| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,447,038 | T→G | 10.4% | N183T (AAC→ACC) | degU ← | two‑component system response regulator DegU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,447,038 | 0 | T | G | 10.4% | 506.9 / 8.6 | 283 | N183T (AAC→ACC) | degU | two‑component system response regulator DegU |
| Reads supporting (aligned to +/- strand): ref base T (95/143); new base G (6/38); total (102/181) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.71e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 302 total aligned reads displayed.
TCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTCGT > NZ_CP034943/3446899‑3447176 | tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTC‑AAAATATTTCTCACATGGTTTTTCACCGTTTTATCACTTATAAACAATGATTAAACAAAAACGCGGt > 2:1041336/1‑140 (MQ=255)tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTC‑AAAAAATTTCTCACATGGTTTTTCACCGTTTTCTCACTGATAAACAATTATTAACCAATACCCCGGt > 1:856647/1‑140 (MQ=255)tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGt > 2:3234363/1‑140 (MQ=255)tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTAACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGt > 2:1799289/1‑140 (MQ=255)tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAAATTTTTTC‑AAAATATTGCTCACAAGGTTTTTCACGGTTTTCTAAATGATAAACAATGATTCAACCATACCGCGGt > 2:4131108/1‑140 (MQ=255)tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTCATTTTTTGC‑AAAATATTTCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTAACCAAAACACCGGt > 2:3305010/1‑140 (MQ=255)tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGt > 2:519223/1‑140 (MQ=255) ctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCGCCAATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGtt > 2:828858/1‑140 (MQ=255) ctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGACGTTTACAGTCATTTTTTGA‑AAAATATTGCTCACATGGTTTTTAACGGTTTTCTCACTGATAAACAATGATTAACCAAAACCGCGGtt > 2:2639621/1‑140 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACCTTCATTTGTTGC‑AAAAAATTGTGCACAAGGGTTTTCACCGTTTTGTCACTTATAAACAAAGATTAACCAAAACCCCGGGTGCtg > 1:4047016/1‑139 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTG‑AAAAAATTTATCACAAGTTTTTTAACCGTTTTATAAGTTTTTAAAAATTATTAACCAAAAACGCGGTTgggt > 1:890291/1‑137 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATCATTTTTTTC‑AAAATATTGCTCACATTGTTTTTCACGGTTTTATCACTGATAAACAATGAATCACCAATACCGCGGTTGCtttttgc > 2:3532946/1‑138 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTGTAACTGATAAACAATTATTCAACAAAACCGCGGTTGCTTTTTCCGTCt > 2:459679/1‑140 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCt > 2:4188654/1‑140 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACAATAATTTTTTTCAAAAATATT‑ATAACCTGGTTTTTAACGGTTTTATAACTGATAAACAAACATAAAACCAAACAGCGCTTGCtttttaagact > 1:2519094/1‑134 (MQ=255) ccATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGc > 2:4235478/1‑140 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 2:2386286/140‑1 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 1:4226373/140‑1 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 1:3164032/140‑1 (MQ=255) aTTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCaa < 1:1317011/140‑1 (MQ=255) aTTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCaa < 1:2028702/140‑1 (MQ=255) aTTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCaa < 1:816173/140‑1 (MQ=255) aTTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCaa < 1:1820691/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCCCGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 1:1810781/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 1:3978147/140‑1 (MQ=255) tttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACAAGGTTTTTCACGGGTTTGTCACTGATAAACAATGATTAACCAATAACGCGGTTGGTTTTTACGTCTGCAAGCa > 2:2172000/1‑140 (MQ=255) tAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATc < 2:3817632/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 1:1365849/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTC‑AAAATATTTCTCACATGGTTTTTCACGGGTTTCTCACTGATAAACAAAGATTCACCAATACCGCGGTTTCTTTTTCCGTCTGCAAGCATCTgcagca > 2:1893016/1‑140 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagca < 1:4088895/140‑1 (MQ=255) cacaCCCGCTTGCGTCCGCTCGTTTACATTCATTGTTTGC‑AAAAGATTGCTCACATGGTTGTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt < 2:646595/140‑1 (MQ=255) tGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 2:1397036/140‑1 (MQ=255) tGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 1:150054/140‑1 (MQ=255) tGCCTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 2:2359352/140‑1 (MQ=255) gCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCGCTTCACATTCccgc < 2:1424864/140‑1 (MQ=255) ccGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTGTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAg < 2:401255/140‑1 (MQ=255) ccGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAg < 2:1019265/140‑1 (MQ=255) cGGTCGTTTACATTCATTTTTTGC‑AAAAAAATTCTCACAAGGTTTTTCACGGTTTTATCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTACGGCTGCAAGCATATGCAGCACTTCACATTACCGCCGAGt > 2:1925900/1‑140 (MQ=255) tgTCTTTTACATTCATTTTTTGC‑AAAATATTGCTGACATGTTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACAGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACTTTCCCGCCGACtt < 1:4006256/139‑1 (MQ=255) ggTCGTTTACATTCATTTTTTGC‑AAAATATTTCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCCTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGtt > 2:3072555/1‑140 (MQ=255) ggTCGGTTACATTCATTTTTTTC‑AAAATATTGCTCACATGGTGTTTGACGGTTTTGTGACTGATAAAAAATGATTCACCAAAACCGCGGTTGCTTTTTACGTCTGCCAGCATCGGCAGCACTTGACATTCCCGCCCAggt > 2:1299705/1‑138 (MQ=255) gTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTa < 1:2109475/140‑1 (MQ=255) gTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTa < 2:745283/140‑1 (MQ=255) cGTTTAGATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:2349721/140‑1 (MQ=255) cGTTTACATTCATTTTTTGC‑ACAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 2:566249/140‑1 (MQ=255) cGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 2:3379675/140‑1 (MQ=255) cGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:1783567/140‑1 (MQ=255) cGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:4131108/140‑1 (MQ=255) cGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 2:303996/140‑1 (MQ=255) cGTTTACATTCATGTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 2:722224/140‑1 (MQ=255) tttACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAat < 1:3749528/140‑1 (MQ=255) attTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATgg > 2:534458/1‑140 (MQ=255) tGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:2172000/140‑1 (MQ=255) tGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:4039625/140‑1 (MQ=255) tGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:2704245/140‑1 (MQ=255) tGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 2:1633384/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 2:71521/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 2:1204982/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 1:4255297/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 2:2519094/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 1:459679/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 2:2125481/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCACCGAGTTAAAATATGTAATGGTCTGCGGAttt < 2:1520580/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 1:950842/140‑1 (MQ=255) tCACATTGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAg < 2:2894942/140‑1 (MQ=255) aTGTTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTGCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:3301654/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:1031500/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:791519/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:675105/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:517032/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:3721158/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:3073731/1‑140 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:1935543/1‑140 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:2268714/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGGTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:1883978/1‑140 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTGGCTCTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 2:1814033/140‑1 (MQ=255) aTGGTTTTTCACGGTTGTCTCACTGATAAAAAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:2775031/140‑1 (MQ=255) ggTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCa < 2:2936487/140‑1 (MQ=255) tCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGa < 2:3760201/140‑1 (MQ=255) aCGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAgg > 2:2721877/1‑140 (MQ=255) aCGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAgg > 2:1696221/1‑140 (MQ=255) cGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAggg < 1:2927299/140‑1 (MQ=255) tctcACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCa < 1:2877871/140‑1 (MQ=255) tcACTGATAAACAATGATTCACCAATACCTCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGa < 1:1078853/140‑1 (MQ=255) gATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTc > 2:2290285/1‑140 (MQ=255) gATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTc > 1:524144/1‑140 (MQ=255) gATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTc > 1:3816998/1‑140 (MQ=255) gATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTc > 1:1256058/1‑140 (MQ=255) tGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATCGACCTCCTGCTGAGGGTGTGCAGAAACTCCGCttgttg > 1:2441746/1‑140 (MQ=255) tGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 2:2443542/1‑107 (MQ=255) tGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 2:888012/1‑107 (MQ=255) aTTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 2:2043186/1‑105 (MQ=255) aTTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCa > 1:2640785/1‑140 (MQ=255) aTTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCa > 1:2091879/1‑140 (MQ=255) aTTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAAATCCGCTTGTTGCa > 1:3889428/1‑140 (MQ=255) tCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTa > 1:1713269/1‑67 (MQ=255) cACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAgg < 1:3532946/140‑1 (MQ=255) cgGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTc > 2:3968780/1‑140 (MQ=255) cgGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTc > 1:3492731/1‑140 (MQ=255) cgGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAAAGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTc > 2:3441292/1‑140 (MQ=255) | TCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGC‑AAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTCGT > NZ_CP034943/3446899‑3447176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |