BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP034943	2,991,252	0	C	A	26.8%	262.2 / 26.3	144	intergenic (+53/‑154)	gbsR/bslA	transcriptional regulator GbsR/biofilm‑surface layer protein BslA
Reads supporting (aligned to +/- strand): ref base C (23/78); new base A (37/0); total (66/78)
Fisher's exact test for biased strand distribution p-value = 4.39e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 145 total aligned reads displayed.

TACTATGATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTT  >  NZ_CP034943/2991119‑2991390

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTTAAACAAATTAAAACAAA‑ATAGCCTGGCAAACAGGGCGTTTTTTTGTTATTTTTTATTT‑AATT‑ACT‑Aaaaa                                                                                                                                       >  2:2452614/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTTTTT‑AAAT‑AAT‑ACaaa                                                                                                                                       >  2:508713/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATGT‑AATT‑AAT‑Aaaaa                                                                                                                                       >  2:361701/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTTATTTTTTATTT‑TATT‑AAT‑Aaaaa                                                                                                                                       >  2:1129935/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTTTTTTTTTTTTT‑AATT‑AAT‑Aaaaa                                                                                                                                       >  1:503242/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTTTTT‑TATT‑AAA‑ACaaa                                                                                                                                       >  1:1006945/1‑140 (MQ=255)

 aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATTT‑AATT‑AAT‑AAAAAt                                                                                                                                      >  2:123290/1‑140 (MQ=255)

 aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTT‑ACTT‑AGT‑ACAAAt                                                                                                                                      >  2:2682348/1‑140 (MQ=255)

 aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTTTGT‑TATT‑AAT‑Aaaaaa                                                                                                                                      >  1:3395718/1‑139 (MQ=255)

 aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑AAAAAt                                                                                                                                      >  2:2893778/1‑140 (MQ=255)

      taTTGGCTGAAACGGCTTGCTG‑ATGGGTGCCAGAGCGGTTAAATTTTTAAATTTATACCGATTGAACAAAAGTAAAAAAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGaa                                                                                                                                <  1:2753198/139‑1 (MQ=255)

       aTTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACA‑AGaaaaattaaa                                                                                                                                >  2:3274895/1‑133 (MQ=255)

       aTTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTTTTT‑AATT‑ATG‑AAAAAT‑TTGaaa                                                                                                                               >  2:2965847/1‑140 (MQ=255)

        ttGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTATTTTTTTTTT‑AATT‑TAT‑ACAAAA‑TTGaaaa                                                                                                                              >  2:2174262/1‑140 (MQ=255)

           gCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTGTTTTGT‑AATT‑ACT‑ACAAAA‑TTTAAAAATa                                                                                                                           >  2:3055693/1‑140 (MQ=255)

           gCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTGTTTTGTTCTTTTTTTTGT‑TATT‑AGT‑AACAAT‑TTTaaaaaga                                                                                                                           >  2:2804957/1‑138 (MQ=255)

           gCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTTTTT‑AATT‑AAT‑AAAAATATTTaaaaaa                                                                                                                            >  2:2721780/1‑139 (MQ=255)

           gCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGT‑AATT‑ACA‑ACAAAA‑ATTaaaaaaa                                                                                                                           >  2:497499/1‑138 (MQ=255)

           gCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGGTCTTTTTTTTGT‑AATT‑TAG‑ACAAAA‑TTTTAAAATa                                                                                                                           >  2:3294811/1‑140 (MQ=255)

           gCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAAAAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATTT‑AATT‑AAT‑AAAAAT‑ATTaaaaaaa                                                                                                                           >  2:861314/1‑138 (MQ=255)

           gCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGCGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGT‑AATT‑AAT‑ACAAAA‑TTGaaaaaaa                                                                                                                           >  2:571904/1‑138 (MQ=255)

               aaaCGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGAGTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTCTTTTTTATGT‑AAAT‑AGT‑AAAAAA‑TTGAAAAATAAggg                                                                                                                       >  2:1512209/1‑140 (MQ=255)

                 agaccgtGCTGAATCGGTG‑CTGAGGGGGTAATTTTTTAATTTTATACCGATTGAAACAAAGTAAAAAAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGaa                                                                                                                     <  1:770031/134‑1 (MQ=255)

                 aCGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGT‑AATT‑AAT‑AAAAAT‑TTTAAAAATAAGGGaa                                                                                                                     >  2:1758167/1‑140 (MQ=255)

                     cTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTT‑AATT‑ACT‑AAAAAT‑TTTAAAAATACGGGaaaaaa                                                                                                                 >  2:3166129/1‑139 (MQ=255)

                       tGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACAt                                                                                                               <  2:1013521/140‑1 (MQ=255)

                        gcttattCGGTG‑CCGAGCGGGTAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAAAAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATc                                                                                                              <  1:469555/134‑1 (MQ=255)

                             atgggTG‑CAGCGCGGGTAAATTTTTAAATTTATACCGATTTAAAAAAAGTAAAAAAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCAtt                                                                                                         <  1:123290/137‑1 (MQ=255)

                             atcttgg‑CAGATCTGGTAAATTTTTAAATTTATACCTATTGAAACAAATTAAAACAAA‑AACGCCTGGGAAACCGGGCTTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCAtt                                                                                                         <  2:1406234/134‑1 (MQ=255)

                             aTCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCAtt                                                                                                         <  2:2346292/140‑1 (MQ=255)

                              tCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGGTTTTTATTT‑AAAT‑AAT‑ACAAAT‑TTGAAAAATTCGGGAAAAAAATCCCAttt                                                                                                        >  2:458499/1‑140 (MQ=255)

                                 gTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTTCTTTTTTATGT‑AAAT‑AAA‑AAAAAA‑TTTAAAAAAAAGGGAAAAAAATACCATTTaaa                                                                                                     >  2:665243/1‑138 (MQ=255)

                                 gTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTT‑AATT‑ACT‑ACAAAT‑TTTTAAAATAAGGGGAAAACATAACATTTaat                                                                                                     >  2:1539175/1‑138 (MQ=255)

                                 gTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGT‑AATT‑ACT‑ACACAT‑TTTAAAAATAAGGGAAAAACATACCCGTTACt                                                                                                     >  2:2859944/1‑140 (MQ=255)

                                  tG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATTT‑AATT‑ACT‑AAAAAA‑TTTAAAAATAAGGGAAAAAAATACCaactgtct                                                                                                    >  2:770031/1‑133 (MQ=255)

                                  tG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTGTTTTCTTTTTTGTGTGATTT‑AAA‑AAAAAT‑TTTAAAAATAC‑GGCAAAACATCCCagattctt                                                                                                    >  1:2619213/1‑133 (MQ=255)

                                     cAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTCTTTTTTATTT‑AATT‑ACT‑ACAAAA‑TTTTAAAATAAGGGAAAAAAATCACAATTACttac                                                                                                  >  2:2659325/1‑138 (MQ=255)

                                      agagCGGGGAAATTTTTAAATTCATACCGATTGAAACAAAGTAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCa                                                                                                 <  1:1339769/140‑1 (MQ=255)

                                             ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTTTTTTTTTTTT‑TATTAAAA‑AAAAAT‑TTTAAAAAAAGGGGAAAAA‑ATACCAGTTAATTCCaaaaaagt                                                                                          >  1:1611009/1‑136 (MQ=255)

                                             ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTTTGT‑TATT‑AATCAAAAAT‑TTTAAAAAAAC‑GGACAAAAATACCATTTAATTGCAAAAGAtt                                                                                          >  1:213745/1‑140 (MQ=255)

                                             ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGT‑AATT‑ACT‑AAAAAA‑TTTAAAAAAACGGGAAAAACATACCATTTACTTACAAAATAtt                                                                                          >  2:1619891/1‑140 (MQ=255)

                                             ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTCTTTTTTATGT‑AATT‑AGT‑ACAAAT‑TTGATAAATACGGGAAAAACTTCACAGTTTGTTCCAAACTAtt                                                                                          >  2:3314807/1‑140 (MQ=255)

                                             ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTGTTGGTGTTTTTTTTTT‑TATT‑AAT‑TCAAAA‑TTTTAAAATAAGGGCAAAAAATCCCAATTTCATAGAAAATAtt                                                                                          >  1:3004476/1‑140 (MQ=255)

                                             ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGGTTTTGTTGTTTTTTAAGT‑AATT‑AAT‑ACAAAA‑TTTAAAAAAAATGGAAAAACATACCATTTAATTCCAAAATAtt                                                                                          >  2:2248718/1‑140 (MQ=255)

                                                   ttttAAATTTATACCGATTGAAAAAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                                    <  1:2435365/140‑1 (MQ=255)

                                                   ttttAAATGTAGCCCGATTGAAACAACGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAA‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                                    <  2:1348795/140‑1 (MQ=255)

                                                    tttAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGt                                                                                   <  1:2447216/140‑1 (MQ=255)

                                                             ataCCTATTTACACAAA‑CAACACAAACAACGCCTGGGAAACCGCGCGTTTATTTGTTCTTTTTTATGT‑CATT‑ACC‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTGGATGGTAATTTTATg                                                                          <  1:446841/140‑1 (MQ=255)

                                                             ataCCGATACAAACAAAGCAAAACAAA‑CACGCCTGGGAACCCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAA‑TTGAAAAATACGGGAACAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                                                          <  1:2676673/140‑1 (MQ=255)

                                                             aaaCCGATTCAAACAAACTAAAACAAA‑CCCGCCAGGGAAACCGGGCGTTTTTTTTTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATGTGATGGTAATTTTATg                                                                          <  1:43194/138‑1 (MQ=255)

                                                                  gATTTAAACAACGTAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                                     <  1:3101051/140‑1 (MQ=255)

                                                                  gATTGAAACAAAGTAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                                     <  1:1088082/140‑1 (MQ=255)

                                                                  gATTGAAACAAAGAAAAACAAA‑ACCGCCTGGGAAACCGGGCGGTTTTTTGTTCTTTTTTATGT‑TATT‑ACT‑ACAAAA‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                                     <  1:3331434/140‑1 (MQ=255)

                                                                  gATTGAAAAAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                                     <  1:2659325/140‑1 (MQ=255)

                                                                   aTTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTTTTTTTTTTTGT‑AATT‑AAA‑AAAAAA‑TTTTAAAATAAGGGAAAAAAAAACCCATTAATTGCAAAAAATTTTATGGTAATTTTATGTAgtga                                                                    >  2:933301/1‑137 (MQ=255)

                                                                   aTTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTTTTT‑AAAT‑ACA‑AAAAAA‑TTGAAAAATACGGGAAAAAAAAACCATTTACTTGAACAATATTTTTTTGTAATTTTTTGTAGGTa                                                                    >  2:1797781/1‑140 (MQ=255)

                                                                   aTTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGT‑AATT‑AAT‑AAAAAT‑TTTAAAAATAAGGGAAAAACATACCATTTACTTCCAAAAGTTTTGTTTGTAATTTTATGTAGGtt                                                                    >  2:2730686/1‑139 (MQ=255)

                                                                   aTTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGT‑TATT‑ACT‑ACAAAA‑TTTAAAAATAAGGGAAAAAAATCCGATTTAATTACAAAATAATTTATTGTAATTTTTTTTGGGTa                                                                    >  2:1802371/1‑140 (MQ=255)

                                                                   aTTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGGTGTTTTTTTTGT‑TATT‑AAT‑AAAAAA‑TTTTAAAATAAGGGGAAAAAAACAAAGTTAATTTGAAAAAATTTTTTGGTAATTTTATTTTGGtt                                                                    >  1:122849/1‑139 (MQ=255)

                                                                   aTTGAAACAAAGAAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTa                                                                    <  1:508713/140‑1 (MQ=255)

                                                                       aaacaaacAAAAACAAC‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                                <  1:1758167/140‑1 (MQ=255)

                                                                       aaaCAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                                <  2:122849/140‑1 (MQ=255)

                                                                             aGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATTT‑AAAT‑AAA‑AAAAAA‑TTTAAAAATAACGGAAAAAAAAACCATTTAATTACAAAAAATTTGATGGTAAATTTATGTATGTAAAATTTTTAt                                                          >  2:1308075/1‑140 (MQ=255)

                                                                                 acaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  2:1065048/138‑1 (MQ=255)

                                                                                 aaacaaa‑cACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  1:1305752/140‑1 (MQ=255)

                                                                                 aaacaaa‑cACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  2:552292/140‑1 (MQ=255)

                                                                                 aaaaaaa‑aACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAACTATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  1:1306122/140‑1 (MQ=255)

                                                                                 aaaCACA‑AACGCCTGGGAAACCGGGCTTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  1:1856888/140‑1 (MQ=255)

                                                                                 aaaCACA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  1:1742119/140‑1 (MQ=255)

                                                                                 aaaCAAC‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  1:3127785/140‑1 (MQ=255)

                                                                                 aaaCAAA‑AACGCCTGGGAACCCGGGCGTTTTTTTGTTCTTTTTTATGT‑AAGT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAACACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  2:2239407/140‑1 (MQ=255)

                                                                                 aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATTT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  2:377883/140‑1 (MQ=255)

                                                                                 aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  2:669826/140‑1 (MQ=255)

                                                                                 aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  2:754355/140‑1 (MQ=255)

                                                                                 aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  1:1445728/140‑1 (MQ=255)

                                                                                 aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  2:2250350/140‑1 (MQ=255)

                                                                                 aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  1:10587/140‑1 (MQ=255)

                                                                                 aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  2:439524/140‑1 (MQ=255)

                                                                                 aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACG‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                      <  2:2289731/140‑1 (MQ=255)

                                                                                  aaCAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTTTGT‑AAAT‑AAT‑ACAAAT‑TTTAAAAATACGGGAAAAAAAAACCAATTAAGTGCAAAATATTTTATTGTAATTTTATGTTGGTAAAATTTGTttttttg                                                     >  2:1742119/1‑137 (MQ=255)

                                                                                  aaCAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGGTGTTTTTTATGT‑AATT‑ACT‑AAAAAA‑TTGAAAAATACTGGAAAAACCTAGCATTTAGGTACACAAGATTTGATTGTAAATTTATGTTGGTATAATTTGGTTTTGGc                                                     >  2:3149479/1‑140 (MQ=255)

                                                                                       accaCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATG‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAACTATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGtt                                                 <  1:3025115/137‑1 (MQ=255)

                                                                                       aacaCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGtt                                                 <  1:2239529/137‑1 (MQ=255)

                                                                                       aacaCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGtt                                                 <  1:665243/137‑1 (MQ=255)

                                                                                          aCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                                              <  2:853036/140‑1 (MQ=255)

                                                                                          aCGCCTGGGAAACCGGGCGTGTTTTTTGTGTTTTTTTTTT‑AAAT‑AAT‑AAAAAT‑TTTTAAAATAAGGGAAAAAAATGCCATTTAATTCAAAAAAATTTTTTTTTAATTTTATGTTTGTAAAAATTGTATTTTGCCGTTTag                                              >  2:2040515/1‑140 (MQ=255)

                                                                                            gCCTGGGAAACCGGGCTTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                            <  2:219393/140‑1 (MQ=255)

                                                                                            gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                            <  1:933301/140‑1 (MQ=255)

                                                                                            gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                            <  2:2002022/140‑1 (MQ=255)

                                                                                            gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                            <  2:141368/140‑1 (MQ=255)

                                                                                            gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                            <  2:2619213/140‑1 (MQ=255)

                                                                                            gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                            <  1:1619891/140‑1 (MQ=255)

                                                                                            gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                            <  2:3004476/140‑1 (MQ=255)

                                                                                            gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                            <  2:4062/140‑1 (MQ=255)

                                                                                                 ggAAACCGGGCTTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt                                       <  1:2495026/140‑1 (MQ=255)

                                                                                                           cGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                             <  2:2965009/140‑1 (MQ=255)

                                                                                                           cGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                             <  1:2461464/140‑1 (MQ=255)

                                                                                                           agTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑GTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                             <  2:923258/139‑1 (MQ=255)

                                                                                                                     ttCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTTAAAAATAAGGGAAAAAAATACCATTTACTTCCAAAAAATTTGATGGTAATTTTAATTAGGTAAAATTTGTATTTGGCCGTTAAGAGGCTGTGAAAAGCGGTCAGGCATGaa                   >  2:113789/1‑140 (MQ=255)

                                                                                                                                        act‑acAAAT‑TTGAAAAATACGGGAAACACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACttttt  <  1:271276/140‑1 (MQ=255)

TACTATGATTGGCTGAAACGGCTTGCTGAATCGGTG‑CAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGT‑AATT‑ACT‑ACAAAT‑TTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTT  >  NZ_CP034943/2991119‑2991390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`