BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP034943	2,991,236	0	C	G	40.6%	151.0 / 45.2	120	intergenic (+37/‑170)	gbsR/bslA	transcriptional regulator GbsR/biofilm‑surface layer protein BslA
Reads supporting (aligned to +/- strand): ref base C (9/54); new base G (43/0); total (66/54)
Fisher's exact test for biased strand distribution p-value = 3.84e-21
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 121 total aligned reads displayed.

GCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGG  >  NZ_CP034943/2991097‑2991363

gCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTc                                                                                                                                  >  2:1811155/1‑140 (MQ=255)

 cAACTGGAAAGCTATAACGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCCGCGCGGGGAAATTTTAAAATTTATCCCGATTCAAACAAAGAAACACAAAC‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCt                                                                                                                                 <  1:889525/140‑1 (MQ=255)

  aaCTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAAGCGGGCGG‑TTTTTTGTTCtt                                                                                                                                >  2:2147420/1‑140 (MQ=255)

  aaCTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTAtt                                                                                                                                >  1:535652/1‑140 (MQ=255)

   agtGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCttt                                                                                                                               <  2:1734223/138‑1 (MQ=255)

          aGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTATTTTTTATGt                                                                                                                        >  2:577956/1‑140 (MQ=255)

          aGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGt                                                                                                                        >  2:275906/1‑140 (MQ=255)

            ctctCAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TGTTTTGTTGTTTTTTATGTaa                                                                                                                      >  2:1613705/1‑140 (MQ=255)

            ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATTTaa                                                                                                                      >  2:1890590/1‑140 (MQ=255)

            ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTGTaa                                                                                                                      >  2:1324972/1‑140 (MQ=255)

            ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGttttttttttta                                                                                                                      >  1:1903605/1‑134 (MQ=255)

            ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTTTaa                                                                                                                      >  1:1493250/1‑140 (MQ=255)

              ctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTTTAAtt                                                                                                                    >  1:158329/1‑140 (MQ=255)

               tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑TCGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGTTAttt                                                                                                                   >  2:2059999/1‑139 (MQ=255)

               tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTATTttatta                                                                                                                   >  1:2284723/1‑140 (MQ=255)

               tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTTTTTTTTTTTAATta                                                                                                                   >  1:290967/1‑140 (MQ=255)

                      tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTTTTTAATTAATAaaaa                                                                                                            >  2:1850530/1‑140 (MQ=255)

                      tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTATTTAATTACTACaaa                                                                                                            >  2:1170309/1‑140 (MQ=255)

                      tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTATTTTTTATGTAATTAATACaaa                                                                                                            >  2:1850234/1‑140 (MQ=255)

                      tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTTTTTTATTAATAaaaa                                                                                                            >  1:2090291/1‑140 (MQ=255)

                      tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTTTTTTTTTTGTTAATAATAaaaa                                                                                                            >  1:14805/1‑140 (MQ=255)

                      tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTATTTAATAAATAaaaa                                                                                                            >  1:19144/1‑140 (MQ=255)

                      tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATGTAAATACTACaaa                                                                                                            >  2:2369181/1‑140 (MQ=255)

                      tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGGTGTTTTTTTTGTAATTAATACaaa                                                                                                            >  1:1205990/1‑140 (MQ=255)

                      tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAAACGGGCGT‑TTTTTTGTTGTTTTTTATTTAAATAATAaaaa                                                                                                            >  2:357947/1‑140 (MQ=255)

                       aCTCTGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTGTTTTTTTTTTTTTTTTTTATTAATAaaaaa                                                                                                           >  1:783800/1‑139 (MQ=255)

                       aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTTTTTTTTTTTTATTACTACAAAt                                                                                                           >  1:1531768/1‑140 (MQ=255)

                       aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTCTGTAATTACTACAAAt                                                                                                           >  2:2108361/1‑140 (MQ=255)

                       aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATGTAATTAATACaaaa                                                                                                           >  2:2035698/1‑139 (MQ=255)

                         tATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTCTTTTTTATTTAATTACTAAAAAttt                                                                                                         >  2:1065755/1‑140 (MQ=255)

                         tATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTATTTTTTATTTAATTAAAAAAAAttt                                                                                                         >  2:828133/1‑140 (MQ=255)

                         tATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTAATTAGTACAAAatt                                                                                                         >  1:142476/1‑140 (MQ=255)

                            gATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑aa                                                                                                     <  2:915300/140‑1 (MQ=255)

                            gATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑aa                                                                                                     <  2:915166/140‑1 (MQ=255)

                             aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTATTTAATTACTACAAAATTT‑aaa                                                                                                    >  1:2281400/1‑140 (MQ=255)

                              ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTAATTACTAAAAATTTT‑aaaa                                                                                                   >  1:128495/1‑140 (MQ=255)

                                 gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTAATTAATACAAATTTT‑AAAAATa                                                                                                >  2:327750/1‑140 (MQ=255)

                                 gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTTTAAAAAAAACAAATTTA‑AAAAATa                                                                                                >  2:1496381/1‑140 (MQ=255)

                                     aaaCGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTATGTAATTACTAAAAATTTG‑TAAAATACggg                                                                                            >  2:2093592/1‑140 (MQ=255)

                                       aCGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTGTGTTGTTTTTTTTGTTATTACTAAAAAATTT‑AAAAATAAGGGaa                                                                                          >  1:2012895/1‑140 (MQ=255)

                                         ggCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCTATTGAACCAAAGTAAAACAAAA‑ACCCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAAGTACTACAAATTTG‑AAAAATACGGGaaaa                                                                                        <  2:720525/140‑1 (MQ=255)

                                         ggCTTGCTGAATCGGTGCAGAGCCGGGAAATTTTTAAATTTATACCGATTTAAAAAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGA‑TTTTTTGTTCTTTTTTATGTAAGTACTACAAATTTG‑AAAAATACGGGaaaa                                                                                        <  2:721003/140‑1 (MQ=255)

                                           cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAAc                                                                                      <  1:605243/140‑1 (MQ=255)

                                           cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTGTAATTACTACAAAATTT‑TAAAATAACGGACAAAc                                                                                      >  1:2022610/1‑140 (MQ=255)

                                           cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGGTGTTTTTTTTGTAAATAGAAAAAATTTGTAAAAAAACGGCaaaaa                                                                                       >  1:445843/1‑140 (MQ=255)

                                            ttGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTGTAATTAAAACAAAATTG‑AAAAAAAAGGGgaaaaaa                                                                                     >  1:2793072/1‑138 (MQ=255)

                                             tGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TGTTTTGGTGATTTTTTTGTAAATAATAAAAATTTG‑AAAAAAAACGGaaaaaaaa                                                                                    >  2:1425971/1‑137 (MQ=255)

                                               cTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTTATTAATAAAAAAAAT‑AAAAATACTGGaaaaaaaaca                                                                                  >  1:1691981/1‑135 (MQ=255)

                                                           cgcggggggAAATTTTTAAATTTATACCGATTGAAACAACGTAAACAAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAACCATCCCATTTACTTCCa                                                                      <  1:344770/135‑1 (MQ=255)

                                                           agcgCGGGCAAATTTCAAAATTTAAACCGATTCAAACAAACTAACACAAAA‑ACGCCGGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCa                                                                      <  1:2438416/137‑1 (MQ=255)

                                                           agagCGGGGAAATTTTTAAATTTATACCGATTGAAAAAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCa                                                                      <  1:2035698/140‑1 (MQ=255)

                                                                  gtaaaTTTTTAAATTTATACCGATTGAAAAAAAGTAAAAAAAAA‑ACGCCTGGGAAACCGGGCGT‑CTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATAtt                                                               <  1:1034386/138‑1 (MQ=255)

                                                                  ggAAATTTTTAAATTTATACCGGTTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTCTTTTTTATTTTATTACTACCAATTTT‑AAAAATTCGGGAAAAAAATCCCAGTTACTTGCAAAATGtt                                                               >  2:2818005/1‑140 (MQ=255)

                                                                  ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTTTGTAAATACTACAAATTTT‑TAAAATAAGGGGAAAAAATCCCATTTACTTGCAAAATAtt                                                               >  2:384362/1‑140 (MQ=255)

                                                                  ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTTTTTAATTACTACCAATTTG‑TAAAATAAGGGAAAAACATCCCATTTAATTCCAAAATAtt                                                               >  2:2797176/1‑140 (MQ=255)

                                                                  ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTGTTTTTTGTAAATACTACAAATTTT‑AAAAATAAGGGAAAAAAAAGACAATTAATTACAAAATAtt                                                               >  2:1524849/1‑140 (MQ=255)

                                                                  ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTCTTTTTTATGTAATTACTAAAAATTTG‑TAAAATACGGGAAAAACATCCCATTTAGTTCCAAAAtttt                                                               >  2:2026476/1‑140 (MQ=255)

                                                                  ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATGTAATTAATACAAAATTG‑AAAAAAACGGGAAAAACATCCCATTTAATTCAAAAAAAtt                                                               >  2:1687221/1‑140 (MQ=255)

                                                                  ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTAGTTCTTTTTTATGTGATTACTACAAATTTG‑AAAAATAAGTGACAAACATACCAATTCAGTACAAAatata                                                               >  2:2639383/1‑139 (MQ=255)

                                                                     aaTTTTTAAATTTATCACGATTGAAACAAAGTAAAACAAAA‑AAGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGa                                                            <  2:779717/140‑1 (MQ=255)

                                                                       tttttAAATTTATACCTATTTAAAAAACTTAAAACAAAA‑ACGCCTGGGAAACCGGGATT‑TTTTTTGTTCTTTTTTATGTAATTACTACATATTTG‑AAAAATTGGGGATTAAGATCACATTTAATTCCTAAATAttgtatg                                                          <  2:1363073/140‑6 (MQ=255)

                                                                        ttttAAATTAATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                         <  1:266976/140‑1 (MQ=255)

                                                                        ttatAAATTTATACCGATTCAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                         <  1:2134997/137‑1 (MQ=255)

                                                                                  ataCCGATTTAAACAACGAAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTCCAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                               <  2:486253/140‑1 (MQ=255)

                                                                                         ttGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TGTTTTGTTCTGTTTTTTGTAATTACTACAAAATTG‑AAAAATACGGGGAAAAAATGCCAGTTTCTTCCCAAAGATTTGATTGTAATTTTTTGTAGGtga                                        >  2:885271/1‑138 (MQ=255)

                                                                                            aaacaaacAACAACACAA‑ACCCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATACCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                     <  1:1832056/140‑1 (MQ=255)

                                                                                              aCAAATTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAttt                                   <  2:1146771/140‑1 (MQ=255)

                                                                                                  aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGGTTTTTTTTTTTTTTTTTTTATTTATAAAAAATTTA‑AAAAAAAAGGGAAAAAAAACCAGTTTA‑TTACAAAAAATTTTTTTGTAATTTTTTTTTGGTGAAAttttttt                               >  1:652160/1‑136 (MQ=255)

                                                                                                  aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATTTAATTACTAAAAAATTT‑AAAAATAAGGGTAAAAAAAACCATTTAGTTACAAAATATTTGTTGGTAATTTTATGTTTGTAAAATTTTTAt                               >  2:1410815/1‑140 (MQ=255)

                                                                                                  aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGTAATTACTACAAATTTT‑AAAAATAAGGGAAAAACATCCCATTTACTTGCAAAATATTTTATGGTAATTTTATGTAGGTAAAATTTGTAt                               >  2:1983105/1‑140 (MQ=255)

                                                                                                  aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTGTTTTATTTTTTATGTAATTATGAAAAAATTT‑AAAAATAAGGGAAAAACATACCCTTTACTTCCAAAATATTTTATGTTAATTTTATTTAGTTAAAAttttttt                               >  2:2464142/1‑136 (MQ=255)

                                                                                                  aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TGTTTTTTTGTTTTTTATGTAATTACTAAAAATTTG‑TAAAATAAGGGAAAAACATCCCCTTTTATTCCCAAATATTTGTTTGTAATTTTATGTATGTGAAAttgtgtg                               >  2:1579105/1‑135 (MQ=255)

                                                                                                  aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATTTAATTAATACAAATTTG‑TAAAATAAGGGAAAAACATACCAATTAATTAAAAAAAATTTTATGGTAATTTTATTTAGGTaaaaataagta                               >  2:495376/1‑133 (MQ=255)

                                                                                                  aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATTTAATTAATACAAAATTT‑TAAAATAAGGGAAAAAAAACCCAATTTCTTCCAAAATATTTTATGGTAATTTTATTTAGGTAAAATTTGttt                               >  2:1455866/1‑138 (MQ=255)

                                                                                                  aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATTTAAATAATAAAAAATTT‑AAAAATAAGGGAAAAAAATACCATTTAATTACAAAAAATTTTATGGTAATTTTATTTAGGTAAAATTTTTAt                               >  2:1481878/1‑140 (MQ=255)

                                                                                                   caaacaCAAAA‑ACGCATGGGAAACCGGTCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTAtt                              <  1:2673038/135‑1 (MQ=255)

                                                                                                      aaacaaac‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  1:2797176/140‑1 (MQ=255)

                                                                                                      aaaaaaaa‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  2:1078721/140‑1 (MQ=255)

                                                                                                      aaaaaaaa‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  2:1558349/140‑1 (MQ=255)

                                                                                                      aaaaaaaa‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  2:14805/140‑1 (MQ=255)

                                                                                                      aaaCAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  1:1324972/140‑1 (MQ=255)

                                                                                                      aaaCAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  1:1850530/140‑1 (MQ=255)

                                                                                                      aaaCAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  2:1691981/140‑1 (MQ=255)

                                                                                                      aaaCAAAA‑ACCCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  2:127825/140‑1 (MQ=255)

                                                                                                       aaCAAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                           <  1:1850234/140‑1 (MQ=255)

                                                                                                                 gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                 <  2:19144/140‑1 (MQ=255)

                                                                                                                 gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                 <  1:384362/140‑1 (MQ=255)

                                                                                                                 gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                 <  1:2114675/140‑1 (MQ=255)

                                                                                                                 gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                 <  1:1481878/140‑1 (MQ=255)

                                                                                                                 cccTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                 <  2:188532/139‑1 (MQ=255)

                                                                                                                      tgAAAGCGTGCGT‑TTTTTTTTTCTTTTTTATTTAATTAATACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt            <  1:1687221/139‑1 (MQ=255)

                                                                                                                      gcaaaCCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACGTCCAAACTATTTGAGGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt            <  1:2279903/138‑1 (MQ=255)

                                                                                                                          aCCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaa        <  1:327750/140‑1 (MQ=255)

                                                                                                                           ccGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa       <  1:995597/140‑1 (MQ=255)

                                                                                                                           ccGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa       <  1:1613705/140‑1 (MQ=255)

                                                                                                                           ccGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa       <  1:1065755/140‑1 (MQ=255)

                                                                                                                                cGT‑TTTTTTGTTCTTTTTTATGTAATTACTACATATTTG‑AAAAATACGGGAAACACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg  <  2:2753451/140‑1 (MQ=255)

                                                                                                                                cGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AACAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg  <  1:1496381/140‑1 (MQ=255)

                                                                                                                                cGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg  <  1:503598/140‑1 (MQ=255)

                                                                                                                                cGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg  <  2:681692/140‑1 (MQ=255)

GCAACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGG  >  NZ_CP034943/2991097‑2991363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`