| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,447,038 | T→G | 9.8% | N183T (AAC→ACC) | degU ← | two‑component system response regulator DegU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,447,038 | 0 | T | G | 9.8% | 394.3 / 8.1 | 197 | N183T (AAC→ACC) | degU | two‑component system response regulator DegU |
| Reads supporting (aligned to +/- strand): ref base T (71/99); new base G (4/23); total (75/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.41e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 200 total aligned reads displayed.
TCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTCGT > NZ_CP034943/3446899‑3447176 | tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGt < 2:281204/140‑1 (MQ=255) tcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATCATTTTTTGCAAAAAATTGCTCACATGGTTTTTAACGGTTTTATAACTGATAAACAATTATT‑AACCAAAACCCCGGTTg > 2:2823726/1‑140 (MQ=255) cTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGTTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGGTGCttttt < 2:1158176/140‑1 (MQ=255) cTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATCATTTTTTTCAAAAAATTGCTCACATGGTTTTTAAAGGTTTTCTCACTGATAAAAAAATATT‑AACCAATAACGCGGTTgggtctg > 2:45927/1‑134 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATATTGCTCACATTGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCCAAAACGCCGTTGCTTTTTcc > 2:814668/1‑140 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATATTGCTCACAAGGTTTTTCACGGTTTTCTAACTGTTAAACAATTATT‑CCACAATAACGCGGGTGCGTTTTcc > 2:2254495/1‑140 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTcc < 1:2683518/140‑1 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCAATTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAAAGATT‑AACCAATACCGCGGTTGCtttttac > 2:2585472/1‑138 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATAATTTTTTGCCAAATATTGCTCACATGGTTTTTAACGGTTTTCTCACTGATAAAAAATGATT‑CACCGATACCCCGGGTGCTTTTTcc > 2:267969/1‑140 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCATTTTTTGCAAAATATTTCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATAACGCGGTTGCTTTTTcc > 2:716878/1‑140 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCATTTTTTGCAAAAAATTGGTCACAAGGTTTTTCACGGTTTTGTCACTGATAAAAAATTATT‑GACCAAAAACCCGGTTTCTTTTTcc > 2:876150/1‑140 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAAATTAATTTTTTTCAAAAAATTTCTCACATGGTTTTTAACGGTTTTATGACTGATAAACAATTATT‑CACCAAAAACCCGGTTGCTTTTTcc > 1:2075382/1‑140 (MQ=255) cccAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACAATCATTTTTTTCAAAATATTTCGAACATGGTTTTTAACGGTTTTTTGACAGTGAAAAAAGTATTGCACC‑ATACCGCGGTTTCTTTTTACg > 1:798349/1‑140 (MQ=255) gCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTg < 2:905327/140‑1 (MQ=255) gCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGATTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTg < 2:2145621/140‑1 (MQ=255) ccATTTTTAATGGCGACCACAACTGCATGCGTACGGTCGTTTGCCGTCATTTTTTGCAAAAAATTTCACAAATGTTTTTTAACGGTTTTCTCAGTGATAAACAATTAGT‑AAACCAAAACGCGGTTTCTTTTTCGGTCTga > 2:342721/1‑139 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACGATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 1:2302183/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 1:1599933/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 2:2987689/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 1:1430398/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAAGACCGCGGTTGCTTTTTCCGTCTGCAAGc < 2:1177931/140‑1 (MQ=255) tttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTGTCACTGATAAACAATGATT‑AACCAAAAACGCGGTTGCTTTTTCCGTCTGCAAGCa > 2:10300/1‑140 (MQ=255) aTGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTg < 1:2689754/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 1:648393/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 2:2385085/140‑1 (MQ=255) cGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagc < 1:2951309/140‑1 (MQ=255) gACCCCCACGGCGGGCGTCCGGTCGTTTACAGTCATTTTGGGCCAAATAGTGCTCACCGGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGGTGCTTGTTCCGTCTGCAAGCATCTgcagca < 2:2706108/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagca < 2:2935533/140‑1 (MQ=255) cTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTg > 2:664897/1‑101 (MQ=255) cTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTg < 1:664897/101‑1 (MQ=255) tGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTAACGGTTTTGTCACTGATAAAAAATGATT‑CACCAATACCGCGGTTGATTTTTACGTCTTCAAACAAATGCAGCAATTAACATTCccg > 2:378860/1‑140 (MQ=255) tGCGTCCGGTCGTTTACAATCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTATCACTGATAAACAATGATT‑AACCAATACCGCGGTTGCTTTTTACCTCTTCAACCAAATGCAGCACTTAACATTcccc > 2:139793/1‑139 (MQ=255) cGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTGACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccgcc < 1:469950/140‑1 (MQ=255) ggTCGTTTATATTCATCTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGtt < 2:3089786/140‑1 (MQ=255) gTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTa < 2:3088421/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:378860/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:95620/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:239928/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 2:156505/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:139793/140‑1 (MQ=255) tttACATTCCTTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAAGGATT‑CACCACTACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAat < 2:1006302/140‑1 (MQ=255) tcattTTTTGTAAAATATTGCTGACATGGTTTTTAACGGTTTTATCACTGATAAAAAATGATT‑CACCAATACCGCGGTTGCTTTTTACGTCTGCAAGCATCTGCAGCACTTAAAATTACCGCCTAGTTAAAATATGTAAt > 2:396761/1‑140 (MQ=255) attTTTTGAAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATATACAAAGATT‑CAACAATACCGCGGTTGGTTTTTCCGTCTGCTAGCATCTGCAGCACTTCACATTCCAGCCGAGTTAAAATATGTAATgg > 2:1227178/1‑140 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:2004928/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 2:2316080/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTGTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 2:2070673/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:1634028/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 1:2089028/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 1:740254/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 1:821460/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 2:173960/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAAAGATT‑CACCAATACCGCGGTCGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 2:972586/140‑1 (MQ=255) aaTATTGCTCACATGGTTTGTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTAAAATATCTAATGGTCTGCGGAttt < 1:1293505/140‑1 (MQ=255) tatTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCa < 1:1459978/140‑1 (MQ=255) tCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAg < 2:2868613/140‑1 (MQ=255) cttgTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCAGTCTGCAAGCATCTGCAGCACTTCACATTCCAGCAGAGATAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:2169385/137‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 2:2753442/1‑140 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:420530/1‑140 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:2777356/1‑140 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:2524838/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 2:420530/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:117726/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:1727841/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:2823726/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAACTCCGCGGTTGCTTTTACCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGCCCt < 2:1489021/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCAATGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:245354/140‑1 (MQ=255) aTGCTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAAGACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 2:407158/140‑1 (MQ=255) ttttCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:1016913/1‑135 (MQ=255) ttttCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:1932456/1‑135 (MQ=255) ttttCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:1055503/1‑135 (MQ=255) ttttCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 2:1055503/135‑1 (MQ=255) ttttCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGc < 1:1368954/140‑1 (MQ=255) ttttCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGc < 1:2574304/140‑1 (MQ=255) ttCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTg < 2:798349/140‑1 (MQ=255) ttCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTg < 1:124785/140‑1 (MQ=255) ttCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTg < 1:3086782/140‑1 (MQ=255) cGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAggg < 2:2416336/140‑1 (MQ=255) cGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAggg < 1:926189/140‑1 (MQ=255) gTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGgtg < 1:1774907/140‑1 (MQ=255) gTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGGTGCTGTTTCCGTCTGCAAGCATCTGCAGCACTTCACCTTCCCGCCGAGTTAAAATAGGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGgtg < 1:1127669/140‑1 (MQ=255) tcACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGa < 1:189876/140‑1 (MQ=255) tcACTGATAAACAATGAGT‑CACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGa < 1:2453880/140‑1 (MQ=255) gATAAACAATGATT‑CACCACTACCGCGGTTGCTTTTTCCGTGTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAACTATGTAATGGTCTGCGGATTTCAGGATAGACCTCAGGCTGAGGGTGTGCAGAAACTc > 1:2286444/1‑140 (MQ=255) gATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTc > 1:2382312/1‑140 (MQ=255) gATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTc > 1:1561904/1‑140 (MQ=255) aaCAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCt < 2:1694625/140‑1 (MQ=255) tGATT‑CACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCttgttg < 1:397413/140‑1 (MQ=255) aTT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTACTGGTCTGCGGATTTCAGGATAGACCTCATGCTGCGGGTGTGCAGAAACTCCGCTTGTTGCa > 2:2459785/1‑140 (MQ=255) aTT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg > 1:2019242/1‑88 (MQ=255) aTT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCa > 1:872986/1‑140 (MQ=255) aTT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCCCTTGTTGCa > 2:571897/1‑140 (MQ=255) aTT‑CACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 2:2019150/88‑1 (MQ=255) cACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAgg > 1:1015215/1‑140 (MQ=255) cACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAgg > 1:2895396/1‑140 (MQ=255) cACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAgg > 2:1943260/1‑140 (MQ=255) cgGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATCGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTc > 2:1812978/1‑140 (MQ=255) cgGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTc > 1:1978241/1‑140 (MQ=255) cgGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTc > 2:3050053/1‑140 (MQ=255) cgGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTc > 1:2996251/1‑140 (MQ=255) cgGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTc > 2:1090215/1‑140 (MQ=255) | TCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATT‑CACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTCGT > NZ_CP034943/3446899‑3447176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |