| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,176,173 | 0 | G | T | 58.0% | 74.1 / 179.9 | 143 | G135V (GGT→GTT) | med | transcriptional regulator Med |
| Reads supporting (aligned to +/- strand): ref base G (36/24); new base T (46/37); total (82/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.47e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 156 total aligned reads displayed.
CTCTATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAACACA > NZ_CP034943/1176034‑1176312 | ctctATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCCGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATgg‑g > 1:38096/1‑140 (MQ=255)ctctATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATgg‑g > 1:1085686/1‑140 (MQ=255)ctctATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATgg‑g > 2:1489626/1‑140 (MQ=255) gCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑Gttttttt < 2:905828/140‑1 (MQ=255) gCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑Gttttttt < 2:885842/140‑1 (MQ=255) aTGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTgga < 2:1379748/140‑1 (MQ=255) aTGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTgga > 2:848743/1‑140 (MQ=255) tGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACTAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTggag > 1:1828722/1‑140 (MQ=255) tGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCCATGG‑TTTTTTTTggag > 2:1028309/1‑140 (MQ=255) tGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTgtag > 1:1072870/1‑140 (MQ=255) tGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTggag > 1:1087584/1‑140 (MQ=255) tGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTggag > 1:157852/1‑140 (MQ=255) ggAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTTggagg > 2:165271/1‑140 (MQ=255) aGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAAt < 2:979204/140‑1 (MQ=255) tGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGACTGa > 1:744741/1‑140 (MQ=255) aaTATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACa > 2:1382574/1‑140 (MQ=255) atatGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAg < 1:1874872/140‑1 (MQ=255) gCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGc > 1:701631/1‑140 (MQ=255) gCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGc > 1:361605/1‑140 (MQ=255) agGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCAt < 1:1224791/140‑1 (MQ=255) ggTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATc > 2:900667/1‑140 (MQ=255) gtgtTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGACTGACAGCTGCCCATCt > 2:244780/1‑140 (MQ=255) gtgtTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGAc < 1:526697/128‑1 (MQ=255) cTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGAc > 2:410468/1‑120 (MQ=255) ttGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGaaaa < 1:992248/140‑1 (MQ=255) ggTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGATTGTCCATTTAAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCACATCTGTCGAAAACGa > 2:1697299/1‑140 (MQ=255) ggTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGa > 1:944303/1‑140 (MQ=255) ggTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTATAATGCTAAAGCAAAAGCTGATAATGTGACGAGAGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGa > 2:1402237/1‑140 (MQ=255) ggTCAGAGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGa > 2:647075/1‑140 (MQ=255) tCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAAt > 2:231837/1‑140 (MQ=255) tCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAAt > 2:593957/1‑140 (MQ=255) tCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAAt > 2:655988/1‑140 (MQ=255) tCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAAt > 2:1884972/1‑140 (MQ=255) cGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAgg > 1:635063/1‑140 (MQ=255) gAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGt < 1:1422237/140‑1 (MQ=255) gAAGATTATCCAGATATGGAATCCCGCATTTCTACTGCTAAAGCAACAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGCAGCAATGG‑GTTTAATTGGAGCAATCACAGCTCCCCAACGGTCTCAAACGAATCAGGt < 2:466610/140‑1 (MQ=255) aTTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGc < 2:726899/140‑1 (MQ=255) aTTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGc < 2:1875886/140‑1 (MQ=255) aaaaatatatGGAATTCGTCATTTATAATTATAAAGAAAAAGCACATAAATTGACGAGTGTCCATTTCAGCGGCGAATAAATGT‑TTTTTTTTGGATGAATGAAAGATGCACATCTTTCGAAAACGAATCAGGTCTGCGtt > 1:1671909/7‑139 (MQ=255) tCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGa < 2:183099/140‑1 (MQ=255) tCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGa < 2:1212670/140‑1 (MQ=255) ccAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGAt > 2:590536/1‑140 (MQ=255) ccAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAAAGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGAt > 2:683889/1‑140 (MQ=255) aGATATGTAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTg < 1:1242242/140‑1 (MQ=255) aGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTg < 1:1833691/140‑1 (MQ=255) gATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGc < 1:412081/140‑1 (MQ=255) gATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGc < 2:568987/140‑1 (MQ=255) atatGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCt > 2:1851553/1‑140 (MQ=255) atatGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCt > 1:231551/1‑140 (MQ=255) gAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAAt > 1:1400573/1‑117 (MQ=255) gAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAAt < 2:1400573/117‑1 (MQ=255) ttCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTAc > 1:208565/1‑140 (MQ=255) cGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGt > 1:1530837/1‑140 (MQ=255) cGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGt > 1:727169/1‑140 (MQ=255) cTAATGCTAAAGCAAAAGCTTATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCg < 2:1481968/140‑1 (MQ=255) tAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAg < 1:1489626/140‑1 (MQ=255) accccAAACGCGGATCACGTGACGAGTGTCCATTTCAGCGGCGAAGCACTGG‑TGTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGa < 1:1227655/136‑1 (MQ=255) aaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTg < 1:269166/75‑1 (MQ=255) cAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGt < 2:1331018/140‑1 (MQ=255) aaGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGtttt > 2:1339255/1‑140 (MQ=255) aaGCTGATAATGTGACGAGTGTCCATTTAAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGAAAGATGCCCATCTGTCGAAAACGAAACAGGTCTGCGTGATTGCTTCATTTACTTGCCAGCCGGAGGTAGACGGtttt > 2:194217/1‑140 (MQ=255) aTAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCaaa > 2:550044/1‑140 (MQ=255) aTAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCaaa > 2:1216045/1‑140 (MQ=255) aTAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCaaa > 2:1149181/1‑140 (MQ=255) aTAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCaaa > 2:1462273/1‑140 (MQ=255) aTAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCaaa > 2:1462598/1‑140 (MQ=255) aTAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCaaa > 2:851219/1‑140 (MQ=255) tgACGAGTGTCCATTTCAGCGGCGAAGAAAGGG‑GTTTTTTTGGAGGAATCACGGCTGCCCATCTGACGAAAACGAATCAGGTCGGCGTGAGTGCTTCCTATACGTGGCAGCCGGAGGGAGACGGGTGTATCACAGGGGcc > 2:1912427/1‑140 (MQ=255) gACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCCTCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCa > 2:1644771/1‑140 (MQ=255) gACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCa > 1:1397541/1‑140 (MQ=255) tgtCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAg > 1:570982/1‑47 (MQ=255) tgtCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATg > 1:386519/1‑140 (MQ=255) tgtCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATg > 1:303459/1‑140 (MQ=255) tgtCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATg > 1:1286469/1‑140 (MQ=255) tgtCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATg > 1:1486249/1‑140 (MQ=255) tgtCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATg > 1:691957/1‑140 (MQ=255) tCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGt > 2:87912/1‑73 (MQ=255) tCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGt < 1:87912/73‑1 (MQ=255) tCCATTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGaa > 1:1877545/1‑140 (MQ=255) tCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGaa > 1:1889479/1‑140 (MQ=255) aTTTCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAAt < 1:1544342/140‑1 (MQ=255) ttCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATcc < 2:2051185/140‑1 (MQ=255) ttCAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATcc < 2:1365584/140‑1 (MQ=255) cAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCgg < 1:1884972/140‑1 (MQ=255) cAGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCgg < 1:655988/140‑1 (MQ=255) aGCGGCGAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGa > 2:1742874/1‑140 (MQ=255) cggcgAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGata > 1:1040164/1‑140 (MQ=255) cggcgAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGata > 1:1925242/1‑140 (MQ=255) cggcgAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGata > 2:1752675/1‑140 (MQ=255) cggcgAAGCAAAGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGata > 1:1951423/1‑140 (MQ=255) gcgAAGCAATGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGAtata < 2:182215/140‑1 (MQ=255) gcgAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGAtata < 2:361960/140‑1 (MQ=255) gCAATGG‑TTTTTGTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGt < 1:1851553/140‑1 (MQ=255) tGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAac < 2:701631/140‑1 (MQ=255) tGG‑TTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAac < 1:1824683/140‑1 (MQ=255) tgTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCATGTCGGCTTTATTGCTTACTTTACGTGTCAGCAGGATTTAGACTTTTTTATAAAAGGGGCCAATTATTATAATCATTATATAGAAGTCaagag < 2:1162327/139‑4 (MQ=255) gTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAAcaca < 2:1085686/140‑1 (MQ=255) gTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAAcaca < 2:208565/140‑1 (MQ=255) gTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAAcaca < 1:1462273/140‑1 (MQ=255) gTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAAcaca < 1:1365042/140‑1 (MQ=255) | CTCTATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGG‑GTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAACACA > NZ_CP034943/1176034‑1176312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |