BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP034943	2,991,227	0	T	G	28.8%	341.4 / 75.8	223	intergenic (+28/‑179)	gbsR/bslA	transcriptional regulator GbsR/biofilm‑surface layer protein BslA
Reads supporting (aligned to +/- strand): ref base T (48/110); new base G (64/0); total (112/111)
Fisher's exact test for biased strand distribution p-value = 3.11e-25
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 233 total aligned reads displayed.

ATACGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCA  >  NZ_CP034943/2991091‑2991365

ataCGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGt‑tttt                                                                                                                                          >  2:1641970/1‑140 (MQ=255)

ataCGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGt‑gttt                                                                                                                                          >  2:1802217/1‑140 (MQ=255)

   cGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTtgtg                                                                                                                                       >  1:2808560/1‑140 (MQ=255)

   cGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATAGAAACAAAGTAAAACAAAAACGCCTGGGTAACCGGGCGg‑ttttttt                                                                                                                                       >  2:2690869/1‑139 (MQ=255)

     aGCAACTGGAAAGCTCTAACGCTTACTATGATGGGCTGAACCGGCTTGCTGACTCGGTGCAGCGCGGGGAAATTTTTAAATTTATCCCGATTCAAACAAAGTAACACAACAACGCCTGGGAAACCGGGCGT‑TTTTTTGtt                                                                                                                                     <  1:1001845/140‑1 (MQ=255)

     aGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGt‑ttttttttt                                                                                                                                     >  1:4225666/1‑140 (MQ=255)

     aGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGtt                                                                                                                                     >  1:1827443/1‑140 (MQ=255)

     aGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTCCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGtt                                                                                                                                     <  2:2146670/140‑1 (MQ=255)

     aGCAACTGGAAAGCTCTAAAGCTTACGATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTGTGTGtt                                                                                                                                     >  1:333213/1‑140 (MQ=255)

      gCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAACTTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGttg                                                                                                                                    >  2:3446433/1‑139 (MQ=255)

      gCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGttg                                                                                                                                    >  2:3446927/1‑139 (MQ=255)

      gCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTc                                                                                                                                    >  2:4072679/1‑140 (MQ=255)

          cTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTGTTTGTTGtttt                                                                                                                                >  1:2100506/1‑140 (MQ=255)

           tGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTTTTCttttt                                                                                                                               >  1:3761168/1‑140 (MQ=255)

              aaaGCTATAACGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGGGCAGCGGGGGTAAATTTTTAAATTTATACCGATTCAAACAAAGTAAACCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTAt                                                                                                                            <  1:700926/140‑1 (MQ=255)

               aaGCTCTAAAGCTTACTATGATTGGCTGAACGGGGTGGCTGAATCGGTGCAGAGCGGGTAAATTTTAAAATTTATACCGATTCAAAAAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATg                                                                                                                           <  1:1662198/140‑1 (MQ=255)

                 gCTCTAAAGATTACTATGATTGGCTGAAACGGCTTGCTGACTCGGTGCAGCGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTa                                                                                                                         <  1:3971612/140‑1 (MQ=255)

                 gCTATACAGCTTACTATGATGGGCTGAACCGGCTTGCTGAATCGGGGCAGAGCGGGCAAATTTTTAAATTTATACCGATTCAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTa                                                                                                                         <  1:3745034/140‑1 (MQ=255)

                  ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTATTTa‑a                                                                                                                       >  2:228634/1‑140 (MQ=255)

                   aaaaaaGGTTAATATGTTTGGCTTAAACGGGTTGCTGAACCGGTGCAGCGCGGGGAAATTTTTAAATTTATACCGTTTCAAAAAAAGAAAAACAAAAACGCCCGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑At                                                                                                                      <  1:3850776/137‑1 (MQ=255)

                     tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTTTTTTTTTTtt‑atta                                                                                                                    >  1:1907629/1‑140 (MQ=255)

                     tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGACTGGGAAACCTGGCGT‑GTTTTTGTTGTTTTTTATGtgagaa                                                                                                                     >  1:1648495/1‑135 (MQ=255)

                       aaGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTGTGTTGTTTTTTATGTA‑ATtaat                                                                                                                  >  2:4184186/1‑138 (MQ=255)

                            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTTTTCTTTTTTATGTA‑ATTACTACaaa                                                                                                             >  2:917361/1‑140 (MQ=255)

                            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTTTTTA‑ATTAATACaaa                                                                                                             >  2:1998373/1‑140 (MQ=255)

                            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTTTTTTTTTTTTTTTA‑ATTAATAaaaa                                                                                                             >  1:306423/1‑140 (MQ=255)

                            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTATTTATATTA‑TACaaa                                                                                                             >  1:1073592/1‑140 (MQ=255)

                            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATTTA‑ATTTATACaaa                                                                                                             >  1:2732192/1‑140 (MQ=255)

                            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTGTTTGTTATTTGTTATTTA‑ATTTCTAaaaa                                                                                                             >  1:3184374/1‑140 (MQ=255)

                            tACTATGATTGGATGAAACGGCTTGCTGAATCGGTGCAGCGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACCCGAGGGAAACCGCGCGT‑TTGTTGTTTCATGTTTAATTA‑ATAAcaacaat                                                                                                             >  1:2413925/1‑139 (MQ=255)

                             aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTTTTTT‑ATTAATAaaaaa                                                                                                            >  1:461419/1‑139 (MQ=255)

                             aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTATTTA‑ATTAGTACAAAt                                                                                                            >  2:2066134/1‑140 (MQ=255)

                             aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTGTGTTTTTTTTTTTGTT‑GTTAGTAGaaaa                                                                                                            >  1:3667961/1‑139 (MQ=255)

                                aTGTTTGGCTTAATCGGTTTGCTGAATCGGTGCAGAGCGGGTAAATTTTTAAATTTATACCGATTTAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTg                                                                                                         <  1:872480/140‑1 (MQ=255)

                                   aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTATTTA‑ATTACTACAAATTTGtaa                                                                                                      >  2:4012224/1‑140 (MQ=255)

                                       gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGTA‑ATTAATACAAATTTGTAAAATa                                                                                                  >  2:1071007/1‑140 (MQ=255)

                                         tGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGTA‑ATTAAAACAAAATTTAAAAATAcc                                                                                                >  2:1597764/1‑139 (MQ=255)

                                                 ctggCTGACACGGTCCAGAGCGGGGAAATTTTTAAATTTATACCCATGGAAACAAACAAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑CTTACTACAAATTTGAAAAATACGGGAAAAAc                                                                                        <  1:1163950/137‑1 (MQ=255)

                                                 cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTTTTTTTTTTTTTA‑TTTATAAAAAATTTAAAAAAAAAGGaaaaaa                                                                                         >  1:3698670/1‑140 (MQ=255)

                                                 cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATTTA‑AATACAAAAAATTTGAAAAATAAGGGaaaaaa                                                                                        >  2:629932/1‑139 (MQ=255)

                                                 cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGTA‑ATTAATACAAATTTTTAAAATACGGGAAAAAc                                                                                        >  2:4168844/1‑140 (MQ=255)

                                                 cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTTTTTTTTTGTA‑ATTAATACAAAATTTTAAAATAAAGGaaaaaa                                                                                        >  1:822288/1‑139 (MQ=255)

                                                 cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTGTTTGTTCTTTTTTTTTTA‑ATTACTAAAAAAGTGAAAAATAAGGGAAAAAc                                                                                        >  2:3849116/1‑140 (MQ=255)

                                                          tCGGTCCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCAttt                                                                               <  1:4018999/140‑1 (MQ=255)

                                                             gTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTA‑ATTACTAAAAAATTGAAAAAAACTGGCAAAACATCCCagatagt                                                                            >  1:3523125/1‑134 (MQ=255)

                                                              tGCAGAGCGGGGAAATTTTTAAATTTATACCGAGTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTGTTTGTTAGTTTTTATGTA‑ATTACATAAAATTTTTAAAATTCGGGGAAAACATCCCATTTAAtt                                                                           >  2:2233763/1‑140 (MQ=255)

                                                               gCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTATTTA‑ATTTATAAAAAATTTAAAAAAAGGGGAAAAAAAACCCAATTAGttg                                                                          >  2:3145247/1‑139 (MQ=255)

                                                                 atagCGGGTAAATTTTTAAATTTATACCTATTCAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCa                                                                        <  2:3707630/138‑1 (MQ=255)

                                                                  gagCGGGGAAATTTTTAAATTTATACCGATTGAAGCAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTGTGTTGTTTTTGATGTT‑ATTACTACCAATTTGAAAAATACGGGGAAAACCTCACATTTACTTCCaa                                                                       >  2:1884151/1‑140 (MQ=255)

                                                                       gggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTTTA‑ATTTCTACAAATTTGTAAAATACGGGAAAAACATACCAGTTTCTTGCAAAaaat                                                                  >  2:3390367/1‑140 (MQ=255)

                                                                        ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAATCGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTGTTTGTT‑ATTAATTCAAATTTTAAAAAAAAGGGTAAAACAAACCATGTTATTGCAAAATAtt                                                                 >  1:4066554/1‑140 (MQ=255)

                                                                        ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTTTTTA‑ATTAGTACAAATTTTTAAAATACGGGAAAAAAATACCAGTTTCTTGCAAAAAAtt                                                                 >  2:2663215/1‑140 (MQ=255)

                                                                        ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTGTGTTATTTTTTATTTA‑ATTAAAACAAAATTGAAAAATAACGGAAAAAAATCACAATTACATACaaaaattt                                                                 >  2:728329/1‑136 (MQ=255)

                                                                        ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TGTTTTTTTGTTTTTTATTTA‑ATTACTAAAAAATTTAAAAAAAAGGGCAAAACATACCAGTTTCTTCCAAAATAtt                                                                 >  2:2563769/1‑140 (MQ=255)

                                                                        ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GTTTTTTTTTTGTTTTTTTTA‑ATTTAAAAAAAATTTAAAAAAAAAGGAAAAACAAACCAATTAATTGAaaaaaaat                                                                 >  1:1613393/1‑136 (MQ=255)

                                                                          aaaTTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAAAAACCCATTTACTTCCAAAATATTTg                                                               >  2:1842806/1‑140 (MQ=255)

                                                                             tttttAATTTTATCCCGATTGAAACAACGTAAAACAAACCCGCCTGGGACACCGGGGGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAACACATCCCATTTACTTCCAAAATATTTGATg                                                            <  2:1774262/140‑1 (MQ=255)

                                                                             tttttAAATTTATACCGATTGAAAAAAACTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATg                                                            <  2:4241683/140‑1 (MQ=255)

                                                                              ttttAAATTAAAACCGATTGAAAAACAGGAAAACACAACCGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGGA‑ATTACTACAAATTTGAAAAATACGGCAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                           <  1:1343931/140‑1 (MQ=255)

                                                                                        ataCCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTATTTTTTATTTA‑AATAAAAAAAATTTTAAAAAAAAAGGAAAAAAATAAAATATAAATACAAAATATATTAAGTTAATTatatt                                                 >  2:3208709/1‑139 (MQ=255)

                                                                                        ataCCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GGTTTTGTTGTTTTTTATGTT‑ATTAATAAAAAATTTAAAAAAAATGGAAAAAAAACCCAATTAATTACAAAAAAATTGATTGTAAttttttt                                                 >  2:1752396/1‑137 (MQ=255)

                                                                                            ctaTTGAAAAAAAGTAAAACAACAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAgg                                             <  1:4024543/138‑1 (MQ=255)

                                                                                             taTTGAAACAAAGTAACACAAACACGCCTGGGAACCCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAATTTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                            <  2:2808560/139‑1 (MQ=255)

                                                                                             gtttGAAACAATGTAAAACTAAAAGGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAACTATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                            <  2:539517/138‑1 (MQ=255)

                                                                                              aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑GGTTTTGTTTTTTTTTATGTA‑ATTAATAAAAAATTTAAAAAAAAGGGAAAAAAAAACCCATTAAGGCAAAAAAATTTGATGTTAATTTTATGTatgga                                           >  2:1244137/1‑136 (MQ=255)

                                                                                                  aaaaaaATTAAAAAAACAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                       <  1:417783/140‑1 (MQ=255)

                                                                                                  aaaaaaAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                       <  1:3209671/140‑1 (MQ=255)

                                                                                                  aaaCAAATTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTATTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                       <  2:1691947/140‑1 (MQ=255)

                                                                                                  aaaCAAAGTAAAACAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                       <  2:1190857/140‑1 (MQ=255)

                                                                                                  aaaCAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                       <  2:938324/140‑1 (MQ=255)

                                                                                                            aaacaaacACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                             <  2:2007580/140‑1 (MQ=255)

                                                                                                            aaacaaacACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                             <  1:629932/140‑1 (MQ=255)

                                                                                                            aaaCACAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                             <  1:3610586/140‑1 (MQ=255)

                                                                                                            aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                             <  2:2254298/140‑1 (MQ=255)

                                                                                                            aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                             <  2:536075/140‑1 (MQ=255)

                                                                                                            aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                             <  1:2272572/140‑1 (MQ=255)

                                                                                                            aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                             <  1:2676319/140‑1 (MQ=255)

                                                                                                            aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                             <  2:1021488/140‑1 (MQ=255)

                                                                                                            aaaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTGGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                             <  2:605003/140‑1 (MQ=255)

                                                                                                             aaCAAAATCGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATGTA‑ATTACTACCAATTTGTAAAATACGGGAAAAACATCCCCTTTTCTTCCAAAATATTTGTTGGTAATTTTTTGTAGGGACAAGTTTTGTTTggg                            >  2:3993282/1‑139 (MQ=255)

                                                                                                             aaCAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTTTTATTTTTTATTTA‑ATTAATAAAAAAATGAAAAATAAGGGAAAAAAATCCCAATTTATTACAAAAAATTTTTTTGTAATTTTATGTAGGTAAAATTTTTTTTTgga                            >  2:4197965/1‑139 (MQ=255)

                                                                                                               cAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCg                          <  2:3557573/140‑1 (MQ=255)

                                                                                                               aaaaaaCGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCg                          <  2:306423/139‑1 (MQ=255)

                                                                                                                 aacccGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGtt                        <  1:1752396/136‑1 (MQ=255)

                                                                                                                    aCGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                     <  1:2135849/140‑1 (MQ=255)

                                                                                                                      gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                   <  1:2877748/140‑1 (MQ=255)

                                                                                                                      gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                   <  1:1572354/140‑1 (MQ=255)

                                                                                                                      gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                   <  2:2908564/140‑1 (MQ=255)

                                                                                                                      gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                   <  1:31101/140‑1 (MQ=255)

                                                                                                                      gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                   <  2:3667961/140‑1 (MQ=255)

                                                                                                                      gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                   <  1:556205/140‑1 (MQ=255)

                                                                                                                      cccTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTAGAAAAATACGGGAAAAACATCCCAGTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                   <  2:1471947/139‑1 (MQ=255)

                                                                                                                                ccGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa         <  1:1244137/140‑1 (MQ=255)

                                                                                                                                ccGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa         <  1:4086245/140‑1 (MQ=255)

                                                                                                                                ccGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa         <  1:4116502/140‑1 (MQ=255)

                                                                                                                                     ctt‑ttttttGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg    <  2:242566/138‑1 (MQ=255)

                                                                                                                                     cGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg    <  1:1443048/140‑1 (MQ=255)

                                                                                                                                     cGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg    <  2:822288/140‑1 (MQ=255)

                                                                                                                                      tt‑ttttttGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGc   <  2:139612/139‑1 (MQ=255)

                                                                                                                                       t‑ttttttGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCa  <  1:2563769/140‑1 (MQ=255)

ATACGAGCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTA‑ATTACTACAAATTTGAAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCA  >  NZ_CP034943/2991091‑2991365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`