| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 316,262 | C→A | 7.0% | Q28K (CAA→AAA) | opuAA → | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 316,262 | 0 | C | A | 7.0% | 1679.2 / 18.9 | 674 | Q28K (CAA→AAA) | opuAA | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Reads supporting (aligned to +/- strand): ref base C (392/204); new base A (6/71); total (398/276) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.16e-23 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 680 total aligned reads displayed.
TGTGGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAC > NZ_CP034943/316124‑316401 | gAATGTTACATCAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGTAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAAtt > 1:4908884/1‑139 (MQ=255) aTGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCt > 2:2908467/1‑140 (MQ=255) tACATAAGTGTTTCTGTTATAAGTATTGTATAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGcc < 2:4528938/140‑1 (MQ=255) tACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGcc > 1:5262838/1‑140 (MQ=255) aaGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAATTTCTTGCCAACgg > 2:5113369/1‑140 (MQ=255) gtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑g > 2:1850195/1‑140 (MQ=255) ttACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGTGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑Ga > 1:979035/1‑140 (MQ=255) ttACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATTCTTTCCAACGGAAA‑Ga > 1:5502517/1‑140 (MQ=255) ttACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑Ga > 2:1281525/1‑140 (MQ=255) ttACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑Ga > 1:2426810/1‑140 (MQ=255) tACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GAc > 2:3424274/1‑140 (MQ=255) aCGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAACCAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACa > 1:3522091/1‑140 (MQ=255) aCGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑Ga > 2:6580974/1‑138 (MQ=255) ataAGTATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACaaaaaaa > 1:6628819/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATCAAAGTCGAGAAAGTATCTAAAATTTTTGGGAACCAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACaaaaaaa > 2:1694356/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCCGTTCAAATGCTTGCCAACGGAAA‑GACaaaaaaa > 2:6713115/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACaaaaaaa > 1:1337394/1‑140 (MQ=255) caGGAGTGTTTAATATGGCGCGAAACCACTAGCTTACAAGACCACCCAATTACCATCCAAGTCGATAAAGCATCTAAAATTTTTGCGAACCAAACAAAGAAAGCAGTTCAAATGCTTGCCCACGCAAA‑GACAAAAAAaga < 2:2381745/139‑1 (MQ=255) aaGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAACCACACCATGACAGCAGTTCAAATGCGTGCCAACGGAAA‑GACAAAAAAcga > 2:7096555/1‑140 (MQ=255) aaGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAACTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGATCAAATGCTTGCCAACGGACA‑GACAAAAAAaga > 2:1178006/1‑140 (MQ=255) aTTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATc > 2:721750/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAgaga < 1:2743570/136‑1 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCt > 1:6183430/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCt > 2:5241606/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCt > 1:678191/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATCAGTGGAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCt > 2:3167710/1‑140 (MQ=255) tttAATATTGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAACTCGAGAAAGAATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACTGAAA‑GACAAAAAAAGAGATACTGa > 1:5135773/1‑140 (MQ=255) tttAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGa > 1:5364498/1‑140 (MQ=255) tttAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGa > 2:7713037/1‑140 (MQ=255) tttAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGa > 1:7420012/1‑140 (MQ=255) tatGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCg > 1:4463745/1‑140 (MQ=255) atgtaaaaTATGAGTGTAGATGAGAAAAAAAAAAATATAAAAATCGAGAAAGAATATAAAATTTTTGTGAAACAAACAAATAAAGAATTTAAAATTCTTTCAAAATGAAA‑GACAAAAAAAGAGATACTGAAAGCGAACgg > 2:3684115/5‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCTAGAAAGTAGCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGAATGCCAACGGAAA‑GAAAAAAAAAGAGATCCTGAAAGCGACCgg > 1:3685631/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAagag < 2:2332401/123‑1 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:4010973/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:5663037/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:234399/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:7300632/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:1005972/1‑140 (MQ=255) tGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGtt > 1:5742135/1‑140 (MQ=255) aGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCACCCGGTgg > 2:5872124/1‑140 (MQ=255) gtgtAGAGCACAAACCAATTAACATAAACGTCCACAAAGTAACTAAAATTTTTGGTAAAAAAACAACGAAAGCAGTTAAAATGCTTCCCAACGCAAA‑CACAAAAAAAGAGATCCTCAAAGCGACCGGATCAACCGTTggg < 1:1660634/140‑1 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 2:6061867/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 1:3119198/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 1:2531168/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 2:6963845/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GAC‑AAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGt > 1:1185859/1‑140 (MQ=255) gtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGGTGGGGt > 2:4248628/1‑140 (MQ=255) tAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTa > 2:2634170/1‑140 (MQ=255) gATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGGTGGGGTaaa > 2:7532785/1‑140 (MQ=255) aTGAGAAACCAATTAAGATAAAAGACGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGACA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTaact > 2:5623517/1‑138 (MQ=255) aaaaaaaTTAATATAAAAGTCTATAAATTATATAAAATTTTTGGCAAACAAAAAAATAAAGCAGTTCAAATGTTTGCAAACTTAAA‑TAAAAAAAAAGTGATCTTTAAATATACATTATAAACCGTTGGGGTAAATCaacc < 2:2718998/135‑3 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAATCAGTTCAAATGATTGCCAACCGAAA‑GACCAAAAAAGAGATCCTCAAAGCGACCTGATCAACAGTTGGGGTAAATCAAGc > 1:3425786/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGACA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:3291533/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:4040458/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:6957279/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:4595013/1‑140 (MQ=255) aaaCAAATTAATATAAAAGTCGATAAATTATCTAAAATTTTTGGGAAAAAAACAAATAAAGCATTTCAATGGCTTGCCAACGCAAA‑CACAAAAAAAGACAGCGTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGc < 2:3071648/140‑1 (MQ=255) aCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAg > 1:6344583/1‑140 (MQ=255) aCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGGTGGGGTAAATCAAGCAg > 1:7024964/1‑140 (MQ=255) aCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGGTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAg > 1:6110439/1‑140 (MQ=255) aTTAAGATAAAAGTCGAGAAAGTATATAAATTTTTTGGCAAACAAACAAAGAAAGCATTTAAAAGGCTTGCCAACGGAAA‑CACAAAAAAAGAGAGCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAttt < 2:2004995/140‑1 (MQ=255) taataaaaacGTCTATAAATTATCTAAAATTTTTGGCAAAAAAAAAAACAAAGCAGTAAAATTGCTTGCCACCGCAAA‑CAAAAAAAAAGAGATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:3349406/134‑1 (MQ=255) tAATATAAAAGTCGATAAATTATCTAAAATTTTTGGCAAACAAACAAAGAAAGCAGTTCAAAGGCTTGCCACCGCAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:1431284/140‑1 (MQ=255) tAAGATAAACGACGAGAAAGTATCTAAATTTTTGGGGAAACAAAAAAACAAAGCAGTAAAATGGCTTGCCACCGCAAA‑CACAAAAAAACACATCCTTAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:1877745/140‑1 (MQ=255) tAAGATAAAAGTCGATAACGTATATAAAATTTTTGGCAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAACAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:4648557/140‑1 (MQ=255) tAAGAAAACAGTCGATAAAGTATATAAAATTTTTGGGAAACAAACAAACAAAGCAGTACAAATGCTTCCCAACGGAAA‑GACAAAAAAAGAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:2538911/140‑1 (MQ=255) aGATAAACGTCGAGAAAGTATCTAAAATTTTTGGGAAAAAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAG‑GAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:6226330/140‑1 (MQ=255) aGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATatg < 2:4349144/140‑1 (MQ=255) taacttatataAATTTTTTGGCAAAAAAAAAAATAACCCATTTCAAATGGTTGCCACCGCAAA‑CAAAAAAAAACAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTg < 1:2614359/135‑1 (MQ=255) gaAAGTATCTAAAATTTTTGGTAAACAAAAAAAGAAAGCAGTTAAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTg < 2:5502517/140‑1 (MQ=255) cactgTATCTAAATTTTTTGGCAAAAAAAAAAACAAAGCATTTAAAATGCTTGCCACCGCAAA‑CAAAAAAAAAGAGACCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTg < 1:4170423/136‑1 (MQ=255) caacttATCTAAATTTTTTGGCAAAAAAACAAAGAAACCATTTAAAATGGTTGCCACCGCAAA‑AAAAAAAAAAGAGAGCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTg < 1:875931/135‑1 (MQ=255) attATCTAAAATTTTTGGCAAAAAAACAAAGAAAGCAGTTAAAAGGCTTGCAAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTgaga < 2:4129358/138‑1 (MQ=255) aTCTAAAATTTTTGGTAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGatat < 2:379444/140‑1 (MQ=255) aTCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACCAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGatat > 1:7259736/1‑140 (MQ=255) aTCTAAAATTTTTGGGAAAAAAAAAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCGGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGatat < 2:218660/140‑1 (MQ=255) cTAAAATTTTTGGTAAAAAAACAAAGAAACCATTAAAAATCCTTGCCAACGCAAA‑GAAAAAAAAACAGATCCTGACAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATAttt < 1:1490190/140‑1 (MQ=255) aaaaTTTTTGCGAAAAAAACAACCAACCCCCTGCAAAGCCTTCCCAACCCCAA‑GACAACAAAAGCCAGCCGGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGt < 1:2063425/140‑1 (MQ=255) ttttGGCAAACAAACAAAGAAACCAGTTAAAATGCTTGCAAACCCAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatca < 2:4733862/140‑1 (MQ=255) tttGGGAAACAAACAAACAACGCCTTTCAAATGCTTGCAACCGCAAA‑GACAAAAAAAGAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:4956153/140‑1 (MQ=255) tttGGGAAAAAAAAAAAGAAAGCAGTTCAACTGCTTGCCACCGCAAA‑GAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:7624114/140‑1 (MQ=255) ttggcgAAAAAAACCAAGAACGCAGTAAAAATGCTTGCCACCGTAAA‑TAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:4947797/135‑1 (MQ=255) gttGGGAAACAAACAACGAAAGCAGTTAAAATGCTTGCCAACGGAAC‑GACAAAAAAAGAGAGCCTGACAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:5713613/139‑1 (MQ=255) ttGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATg > 1:6464998/1‑140 (MQ=255) ttGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATg > 2:2433454/1‑140 (MQ=255) tGGTAAACACAAAAATAAAGCAGTTAAATTGCTT‑CCATAGGAAACTACAAAAAAATAGATCCTTAACGCGACCGGATCAACCGTTGGGTTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 2:6401146/140‑1 (MQ=255) ggcaaaaaaacAAAGAAACCAGTTAAAATGGTTGCCAACGGAAA‑CA‑AAAAAAAGACATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGt < 1:582704/137‑1 (MQ=255) ggAAACAAAAAAAGAAACCAGTACAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGt < 2:3514273/140‑1 (MQ=255) aaaataaagCTTTTCAATTGCTTCCCAACGCAAA‑CAAAAAAAAATAGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAggg < 1:2967049/139‑1 (MQ=255) aagcttttCAAATGCTTCCCAACGTAAA‑CACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGt < 1:4697944/134‑1 (MQ=255) aagaatttCAAATGCTTGCCAACGTAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGt < 2:6337854/134‑1 (MQ=255) agCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTGGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTa > 1:7215691/1‑140 (MQ=255) agCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTGGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGACATCATGGGTCTATCAGGGAGCGGTa > 2:3329768/1‑140 (MQ=255) cAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTaaa > 1:1797450/1‑140 (MQ=255) aGTTCAAATGCTTGCCAACGGAAA‑CACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATAGGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAAt < 1:2247022/140‑1 (MQ=255) gTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc > 1:3820331/1‑140 (MQ=255) gTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGGTGGGGTAAATCAAGCAGATTTTGAGGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc > 1:7113462/1‑140 (MQ=255) gTTCAAATGCTTGCAAACGGAAA‑GACAAAAAAAGAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc < 2:4403462/140‑1 (MQ=255) ctacAAATGCTCGCCAACGGAAA‑GACAAAAAATGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc < 1:4352159/137‑1 (MQ=255) | TGTGGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACGGAAA‑GACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAC > NZ_CP034943/316124‑316401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |