BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP034943	2,991,243	0	A	T	24.3%	239.1 / 25.7	116	intergenic (+44/‑163)	gbsR/bslA	transcriptional regulator GbsR/biofilm‑surface layer protein BslA
Reads supporting (aligned to +/- strand): ref base A (34/53); new base T (28/0); total (63/53)
Fisher's exact test for biased strand distribution p-value = 9.03e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 116 total aligned reads displayed.

AGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTA  >  NZ_CP034943/2991107‑2991381

aGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTATTTTTTATGt                                                                                                                                           >  2:577956/1‑140 (MQ=255)

aGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGt                                                                                                                                           >  2:275906/1‑140 (MQ=255)

  ctctCAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TGTTTTGTTGTTTTTTATGTaa                                                                                                                                         >  2:1613705/1‑140 (MQ=255)

  ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATTTaa                                                                                                                                         >  2:1890590/1‑140 (MQ=255)

  ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTGTaa                                                                                                                                         >  2:1324972/1‑140 (MQ=255)

  ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTTTaa                                                                                                                                         >  1:1493250/1‑140 (MQ=255)

    ctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTTTAAtt                                                                                                                                       >  1:158329/1‑140 (MQ=255)

     tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTATTttatta                                                                                                                                      >  1:2284723/1‑140 (MQ=255)

     tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTTTTTTTTTTTAATta                                                                                                                                      >  1:290967/1‑140 (MQ=255)

     tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAAAAAAA‑ACGCCTGGGAAAACGGGCGT‑TTTTTTGTTTTTTTTTATTttatta                                                                                                                                      >  2:1488302/1‑140 (MQ=255)

            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTTTTTAATTAATAa‑aaa                                                                                                                              >  2:1850530/1‑140 (MQ=255)

            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTATTTTTTATGTAATTAATAa‑aaa                                                                                                                              >  2:1832056/1‑140 (MQ=255)

            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTATTTTTTATGTAATTAATAC‑aaa                                                                                                                              >  2:1850234/1‑140 (MQ=255)

            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTTTTTTATTAATAa‑aaa                                                                                                                              >  1:2090291/1‑140 (MQ=255)

            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATGTAAATACTAC‑aaa                                                                                                                              >  2:2369181/1‑140 (MQ=255)

            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGGTGTTTTTTTTGTAATTAATAC‑aaa                                                                                                                              >  1:1205990/1‑140 (MQ=255)

            tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAAACGGGCGT‑TTTTTTGTTGTTTTTTATTTAAATAATAa‑aaa                                                                                                                              >  2:357947/1‑140 (MQ=255)

             aCTCTGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTGTTTTTTTTTTTTTTTTTTATTAATAa‑aaaa                                                                                                                             >  1:783800/1‑139 (MQ=255)

             aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGTAATTACTAC‑AAAt                                                                                                                             >  2:2105659/1‑140 (MQ=255)

             aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTTTTTTTTTTTTATTACTAC‑AAAt                                                                                                                             >  1:1531768/1‑140 (MQ=255)

             aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTCTGTAATTACTAC‑AAAt                                                                                                                             >  2:2108361/1‑140 (MQ=255)

             aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATGTAATTAATAC‑aaaa                                                                                                                             >  2:2035698/1‑139 (MQ=255)

               tATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTCTTTTTTATTTAATTACTAA‑AAAttt                                                                                                                           >  2:1065755/1‑140 (MQ=255)

               tATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTATTTTTTATTTAATTAAAAA‑AAAttt                                                                                                                           >  2:828133/1‑140 (MQ=255)

               tATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTAATTAGTAC‑AAAatt                                                                                                                           >  1:142476/1‑140 (MQ=255)

                  gATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑aa                                                                                                                       <  2:915300/140‑1 (MQ=255)

                  gATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑aa                                                                                                                       <  2:915166/140‑1 (MQ=255)

                   aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTATTTAATTACTAC‑AAAATTT‑aaa                                                                                                                      >  1:2281400/1‑140 (MQ=255)

                    ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTAATTACTAA‑AAATTTT‑aaaa                                                                                                                     >  1:128495/1‑140 (MQ=255)

                       gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTTTTTTTTATGTAATTAATAC‑AAATTTT‑AAAAATa                                                                                                                  >  2:503598/1‑140 (MQ=255)

                       gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTAATTAATAC‑AAATTTT‑AAAAATa                                                                                                                  >  2:327750/1‑140 (MQ=255)

                       gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTTTAAAAAAAAC‑AAATTTA‑AAAAATa                                                                                                                  >  2:1496381/1‑140 (MQ=255)

                         tGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATGTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTGTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATaag                                                                                                                >  2:1378282/1‑138 (MQ=255)

                           aaaCGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTATGTAATTACTAA‑AAATTTG‑TAAAATACggg                                                                                                              >  2:2093592/1‑140 (MQ=255)

                             aCGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTGTGTTGTTTTTTTTGTTATTACTAA‑AAAATTT‑AAAAATAAGGGaa                                                                                                            >  1:2012895/1‑140 (MQ=255)

                               ggCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCTATTGAACCAAAGTAAAACAAAA‑ACCCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAAGTACTAC‑AAATTTG‑AAAAATACGGGaaaa                                                                                                          <  2:720525/140‑1 (MQ=255)

                                 cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAAc                                                                                                        <  1:605243/140‑1 (MQ=255)

                                 cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTGTAATTACTAC‑AAAATTT‑TAAAATAACGGACAAAc                                                                                                        >  1:2022610/1‑140 (MQ=255)

                                 cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGGTGTTTTTTTTGTAAATAGAAA‑AAATTTGTAAAAAAACGGCaaaaa                                                                                                         >  1:445843/1‑140 (MQ=255)

                                  ttGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTGTAATTAAAAC‑AAAATTG‑AAAAAAAAGGGgaaaaaa                                                                                                       >  1:2793072/1‑138 (MQ=255)

                                   tGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TGTTTTGGTGATTTTTTTGTAAATAATAA‑AAATTTG‑AAAAAAAACGGaaaaaaaa                                                                                                      >  2:1425971/1‑137 (MQ=255)

                                     cTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTTATTAATAA‑AAAAAAT‑AAAAATACTGGaaaaaaaaca                                                                                                    >  1:1691981/1‑135 (MQ=255)

                                              tGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTGTAATTAATAA‑AAATTTT‑AAAAATACTGGAAAAAAATCACAGTTACtt                                                                                           >  2:1126555/1‑140 (MQ=255)

                                                 cgcggggggAAATTTTTAAATTTATACCGATTGAAACAACGTAAACAAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAACCATCCCATTTACTTCCa                                                                                        <  1:344770/135‑1 (MQ=255)

                                                 agcgCGGGCAAATTTCAAAATTTAAACCGATTCAAACAAACTAACACAAAA‑ACGCCGGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCa                                                                                        <  1:2438416/137‑1 (MQ=255)

                                                 agagCGGGGAAATTTTTAAATTTATACCGATTGAAAAAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCa                                                                                        <  1:2035698/140‑1 (MQ=255)

                                                        gtaaaTTTTTAAATTTATACCGATTGAAAAAAAGTAAAAAAAAA‑ACGCCTGGGAAACCGGGCGT‑CTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATAtt                                                                                 <  1:1034386/138‑1 (MQ=255)

                                                        ggAAATTTTTAAATTTATACCGGTTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTCTTTTTTATTTTATTACTAC‑CAATTTT‑AAAAATTCGGGAAAAAAATCCCAGTTACTTGCAAAATGtt                                                                                 >  2:2818005/1‑140 (MQ=255)

                                                        ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTTTTTAATTACTAC‑CAATTTG‑TAAAATAAGGGAAAAACATCCCATTTAATTCCAAAATAtt                                                                                 >  2:2797176/1‑140 (MQ=255)

                                                        ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTGTTTTTTGTAAATACTAC‑AAATTTT‑AAAAATAAGGGAAAAAAAAGACAATTAATTACAAAATAtt                                                                                 >  2:1524849/1‑140 (MQ=255)

                                                        ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTCTTTTTTATGTAATTACTAA‑AAATTTG‑TAAAATACGGGAAAAACATCCCATTTAGTTCCAAAAtttt                                                                                 >  2:2026476/1‑140 (MQ=255)

                                                        ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATGTAATTAATAC‑AAAATTG‑AAAAAAACGGGAAAAACATCCCATTTAATTCAAAAAAAtt                                                                                 >  2:1687221/1‑140 (MQ=255)

                                                        ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTAGTTCTTTTTTATGTGATTACTAC‑AAATTTG‑AAAAATAAGTGACAAACATACCAATTCAGTACAAAatata                                                                                 >  2:2639383/1‑139 (MQ=255)

                                                           aaTTTTTAAATTTATCACGATTGAAACAAAGTAAAACAAAA‑AAGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGa                                                                              <  2:779717/140‑1 (MQ=255)

                                                             tttttAAATTTATACCTATTTAAAAAACTTAAAACAAAA‑ACGCCTGGGAAACCGGGATT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑ATATTTG‑AAAAATTGGGGATTAAGATCACATTTAATTCCTAAATAttgtatg                                                                            <  2:1363073/140‑6 (MQ=255)

                                                              ttttAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                           <  1:1811155/140‑1 (MQ=255)

                                                              ttttAAATTAATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                           <  1:266976/140‑1 (MQ=255)

                                                              ttatAAATTTATACCGATTCAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                           <  1:2134997/137‑1 (MQ=255)

                                                                        cacctcaTTTAAAAAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                                                 <  1:495376/134‑1 (MQ=255)

                                                                        ataCCGATTTAAACAACGAAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTCC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                                                 <  2:486253/140‑1 (MQ=255)

                                                                        ataCCGATTGAAAAAAAGAAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                                                 <  2:1918191/140‑1 (MQ=255)

                                                                             gATTCAAACAAAGTAAACCAAAC‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                            <  1:2369181/140‑1 (MQ=255)

                                                                               ttGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TGTTTTGTTCTGTTTTTTGTAATTACTAC‑AAAATTG‑AAAAATACGGGGAAAAAATGCCAGTTTCTTCCCAAAGATTTGATTGTAATTTTTTGTAGGtga                                                          >  2:885271/1‑138 (MQ=255)

                                                                                  aaacaaacAACAACACAA‑ACCCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATACCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                       <  1:1832056/140‑1 (MQ=255)

                                                                                    aCAAATTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAttt                                                     <  2:1146771/140‑1 (MQ=255)

                                                                                        aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGGTTTTTTTTTTTTTTTTTTTATTTATAAA‑AAATTTA‑AAAAAAAAGGGAAAAAAAACCAGTTTA‑TTACAAAAAATTTTTTTGTAATTTTTTTTTGGTGAAAttttttt                                                 >  1:652160/1‑136 (MQ=255)

                                                                                        aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATTTAATTACTAA‑AAAATTT‑AAAAATAAGGGTAAAAAAAACCATTTAGTTACAAAATATTTGTTGGTAATTTTATGTTTGTAAAATTTTTAt                                                 >  2:1410815/1‑140 (MQ=255)

                                                                                        aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGTAATTACTAC‑AAATTTT‑AAAAATAAGGGAAAAACATCCCATTTACTTGCAAAATATTTTATGGTAATTTTATGTAGGTAAAATTTGTAt                                                 >  2:1983105/1‑140 (MQ=255)

                                                                                        aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTGTTTTATTTTTTATGTAATTATGAA‑AAAATTT‑AAAAATAAGGGAAAAACATACCCTTTACTTCCAAAATATTTTATGTTAATTTTATTTAGTTAAAAttttttt                                                 >  2:2464142/1‑136 (MQ=255)

                                                                                        aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TGTTTTTTTGTTTTTTATGTAATTACTAA‑AAATTTG‑TAAAATAAGGGAAAAACATCCCCTTTTATTCCCAAATATTTGTTTGTAATTTTATGTATGTGAAAttgtgtg                                                 >  2:1579105/1‑135 (MQ=255)

                                                                                        aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTGTTTTTTTGTTATTACTAA‑AAAATTT‑AAAAATAAGGGAAAAACATAACAGTTAATTGAAAAAAATTTTTTTTTTATTTTATTTAGTTTATAtttttgt                                                 >  1:1981489/1‑136 (MQ=255)

                                                                                        aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTTTTATTAATACAAAAATTT‑AAAAAAAAGGAAAAAAAAACCC‑CTTAAATACAAAATAATTTTTGTTTATTTTTTTTAGGTTAAAttttttt                                                 >  1:1500913/1‑136 (MQ=255)

                                                                                        aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATTTAATTAATAC‑AAATTTG‑TAAAATAAGGGAAAAACATACCAATTAATTAAAAAAAATTTTATGGTAATTTTATTTAGGTaaaaataagta                                                 >  2:495376/1‑133 (MQ=255)

                                                                                        aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATTTAATTAATAC‑AAAATTT‑TAAAATAAGGGAAAAAAAACCCAATTTCTTCCAAAATATTTTATGGTAATTTTATTTAGGTAAAATTTGttt                                                 >  2:1455866/1‑138 (MQ=255)

                                                                                        aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATTTAAATAATAA‑AAAATTT‑AAAAATAAGGGAAAAAAATACCATTTAATTACAAAAAATTTTATGGTAATTTTATTTAGGTAAAATTTTTAt                                                 >  2:1481878/1‑140 (MQ=255)

                                                                                            accaaaaa‑cCGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                             <  2:2466124/136‑1 (MQ=255)

                                                                                            acacaaca‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATGTACTTCCAAAATATTGGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                             <  2:7907/138‑1 (MQ=255)

                                                                                            aaacaaac‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                             <  1:2797176/140‑1 (MQ=255)

                                                                                            aaaaaaaa‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                             <  2:1558349/140‑1 (MQ=255)

                                                                                            aaaaaaaa‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                             <  2:290967/140‑1 (MQ=255)

                                                                                            aaaaaaaa‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                             <  2:1078721/140‑1 (MQ=255)

                                                                                            aaaCAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                             <  2:1691981/140‑1 (MQ=255)

                                                                                            aaaCAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                             <  1:1850530/140‑1 (MQ=255)

                                                                                            aaaCAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                             <  1:1324972/140‑1 (MQ=255)

                                                                                            aaaCAAAA‑ACCCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                             <  2:127825/140‑1 (MQ=255)

                                                                                             aaCAAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                             <  1:1850234/140‑1 (MQ=255)

                                                                                                       gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                   <  2:19144/140‑1 (MQ=255)

                                                                                                       gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                   <  1:2818005/140‑1 (MQ=255)

                                                                                                       gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                   <  1:2093592/140‑1 (MQ=255)

                                                                                                       gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                   <  1:1481878/140‑1 (MQ=255)

                                                                                                       gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                   <  1:1410815/140‑1 (MQ=255)

                                                                                                            tgAAAGCGTGCGT‑TTTTTTTTTCTTTTTTATTTAATTAATAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt                              <  1:1687221/139‑1 (MQ=255)

                                                                                                            gcaaaCCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACGTCCAAACTATTTGAGGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt                              <  1:2279903/138‑1 (MQ=255)

                                                                                                                aCCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaa                          <  1:327750/140‑1 (MQ=255)

                                                                                                                 ccGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa                         <  1:995597/140‑1 (MQ=255)

                                                                                                                 ccGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa                         <  1:1065755/140‑1 (MQ=255)

                                                                                                                      cGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AACAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                    <  1:1496381/140‑1 (MQ=255)

                                                                                                                      cGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                    <  1:503598/140‑1 (MQ=255)

                                                                                                                      cGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                    <  2:681692/140‑1 (MQ=255)

                                                                                                                                         tATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTta  <  1:577956/140‑1 (MQ=255)

AGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTA  >  NZ_CP034943/2991107‑2991381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`