCAATGTAGACGCCTTCCTTG‑ATCAACTTTTGCAGGCTTTGTTTCGta > 2:2845304/1‑140 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCCACCTGAAACATGCCAATGTCGACGCCATCCGTG‑ATCATCGTTTTCAGGCTTTGTGTCGta > 1:967523/1‑140 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATATCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCAGATTTTGCAGGCTGTGTTTCGta > 2:4581372/1‑140 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTAATTTCCGACCTGAAACATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTTCAGGCTTTGTTTCGta > 2:4453887/1‑140 (MQ=255) cgcgGCTTCCTTCATTAAATAATTGGCTCACTGTCGCCCAATCGGTTGCACCTGCAAATGCCCCTGTCGTGTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGta < 2:4886847/140‑1 (MQ=255) cgcgGCTGCCTGCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCTTTTCCATTCCCACCTTAAACAAGCCCAAGTAGAAGCCCTCCGTG‑ATAATAATTTTCAGGCGTTGTTTCTta > 1:2605205/1‑140 (MQ=255) gcgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGGCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGtat < 2:1268118/140‑1 (MQ=255) cgGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGtata < 2:1372974/140‑1 (MQ=255) ccgCTGCCTTCACTAAATAATTGGCTCCTTGTCGCCCAATCGGTTTCACCTGCAAAGGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGtata < 2:3778581/138‑1 (MQ=255) tcATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTGTCAATTGCGACCAGAACCCAGCCAATTTACAAGCCTTCCGGGAAACAAATTTT‑CAGGGTTTGTTTGGTATAAACAAagag > 1:1927347/1‑140 (MQ=255) ttGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCACTGTCGACGCCTTCCGTG‑ATCATCTTTTGCAGGCGTTGTTTCGGATACTCATAGAGCTTTGtttttt > 2:4316350/1‑140 (MQ=255) ttGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAAGGTCGACGCCGTCCTTG‑AGGATCTTTTGCAGGGTTTGTGTCGTATACTCATAGAGCTTTGtttttt > 2:2566431/1‑140 (MQ=255) tGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTGATTTACGACCTGAACCATGCCAATGTCGACGCCTTGCGGG‑ATCCTGGTTTGCAGGCTGTGTGTGGTTTACTCAAAGAGCTTTGttttttt > 1:3647393/1‑140 (MQ=255) cATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCtt < 1:475473/140‑1 (MQ=255) cATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCtt < 1:1501966/140‑1 (MQ=255) gCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCt < 1:2658205/140‑1 (MQ=255) aaTCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGc < 1:3116149/140‑1 (MQ=255) aaTAGGGTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTGGTTTTTTTAGCTTCAAAGCTGAGc < 1:2122963/140‑1 (MQ=255) aTCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGcc < 2:845290/140‑2 (MQ=255) aTCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCt < 2:321736/140‑1 (MQ=255) aTCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCAGAACCATGCCACTGTCGACGCCTTCCTTG‑ATCATCATTTGCAGGCATTGTTTCGTATACTCATAGAGCATTGTTTTTTGAGCTTCAAAGCTGAGcg < 2:4281957/140‑2 (MQ=255) tCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCtt < 1:2740089/140‑1 (MQ=255) tCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCGTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCtt < 1:2327617/140‑1 (MQ=255) tCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCGTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCGTTGTTTTTTTAGCTTCAAAGCTGAGCtt > 2:1563945/1‑140 (MQ=255) tttCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGcc < 1:1739851/140‑1 (MQ=255) tttCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTGAGCTTCAAAGCTGAGCTTCGcc < 1:4651175/140‑1 (MQ=255) tttCACCTGCAAATGCCCCTGTCGTTTAATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCCTAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGcc < 2:2605205/140‑1 (MQ=255) tCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCa < 2:4717585/140‑1 (MQ=255) gTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTg < 1:3535374/140‑1 (MQ=255) tCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCt > 2:3308161/1‑59 (MQ=255) tCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCt < 1:3308161/59‑1 (MQ=255) aTTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCAGCTTTTGCAGGGTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCGTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTGCTGTTTCGCAg > 2:1946930/1‑140 (MQ=255) tCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGAt < 1:60419/140‑1 (MQ=255) ccATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTAGACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGaaa < 1:4836643/140‑1 (MQ=255) cATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAAt < 1:3836829/140‑1 (MQ=255) cATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAAt < 1:161519/140‑1 (MQ=255) cATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAAt < 1:4975995/140‑1 (MQ=255) cATGCCAATGTCGACGCCGTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGGATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAAt < 1:1835772/140‑1 (MQ=255) tGCCAATGTCGACGCCTTCGTTG‑ATCAGCTTTTGCAGGCGTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCTGGATCGGCCCAGAAATCa > 1:205175/1‑140 (MQ=255) tGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCa > 2:702156/1‑140 (MQ=255) tGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCa > 2:1013677/1‑140 (MQ=255) tGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCa > 2:4335646/1‑140 (MQ=255) tGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCa > 2:1681112/1‑140 (MQ=255) gCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAg > 1:1662059/1‑140 (MQ=255) gCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCGGGTTCGCAGGATCGGCCCAGAAATCAg < 2:216878/140‑1 (MQ=255) ccAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCATTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGa < 2:227842/140‑1 (MQ=255) aTGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGaata > 2:1154080/1‑140 (MQ=255) aTGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTGTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTCCCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGaata > 1:115953/1‑140 (MQ=255) aTGTCGACGCCTGCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGaata > 2:3514177/1‑140 (MQ=255) aTGTCGACGCCTGCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGATTCGCCCAAGCTTTGGGTACCTACTGTTTCGCAGGATCGGCCCAGAAATCAGcata > 2:3582890/1‑140 (MQ=255) gACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGAATAATGaa > 1:4446195/1‑140 (MQ=255) cGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGAATAATGAAAg > 2:3319544/1‑140 (MQ=255) cGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGAATAATGAAAg > 2:2103517/1‑140 (MQ=255) ttG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGAATAATGAAAGTCGGCCAg < 1:4285948/140‑1 (MQ=255) ttG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGAATAATGAAAGTCGGCCAg < 2:3992100/140‑1 (MQ=255) ttG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGAATAATGAAAGTCGGCCAg < 2:3719873/140‑1 (MQ=255) ttG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGAATAATGAAAGTCGGCCAg < 2:3647393/140‑1 (MQ=255) ttG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGAATAATGAAAGTCGGCCAg < 2:1727639/140‑1 (MQ=255) ttG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTGAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGAATAATGAAAGTCGGCCAg < 1:827275/140‑1 (MQ=255) ttG‑ATCATCTTTGGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGAATAATGAAAGTCGGCCAg < 2:3911547/140‑1 (MQ=255) | AATACCTGGGTCTGTCTCCCTGACCGCGCGGCTTCCTTCATTAAATAATTGGCTCATTTTCGCCCAATCGGTTTCACCTGCAAATGCCCCTGTCGTTTCATTTCCGACCTGAACCATGCCAATGTCGACGCCTTCCTTG‑ATCATCTTTTGCAGGCTTTGTTTCGTATACTCATAGAGCTTTGTTTTTTTAGCTTCAAAGCTGAGCTTCGCCCAAGCTTTGGGTACCTTCTGTTTCGCAGGATCGGCCCAGAAATCAGAATAATGAAAGTCGGCCAG > NZ_CP034943/3319625‑3319900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |