| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,446,980 | G→T | 14.7% | S202R (AGC→AGA) | degU ← | two‑component system response regulator DegU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,446,980 | 0 | G | T | 14.7% | 745.8 / 36.6 | 342 | S202R (AGC→AGA) | degU | two‑component system response regulator DegU |
| Reads supporting (aligned to +/- strand): ref base G (93/186); new base T (60/2); total (153/189) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.04e-22 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 354 total aligned reads displayed.
AAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAT > NZ_CP034943/3446843‑3447119 | aaaCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCt < 2:150951/140‑1 (MQ=255) aaCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTCTACGATCTCATTTCTACCCAGCCATTTTTAATGGCGACCCCAACGGCTTGCGTCCGGTCG‑TGTACATTAATTTTTTTCAAAATAGTGGTc > 2:3181678/1‑140 (MQ=255) aaCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTCTCTCATTTCTAGCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TGTAAATTCATTTTTTGGAAAATATTGCTc > 2:2195363/1‑140 (MQ=255) aaCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTc > 1:4836435/1‑140 (MQ=255) gCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGt < 2:194901/140‑1 (MQ=255) ccTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TGTACATTAATTTTTTTCAAAATATTGCTCACATGGtt > 2:3258097/1‑140 (MQ=255) aaaaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCAc < 1:4606283/140‑1 (MQ=255) aaaaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCAc < 1:1787969/140‑1 (MQ=255) aaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACgg < 2:785661/140‑1 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 1:1213344/140‑1 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 1:3833281/140‑1 (MQ=255) gCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTTCTGACATTGTTTTTAACGGTTTtctc > 2:1798834/1‑140 (MQ=255) gCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtctc > 2:5008631/1‑140 (MQ=255) gCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTAACGGTTTtctc > 2:2965409/1‑140 (MQ=255) cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa < 1:2216089/140‑1 (MQ=255) cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa < 2:4382330/140‑1 (MQ=255) cccACTAAAAGGCAAGTCTCTTATTATCCTATCTCAGTTCTCCCCAGCCAGTTTTAATGGCGACCACACCGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa < 2:4444268/140‑1 (MQ=255) gTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGa < 2:3078283/140‑1 (MQ=255) gTAAAAGGCAAGTATATTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGa < 2:4331239/140‑1 (MQ=255) aaaacccAAGTCTCTTATTATACTATCTCATTTCTACCCACCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATa < 1:3035756/134‑1 (MQ=255) aaaaGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATa < 1:1433236/140‑1 (MQ=255) ggCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTTCAATCAATTTTTTCAAAAAATTGCTAACATGGTTTTTAACGGTTTTATAACTTATaaaaa > 1:4036427/1‑138 (MQ=255) ggCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACa < 2:3276529/140‑1 (MQ=255) cAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTAG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAAt < 2:374341/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 2:658873/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 2:4548841/140‑1 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTAAATAAATTTTTTG‑AAAAAATTTGTAACAATGTTTTTCACAGTTTTTTGACTTAAAAAAAATTAt > 1:734897/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTTCAAAATATTTCTCACATGGTTTTTCACGGTTTTATCACTGATAAACCATGAt > 1:5130479/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTTCAAAAAATTGATCACATTGTTTTTAAACGTTTTGTAACAGATAAAAAAAGAt > 1:1721293/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAAAGAt > 2:5171987/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTAATTTTTTTCAAAATATTTCTCACATGGTTTTTCACGGTTTTCTAAATTATAAAAAATGAt > 2:263372/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTAATTTTTTGCAAAAAATTTCTCAAATTGTTTTTCAACGTTTTATAACTGATAAAAAATTAt > 1:3692750/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTAAATTTTTTAAAAATATTTATAACAAGGTTTTTAACGGTTTTCTCACTTATaaaaaaatat > 1:300655/1‑136 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTAAATTCATTTTTTTCAAAAAATTTCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGAt > 1:806342/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TGTACATTAATTTTTTGCAAAATATTTCTCACATGGTTTTTCACCGTTTTATCACTGATAAACaaatat > 1:2357922/1‑136 (MQ=255) tctcTTATTATACTATCTCATTTCTCCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTACGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGAtt < 2:738471/140‑1 (MQ=255) tctcTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGAtt < 1:3573131/140‑1 (MQ=255) tctcTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGAtt < 2:283299/140‑1 (MQ=255) ttattaTACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCAcc < 1:3123511/140‑1 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTTCTAACAAGGTTTTTCAAGGTTTTGTCACTGATAAACAAAGATTCACCAATAcc > 2:3449254/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTTCTCACAAGGTTTTTAAAGGTTTTCTAACAGATAAACAAAGATTCACCAATAAAGCgg > 2:3123511/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTAAATTTTTTCAAAAAATTGCTCACAAGGTTTTTAACGGTTTTCTCACAGATAAAAAAAGATTTACCAATAAcgccg > 1:1895483/1‑138 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TGTACATTAAATTTTTTAAAAAAATTTCTAACATGGTTTTTAAACGTTTTATCACTTATAAACAATGATTCACCAAAAACGCgg > 1:2930638/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TGTACAATAATTTTTTTGAAAATATTTGTCACAAGGTTTTTAACCGGTTTGTCACAGAAAAAAAAAGATTAACCAAAAACGCgg > 1:125365/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TGTAAATTAATTTTTTTCAAAAAATTTCTAACAAGGTTTTTAAAGGTTTTGTCACAGATTAACAAAGATTCACCAAAAcatcgg > 1:3375905/1‑135 (MQ=255) tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTTCAAAAAAATTCTCACAATGTTTTTCACGGTTTTATCACTGATAAAAAAAGATTAACCAAAAACGCGGt > 1:4997627/1‑140 (MQ=255) tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TGTAAATTCATTTTTTTTAAAATATTTCTTACATGGTTTTTAAAGGTTTTATCAATTATAAAAAAAGATTAAACAAAAACCCGGt > 1:2838897/1‑140 (MQ=255) tcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTg < 2:1487323/140‑1 (MQ=255) tcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTAATTTTTTTCAAAATATTTCTCACATGGTTTTTAACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTg > 2:3806207/1‑140 (MQ=255) cATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTAACGGTTTTCTCACTGATAAAAAATGATTCAACAATAACGCGGtttc > 2:4598034/1‑138 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTAATTTTTTTCAAAATAATTCTCACAATGTTTTTAACGGTTTTATAACTGATAAACAAAGATTAAACAAAAACGCGGGTGGtt > 1:4142224/1‑140 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACCTTCAATTTTTTCAAAATAATTCGCACAATGTTTGTGACGGTTTTCTCACTTATAAAAAATGATTAACCAATACCGCGGTTGCtttttac > 1:2546485/1‑138 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTGGCTTTTTcc < 2:3619087/140‑1 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACAAGGTTTTTAAAGGTTTTGTCACTGATAAAAAATTATTAACCAAAACCGCGGTTTCtttttac > 2:1630634/1‑138 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCATGCGTCCGGTCG‑TTTACATTCATTTTTTTCAAAATATTGCTCACATGGTTTTTAACGTTTTTCTCACTTATAAACAATTATTCACCAAAACAGCGGTTGCtttttac > 2:3870176/1‑138 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTAAATTCATTTTTTTAAAAATATTTCGAACAAGGTTTTTCAAGGTTTTGTAACTGGTAAACAATGATTCAGCAATACCGCGGTTGCTTTTTCCGTCt > 2:4195389/1‑140 (MQ=255) gCCATTTTTAATGGCGAACACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTg < 2:964359/140‑1 (MQ=255) ccATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTTCTCAAATTGTTTTTAAAGGTTTTGTCACTGATAAAAAATGATTCACCAATAAAGCGGTTTCTTTTTACGTCTGc > 2:1735419/1‑140 (MQ=255) ccATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGc > 2:1349277/1‑140 (MQ=255) ccATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACAATCAATTTTTGCAAAATATTGCTCACAAGGTTTTTCACGGTTTTCTAACTGATAAACAAAGATTCACCAAAACAGCGGTTGCTTTTTCAGTCTGc > 2:1045322/1‑140 (MQ=255) ccATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TGTACATTCCTTTTTTGGAAAATATTTCTCACATGGTTTTTAACGGGTTTGTCACAGATAAACCAATATTCACCCATACCGCGGTTGCTTTTTGCGTCTGc > 1:2705944/1‑140 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 1:2085087/140‑1 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTGTCCGTCTGCa < 2:2088626/140‑1 (MQ=255) cATTTTTAAGGGCGACCACACCGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 2:3567830/140‑1 (MQ=255) ttttAATGGCGACCCCCACGCCTTGCCTCCGGTCG‑TTTACATTCATTTTTGGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCCCGGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 2:4104469/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 2:119993/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 1:1196030/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 1:3212593/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTgcag < 2:4036427/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGAtt < 1:964447/95‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagca < 1:146557/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagca < 2:1146821/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCG‑TTTACAGTCATTTTTTGGAAAATATTGGTCCCATGGTTTTTCACGGTGTTGTCACTGATAAACACTGATTCACCAATACCGCGGTTGGTTTTTGCGTCTGCAAGCATCGtcagcc > 1:4239534/1‑139 (MQ=255) aCCACAACGGCTTGCGTCCGGTCG‑TGTTCAATCATTTTTTTCAAAATAATTCTCACATGGTGTTTGACGGTTTTATCTAGTCTAAAAAATTATTGAACAAAAACCCGGTTGGTTTTTCAGGGTGGAAGCATCGGCAGCAc > 1:4655005/1‑140 (MQ=255) cacaACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt < 1:3246778/140‑1 (MQ=255) cacaACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt < 1:593702/140‑1 (MQ=255) cacaACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt < 1:4324157/140‑1 (MQ=255) aaaaggCGTGCGTCCGGTCG‑TTTACATTACTTTTTTGCAAAATATTGCTCAAATTGTTTTTCACGGTTTTCTCAATGATAAAAAATGATTCACCCATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTca < 1:5047295/136‑1 (MQ=255) cGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTTCTCACATGGTTTTTCACGGTTTTGTCACTGATAAACAATGATTCACCAAAACCCCGGTTGCGTTTTCCGGGTGCAAGCAACTGCAGCACGTCACAt > 2:80965/1‑140 (MQ=255) cGGCTTGCGTCCGGTCG‑TGTACATTAATTTTTTTCAAAAAATTTCTCACAAGGTTTTTGACGGTTTTGTCACTGATAAAAAAATATTCACCAAAAACCCGGTTGGTTTTTGCGTCTGCAATCAACTGCAGCAcataaaaa > 1:1981489/1‑133 (MQ=255) tGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 2:199686/140‑1 (MQ=255) tGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 2:1849072/140‑1 (MQ=255) tGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 2:5091170/140‑1 (MQ=255) cGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCAAGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccgcc < 2:2347676/140‑1 (MQ=255) tttACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCTCTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAat < 1:1547267/140‑1 (MQ=255) attctttTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTa < 1:4391275/140‑1 (MQ=255) cattTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATg < 2:4021187/140‑1 (MQ=255) attTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATgg > 2:914471/1‑140 (MQ=255) attTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATgg > 2:4740961/1‑140 (MQ=255) tttttGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTc > 1:4476034/1‑140 (MQ=255) tttttGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTc > 1:2281080/1‑140 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 2:3918295/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:2494405/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 2:3355016/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 1:1036082/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 1:1006488/140‑1 (MQ=255) gCTCACCTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAt < 2:2468203/140‑1 (MQ=255) gCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAt < 2:300655/140‑1 (MQ=255) gCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAt < 2:598107/140‑1 (MQ=255) gCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAt < 2:4979739/140‑1 (MQ=255) | AAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCG‑TTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAT > NZ_CP034943/3446843‑3447119 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |