| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | 2928129 = | 209 (0.820) | 3 (0.010) | 3/242 | NT | 1.5% | intergenic (‑89/+51) | alaP/asnB | alanine permease AlaP/asparagine synthase (glutamine‑hydrolyzing) |
| ? | NZ_CP034943 | = 2928125 | 197 (0.800) | intergenic (‑85/+55) | alaP/asnB | alanine permease AlaP/asparagine synthase (glutamine‑hydrolyzing) | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCTTTATGATCTGGCACAGCATTAATATCGAAAAACGGTATATGCCTGAAGAGCTGAGTCATCAGCCGAAAGAAGTCATCTTTGTGTAACAGACAACAAGGCTTTCGATTCGTCGAAAGCCTTGTTATTATCCTTTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP034943/2928269‑2928129‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttattTCTTCATCATCATTGATTTACCCAATCCACACGGAAAATTCAGAAAAATGATTTATTGATATTTTTTTCTAGGGGAGAAGAAAGCATGCAAAAACAAAAACAAGAGCTGCACCGCGGACTCGAAGAAAGGCATAT < NZ_CP034943/2928125‑2927991 ATCTTTATGATCTGGCACAGCATTAATATCGAAAAACGGTATATGCCTGAAGAGCTGAGTCATCAGCCGAAAGAAGTCATCTTTGTGTAACAGACAACAAGGCTTTCGATTCGTCGAAAGCCTTGTTATTATCCTTTTAT > 1:2975078/1‑140ATCTTTATGATCTGGCACAGCATTAATATCGAAAAACGGTATATGCCTGAAGAGCTGAGTCATCAGCCGAAAGAAGTCATCTTTGTGTAACAGACAACAAGGCTTTCGATTCGTCGAAAGCCTTGTTATTATCCTTTTAT > 1:3164597/1‑140ATCTTTATGATCTGGCACAGCATTAATATCGAAAAACGGTATATGCCTGAAGAGCTGAGGCATCAGCCGAAAGAAGTCATCTTTGTGTAACAGAAAACAAGGCTTTCGATTCGTCGAAAGCCTTGTAATTATCCTTTTAT > 2:1481680/1‑140 CTGAGCCATCAGCCTAAAGAAGTCATCTTTGTGTAACAGACAACAAGGCTTTCGAGTAGTCGAAAGCCTTGTTGTTATCCTTTTATTTCTCCATCATCATTGATTTACCCAATCCGTACGGAATATTCAGAAAAATGATa > 2:1698171/1‑139 AGCCTAAAGAAGTCATCTTTGTGTAACAGACAACAAGGCTTTCGAGTAGTCGAAAGCCTTGTTGTTATCCTTTTATTTCTCCATCATCATTGATTTACCCAATCCGTACGGAATATTCAGAAAAATGATATAATGATATT > 2:837151/1‑140 GTCATCTTTGTGTAACAGACAACAAGGCTTTCGAGTAGTCGAAAGCCTTGTTGTTATCCTTTTATTTCTCCATCATCATTGATTTACCCAATCCGTACGGAATATTCAGAAAAATGATATAATGATATTTTTTTCTAGGG < 1:1698171/140‑1 attcTTTCTTCCTCCTCATTGATTTACCCCATCCACACGGAAAATTCAGAAAAATGATTTATTGATATTTTTTTCTAGGGGAGAAGAAAGCATGCAAAAACAAAAACAAGAGCTGCACCGCGGACTCGAAGAAAGGCATA < 2:1547048/136‑1 TTATTTCTTCATCATCATTGATTTACCCAATCCACACGGAAAATTCAGAAAAATGATTTATTGATATTTTTTTCTAGGGGAGAAGAAAGCATGCAAAAACAAAAACAAGAGCTGCACCGCGGACTCGAAGAAAGGCATAT < 2:1518400/140‑1 ATCTTTATGATCTGGCACAGCATTAATATCGAAAAACGGTATATGCCTGAAGAGCTGAGTCATCAGCCGAAAGAAGTCATCTTTGTGTAACAGACAACAAGGCTTTCGATTCGTCGAAAGCCTTGTTATTATCCTTTTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP034943/2928269‑2928129‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttattTCTTCATCATCATTGATTTACCCAATCCACACGGAAAATTCAGAAAAATGATTTATTGATATTTTTTTCTAGGGGAGAAGAAAGCATGCAAAAACAAAAACAAGAGCTGCACCGCGGACTCGAAGAAAGGCATAT < NZ_CP034943/2928125‑2927991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |