| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,446,964 | T→A | 7.3% | M208L (ATG→TTG) | degU ← | two‑component system response regulator DegU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,446,964 | 0 | T | A | 7.3% | 1161.8 / 12.2 | 430 | M208L (ATG→TTG) | degU | two‑component system response regulator DegU |
| Reads supporting (aligned to +/- strand): ref base T (190/196); new base A (39/2); total (232/198) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.00e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 467 total aligned reads displayed.
TAACTCTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGT > NZ_CP034943/3446826‑3447103 | aCTCTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑tttt < 1:5356088/140‑1 (MQ=255) aCTCTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑tttt < 2:2357734/140‑1 (MQ=255) ctATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTg < 2:7519388/140‑1 (MQ=255) ctATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTAA‑ttttttt > 1:2630034/1‑139 (MQ=255) ctATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTAA‑ttttttt > 2:5935312/1‑139 (MQ=255) ctATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTAA‑ATTTTTg > 2:1888408/1‑140 (MQ=255) aTTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCa < 1:6687555/140‑1 (MQ=255) aTTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCa < 1:4630628/140‑1 (MQ=255) aTTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTATTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCa < 1:3213384/140‑1 (MQ=255) ttGTAAGGGAAACGGCAGCCTAAAAAAAGAACTGCCCAGTAAAAGGCAAGTCTCTTATGATACTATCTCATTTCTACCCAGCCATTTTTAATGCCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTAA‑TTTTTTGaaa > 1:1816606/1‑140 (MQ=255) tGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTAGTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCaaa < 2:623613/140‑1 (MQ=255) tGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCACTAAAAGGCAATTCTATTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCaaa < 2:4129622/140‑1 (MQ=255) aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAA‑ATTCA‑TTTTTTGCAAAatat > 2:3116921/1‑140 (MQ=255) gggAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTCTTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTAA‑TTTTTTTCAAAATAtt > 1:2359230/1‑140 (MQ=255) gggAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAC‑ATTCA‑TTTTTTTCAAAAAAtt > 1:332990/1‑140 (MQ=255) gAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑AATCA‑ATTTTTTCAAAAAAATGc > 1:3509117/1‑140 (MQ=255) aaaCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCt < 2:7129595/140‑1 (MQ=255) aaCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTGAA‑ATTGA‑TTTTTTTGAAAATATTGGTc > 1:2884395/1‑140 (MQ=255) ccTAAAAAAAGACCTGCCCAGGAAAAGGCCAGTCTCGTGTTATACTAGCTCATTTCTACCCAGCCATTTTTACTGGCGACCACAACGGCGTGCGGCCGGTCGTGGTC‑ATTGA‑TTTTTTTGGAAATAGTGGTCACATGGtg > 1:390917/1‑139 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAACATTGCTCACATGGTTTTTCACGGTTTtct < 1:7114473/140‑1 (MQ=255) cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa < 2:4320906/140‑1 (MQ=255) tAAAAGGCAAGTCTCGTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTTA‑ATTAA‑ATTTTTTCAAAATATTTGTCACAAGGGTTTTAACGGTTTTGTCACtttt > 1:1657661/1‑137 (MQ=255) aaaGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATaa < 1:2213655/140‑1 (MQ=255) ggCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCTGTCGTTTAC‑ATTCA‑ATTTTTGAAAAAAATTGCACACAATGGTTTTAACAGTTTTATCACTTATaaaaa > 2:1448765/1‑138 (MQ=255) ggCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACa < 2:58404/140‑1 (MQ=255) ggCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACa < 2:5454934/140‑1 (MQ=255) ggCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAA‑ATTCA‑TTTTTTTCAAAATATTTGTCACAAGGTTTTTAACGGTTTTCTCACTGATAAACa > 1:4201758/1‑140 (MQ=255) ggCAAGTCTCTTATTATACTACCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACa < 2:26036/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCGAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGTTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 2:4427726/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 1:623162/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 1:4794642/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 1:5779465/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 2:6942041/140‑1 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTTCaaa > 1:5185430/1‑92 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTTCAAAATATTGCTGACATGGTTTTTCACGGTTTTATCACTGATAAACAATGAt > 2:4741930/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCaaa < 2:5185430/92‑1 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCGAACTGATAAACAATGAt > 2:1296853/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACCGTTTTATCACTGATAAAAAATGAt > 2:5579119/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTAATTTTTTTGAAAAAAATTG‑TCACATGGTTTTTCACCGTTTTCTCAAAGATAAACaaatat > 1:4011997/1‑136 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAA‑ATTCA‑ATTTTTTCAAAAAAATTCACAAAAGGTTTTTAAAGGTTTTTTAAAAGATAAACaaatat > 1:843331/1‑136 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAA‑ATTAA‑TTTTTTTCAAAATATTTCTCAAAAGGTTTTTAACGGTTTTATAAATTATaaaaaaatat > 1:2070161/1‑136 (MQ=255) gTCTCTTATTATACTATCTCATATCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAC‑AATCA‑TTTTTTGCAAAATATTGCGCACATGGTTTTTCACGGTTTTATCACTGATAAACAATTAt > 2:3280549/1‑140 (MQ=255) gTCTCTTATTATACTAGCTCATTTCTACCCAGCCATTTTTAATGGCGACCACACCTGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCTAAATATTGCTCACATGGGGTTTCACGGTTGTCTGACTGATAAACCATGag > 2:5366758/1‑139 (MQ=255) ataCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATAc < 1:589698/140‑1 (MQ=255) ataCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATAc < 1:3128912/140‑1 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTTCAAAATATTTCTCACATGGTTTTTAACCGTTTTCTCACTGATAAACAATGATTCAACAATAcc > 1:3696676/1‑140 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTAA‑TTTTTTTCAAAAAAAATCGAAAATGGTTTTTAACATTTTTGTAAATTATAAAAAAATATTAACCaaaaac > 1:1138953/1‑136 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAA‑ATTAA‑TTTTTTTCAAAATATTTCTCACATGGTTTTTAACGGTTTTCTCACTGATAAAAAATTATTCACCAAAAcc > 1:7207542/1‑140 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTGAG‑ATGCA‑ATTTTTTGAAAAAATTGCTCACATAGTTTTTATCGGTTTTATCAATGTTAAACAAATATTTACGAATaac > 1:6016280/1‑138 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAC‑ATTAA‑ATTTTTGAAAAAAATTTCTAAAATTGTTTTTAAAGGTTTTATAACTTATAAAAAAATAATCACCaaaaac > 1:103021/1‑136 (MQ=255) tATCTCATTTCTACCCAGCCCTTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACcgcg < 2:6087681/140‑1 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTA‑ATTCA‑TTTTTTTCAAAAAATTTCTCACATTGTTTTTAACGGTTTTCTCACTGATAAAAAAAGATTGACCAAAAACGCgg > 1:7728377/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTTCAAAATATTTCTCACATTGTTTTTCACTGTTTTCTCAATGATAAACAAATAATCACCAATAcccccg > 1:7290684/1‑136 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCAAATGGTTTTTCACCGTTTTCTCACTGATAAACAATGATTAACCCAAAcccccg > 2:912209/1‑136 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTAA‑TTTTTTGCAAAATAATGAACACATGGTTTTTCAAGGTTTTCTCACTGATAAACAAAGATTAAACAATAACCCgg > 2:7743888/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAA‑ATTCA‑TTTTTTGCAAAAAATTTCTAACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAAAAACGCgg > 2:2233115/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAC‑ATTCA‑TTTTTTGCAAAATATTTCTCACATTGTTTTTCACGGTTTTATCACTGATAAAAAATGATTAACCAATAACGCgg > 2:524823/1‑140 (MQ=255) tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTTCAAAATATTGCTCACATGGTTTTTCACGGTTTTATGACTGATAAACAATGATTAAACAATAACGCGGt > 2:6003639/1‑140 (MQ=255) tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑AATAA‑ATTTTTTCAAAAAAATTCTCAAATGGTTTTTAAACGTTTTATAACTTATAAAAAATGATTCAACAAAAACCCGGt > 1:7342010/1‑140 (MQ=255) tcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCAc > 2:1763901/1‑97 (MQ=255) tcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCAc > 2:4502944/1‑97 (MQ=255) tcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCAc < 1:1763901/97‑1 (MQ=255) tcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAA‑ATTAA‑TTTTTTGCAAAAAATTGCTCACATTGTTTTTCACGGTTTTCTCACTTATAAAAAATTATTAACCAATACCGCGGTTg > 2:7407861/1‑140 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTTCAAAATATTGCTcaca > 2:7355994/1‑83 (MQ=255) tttCTACCCAGCCATTTATAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTAA‑TTTTTTGCAAAATATTTAAAACATTGTTTTTAACGGTTTTATCACAGATAAACAAATATTAACAAATAACGAGGATGcat > 2:4968096/1‑138 (MQ=255) tACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTc < 1:3619405/140‑1 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTAA‑TTTTTTGCAAAAAATTGCGAACAAGGTTTTTCACGCTTTTGTCACTGATAAACAAAGAGTCACCAAAAAAGCGGTTGGtttttag > 1:454103/1‑138 (MQ=255) cccAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTAA‑ATTAA‑TTTTTTGCAAAATATTGCTCAAATGGTTTTTCAAGGTTTTCTCACTTAGAAAAAATGATTCACCAATACCGCGGTTTCTTTTTACg > 1:1465700/1‑140 (MQ=255) ccATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATCCA‑TTTTTTAC‑AAATATTTGCGACAGGGGTTTTTACGGTTTTATAACGTTTAAAAAAAATTTAACCAAAAACGACGTTGCGTTTTACCTCTGc > 1:6988803/1‑140 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 1:5425236/140‑1 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 1:1899743/140‑1 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 1:2510962/140‑1 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTACCGTCTGCa < 1:5002596/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 2:7257826/140‑1 (MQ=255) cGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagc < 1:2793389/140‑1 (MQ=255) cGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagc < 1:6727848/140‑1 (MQ=255) cGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagc < 1:4352535/140‑1 (MQ=255) cGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGGTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCCAAACCGCGGTTGCGTTTTCCGGATGCAACCATCAtcagc > 2:3938907/1‑140 (MQ=255) aCCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATTATTCTCCAATACCGCGGTTTGTTTTTCCGTCTGCAAGCATCTGCAGCAc > 2:4651527/1‑140 (MQ=255) cacaACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAGATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt < 2:5042389/140‑1 (MQ=255) cacaACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt < 2:7451912/140‑1 (MQ=255) cacaACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt < 2:1148822/140‑1 (MQ=255) cTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTTCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTACGGCTGCAAGCATCTGCAGCACTTCACATTcc > 2:4638775/1‑140 (MQ=255) tGCGTCCGGTGGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATTGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 2:6474266/140‑1 (MQ=255) tGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 1:1332463/140‑1 (MQ=255) gCGTGCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACCTTCccgc < 1:5615128/140‑1 (MQ=255) cGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccgcc < 2:6741424/140‑1 (MQ=255) cGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccgcc < 2:3608948/140‑1 (MQ=255) gTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTTCTAACCAGGTTTTTCAAGGTTTTATCACTGATAAAAAAAGATTGACCAATACCGCGGTTGCTTTTTCCGTCTGCAAACATCTGCAGCACTTCACATTCccgccg > 2:207154/1‑140 (MQ=255) gTCCGGTCGTTTAC‑ATTAA‑TTTTTTTCAAAAAATTTCTCACATGGTTTTTCACGGTTTTCTGACTGGTAAACAAATATTCAACAATAACGCGGTTGCTTTTTACGTCTGCAACCATCTGCAGCACTTCACATTAccgccg > 2:6849070/1‑140 (MQ=255) ccGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAg < 1:6482380/140‑1 (MQ=255) ggTCGTTTAC‑ATTAA‑TTTTTTGCAAAATATTTCTCACATGGTTTTTCACGGTTTTATCACTGATAAAAAATGATTCACCAAAACCGCGGTTGCTTTTTCCGTCTGCAACCAACTGCAGCACTTAACATTCCCGCCCAGtt > 2:4924646/1‑140 (MQ=255) ggTCGTTTAC‑AATCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAAAACCGCGGTTTCTTTTTCCGTCTGCAAGCATCAGCAGCACATCACAATCCCGCCGAGtt > 2:5625924/1‑140 (MQ=255) gTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGTTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTa < 2:1973145/140‑1 (MQ=255) cGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTGGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 2:2905649/140‑1 (MQ=255) cGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:6377695/140‑1 (MQ=255) gTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaaa < 1:7394016/140‑1 (MQ=255) tttAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAat < 2:2452666/140‑1 (MQ=255) ca‑ttTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATg < 1:7449169/140‑1 (MQ=255) a‑ttTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATgg > 1:96978/1‑140 (MQ=255) | TAACTCTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAC‑ATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGT > NZ_CP034943/3446826‑3447103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |